Wall clock time and date at job start Tue Mar 31 2020 13:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48498 * 109.46952 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47427 * 119.99957 * 3 2 1 6 6 H 1.48507 * 109.46853 * 239.99868 * 3 2 1 7 7 C 1.39974 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 154.80772 * 7 2 1 9 9 C 1.41044 * 119.99791 * 334.81706 * 7 2 1 10 10 C 1.40742 * 120.30580 * 334.81446 * 9 7 2 11 11 C 1.36450 * 119.94555 * 180.02562 * 10 9 7 12 12 C 1.38887 * 120.58690 * 0.02562 * 11 10 9 13 13 C 1.38193 * 120.61937 * 0.02562 * 12 11 10 14 14 C 1.38690 * 120.03438 * 359.67418 * 13 12 11 15 15 N 1.38995 * 120.29370 * 180.32339 * 14 13 12 16 16 C 1.34780 * 119.99693 * 325.33508 * 15 14 13 17 17 O 1.21568 * 119.99668 * 4.38563 * 16 15 14 18 18 C 1.47799 * 119.99887 * 184.38434 * 16 15 14 19 19 C 1.40642 * 119