Wall clock time and date at job start Tue Mar 31 2020 13:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46952 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47427 * 119.99957 * 3 2 1 6 6 H 1.48507 * 109.46853 * 239.99868 * 3 2 1 7 7 C 1.39974 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 154.80772 * 7 2 1 9 9 C 1.41044 * 119.99791 * 334.81706 * 7 2 1 10 10 C 1.40742 * 120.30580 * 334.81446 * 9 7 2 11 11 C 1.36450 * 119.94555 * 180.02562 * 10 9 7 12 12 C 1.38887 * 120.58690 * 0.02562 * 11 10 9 13 13 C 1.38193 * 120.61937 * 0.02562 * 12 11 10 14 14 C 1.38690 * 120.03438 * 359.67418 * 13 12 11 15 15 N 1.38995 * 120.29370 * 180.32339 * 14 13 12 16 16 C 1.34780 * 119.99693 * 325.33508 * 15 14 13 17 17 O 1.21568 * 119.99668 * 4.38563 * 16 15 14 18 18 C 1.47799 * 119.99887 * 184.38434 * 16 15 14 19 19 C 1.40642 * 119.76037 * 359.72643 * 18 16 15 20 20 C 1.35720 * 120.83277 * 179.77543 * 19 18 16 21 21 C 1.40711 * 120.08829 * 0.47046 * 20 19 18 22 22 N 1.33787 * 120.86047 * 179.74253 * 21 20 19 23 23 C 1.31332 * 119.76921 * 180.02562 * 22 21 20 24 24 C 1.39751 * 120.71206 * 359.97438 * 23 22 21 25 25 N 1.31280 * 120.67158 * 0.02562 * 24 23 22 26 26 C 1.33828 * 119.73702 * 359.97438 * 25 24 23 27 27 C 1.38447 * 119.75790 * 179.97438 * 18 16 15 28 28 H 0.97008 * 120.00037 * 174.62819 * 1 2 3 29 29 H 1.07999 * 120.02739 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.70878 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.68686 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.98497 * 180.02562 * 13 12 11 33 33 H 0.96992 * 120.00200 * 145.33577 * 15 14 13 34 34 H 1.08001 * 119.58629 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.95657 * 180.23477 * 20 19 18 36 36 H 1.08002 * 119.64644 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.66417 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.25632 * 359.95498 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0962 1.6965 1.2125 6 1 3.0962 1.6963 -1.2126 7 6 2.0083 -1.2122 0.0005 8 1 3.0113 -1.2568 -0.3976 9 6 1.4036 -2.3754 0.5208 10 6 0.3827 -2.2748 1.4844 11 6 -0.1969 -3.4049 1.9831 12 6 0.2117 -4.6594 1.5489 13 6 1.2126 -4.7858 0.6046 14 6 1.8151 -3.6540 0.0758 15 7 2.8177 -3.7748 -0.8792 16 6 3.6820 -4.8074 -0.8220 17 8 3.5367 -5.6759 0.0162 18 6 4.8063 -4.8839 -1.7783 19 6 4.9663 -3.8794 -2.7496 20 6 5.9934 -3.9256 -3.6355 21 6 6.9104 -4.9922 -3.5974 22 7 7.9255 -5.0558 -4.4665 23 6 8.7685 -6.0614 -4.4120 24 6 8.6179 -7.0680 -3.4544 25 7 7.6300 -7.0281 -2.5906 26 6 6.7579 -6.0137 -2.6260 27 6 5.6915 -5.9466 -1.7147 28 1 -0.4850 -0.8364 -0.0787 29 1 0.0588 -1.3040 1.8293 30 1 -0.9798 -3.3233 2.7227 31 1 -0.2568 -5.5443 1.9538 32 1 1.5221 -5.7663 0.2740 33 1 2.8955 -3.1159 -1.5868 34 1 4.2647 -3.0592 -2.7890 35 1 6.1049 -3.1446 -4.3731 36 1 9.5871 -6.1110 -5.1148 37 1 9.3208 -7.8874 -3.4251 38 1 5.5633 -6.7177 -0.9694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344401020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:06 Heat of formation + Delta-G solvation = 53.226855 kcal Electronic energy + Delta-G solvation = -24761.153512 eV Core-core repulsion = 21147.165885 eV Total energy + Delta-G solvation = -3613.987627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62649 -39.89352 -37.85390 -36.85750 -35.04065 -34.12599 -33.91889 -31.29369 -30.76305 -29.42490 -28.63336 -25.93164 -25.04927 -24.70973 -22.77018 -21.86693 -21.10999 -20.25939 -18.59870 -18.53382 -17.97470 -17.24145 -16.72850 -15.92632 -15.37367 -14.90472 -14.85236 -14.64047 -14.43115 -14.34948 -14.16681 -13.94213 -13.40407 -12.89439 -12.59940 -12.32925 -12.07400 -12.02936 -11.95091 -11.92604 -11.85446 -11.51189 -11.09224 -10.76027 -10.48772 -10.41933 -9.78815 -9.50004 -9.38721 -9.22751 -9.17302 -8.97869 -8.79169 -7.69004 -7.46220 -7.04356 -4.55531 -0.13415 0.19644 1.62627 2.18263 2.65246 2.76582 3.07987 3.19037 3.28603 3.39432 3.52399 3.77049 3.89995 3.91285 3.95799 3.99973 4.47790 4.53827 4.62417 4.78889 4.86659 4.98632 5.13812 5.38224 5.49734 5.66980 5.86490 5.89542 6.06250 6.15550 6.26342 6.35460 6.42501 6.74268 6.87624 6.97195 7.05976 7.30622 7.43101 7.44107 7.63704 7.68335 7.84480 7.94121 8.13656 8.23122 8.56244 8.68025 8.82828 9.92811 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.003516 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.787237 B = 7962.322751 C = 9573.887372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.041 3.959 3 Si 1.063 2.937 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.075 0.925 9 C 0.093 3.907 10 C -0.208 4.208 11 C -0.089 4.089 12 C -0.241 4.241 13 C -0.069 4.069 14 C 0.000 4.000 15 N -0.623 5.623 16 C 0.537 3.463 17 O -0.531 6.531 18 C -0.099 4.099 19 C -0.072 4.072 20 C -0.087 4.087 21 C 0.090 3.910 22 N -0.427 5.427 23 C 0.079 3.921 24 C 0.071 3.929 25 N -0.417 5.417 26 C 0.071 3.929 27 C -0.021 4.021 28 H 0.301 0.699 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.402 0.598 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.031 -6.100 -9.331 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.181 4.181 3 Si 0.886 3.114 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.093 0.907 9 C 0.089 3.911 10 C -0.228 4.228 11 C -0.108 4.108 12 C -0.261 4.261 13 C -0.089 4.089 14 C -0.094 4.094 15 N -0.265 5.265 16 C 0.324 3.676 17 O -0.409 6.409 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.107 4.107 21 C -0.034 4.034 22 N -0.141 5.141 23 C -0.097 4.097 24 C -0.106 4.106 25 N -0.131 5.131 26 C -0.053 4.053 27 C -0.041 4.041 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.130 0.870 33 H 0.239 0.761 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.464 -4.922 -8.611 15.929 hybrid contribution 0.381 -1.403 -0.381 1.503 sum 12.845 -6.324 -8.992 16.907 Atomic orbital electron populations 1.70471 1.08204 1.34471 1.28277 1.26981 0.95628 1.04203 0.91329 0.83659 0.75713 0.73942 0.78071 1.19774 1.19969 1.20079 1.20347 1.02745 0.94120 1.38073 0.90721 1.17476 0.92287 0.90831 0.90513 1.20761 1.03000 0.97461 1.01529 1.20424 0.98534 0.93145 0.98708 1.20272 1.03922 0.95977 1.05886 1.20715 0.94455 0.96832 0.96918 1.17550 0.97898 0.94116 0.99799 1.42699 1.28680 1.26256 1.28844 1.18089 0.81934 0.83318 0.84293 1.90748 1.74013 1.38713 1.37466 1.20178 0.97124 0.95904 0.97260 1.21200 0.97376 0.97713 0.92913 1.20671 0.93084 0.97136 0.99784 1.19659 0.94798 0.95739 0.93217 1.68712 1.01738 1.22484 1.21171 1.24119 0.97729 0.90252 0.97594 1.24083 0.95745 0.99181 0.91543 1.68679 1.01657 1.21300 1.21440 1.19439 0.96316 0.92650 0.96863 1.21218 0.89917 0.97029 0.95973 0.88511 0.87268 0.89076 0.88880 0.87038 0.76099 0.83890 0.83599 0.80756 0.80724 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 12.32 55.55 0.68 -19.02 16 2 C 0.04 0.97 4.95 -17.32 -0.09 0.89 16 3 Si 1.06 20.17 30.00 -169.99 -5.10 15.07 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 6 H -0.28 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.52 -12.69 8.35 -37.87 -0.32 -13.01 16 8 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 9 C 0.09 2.32 5.32 -106.64 -0.57 1.76 16 10 C -0.21 -5.13 7.88 -39.28 -0.31 -5.44 16 11 C -0.09 -2.04 9.97 -39.99 -0.40 -2.44 16 12 C -0.24 -5.47 10.04 -39.36 -0.39 -5.86 16 13 C -0.07 -1.63 8.68 -39.43 -0.34 -1.97 16 14 C 0.00 0.00 6.33 -83.20 -0.53 -0.53 16 15 N -0.62 -12.41 4.84 -10.34 -0.05 -12.46 16 16 C 0.54 10.27 7.61 -12.35 -0.09 10.17 16 17 O -0.53 -11.75 13.71 5.31 0.07 -11.68 16 18 C -0.10 -1.52 5.87 -105.00 -0.62 -2.14 16 19 C -0.07 -0.91 9.44 -39.58 -0.37 -1.28 16 20 C -0.09 -1.04 9.95 -39.55 -0.39 -1.43 16 21 C 0.09 1.17 6.59 -84.72 -0.56 0.61 16 22 N -0.43 -4.95 10.46 -10.74 -0.11 -5.06 16 23 C 0.08 0.65 11.21 -17.20 -0.19 0.46 16 24 C 0.07 0.60 11.22 -17.22 -0.19 0.41 16 25 N -0.42 -5.23 10.46 -10.81 -0.11 -5.35 16 26 C 0.07 0.98 6.58 -84.81 -0.56 0.42 16 27 C -0.02 -0.31 9.56 -38.68 -0.37 -0.68 16 28 H 0.30 7.70 6.63 -40.82 -0.27 7.43 16 29 H 0.11 2.75 6.45 -52.49 -0.34 2.42 16 30 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 31 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.11 2.59 6.19 -52.48 -0.33 2.27 16 33 H 0.40 7.04 5.95 -40.82 -0.24 6.80 16 34 H 0.14 1.58 6.35 -52.49 -0.33 1.25 16 35 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 36 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.18 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.16 2.36 7.61 -52.48 -0.40 1.96 16 LS Contribution 329.50 15.07 4.97 4.97 Total: -1.00 -30.56 329.50 -9.15 -39.71 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -3.21 Total: 13.89 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -6.29 Total: -20.07 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.41 Total: -41.88 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.10 Total: 15.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.56 -9.15 -39.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344401020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.941 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds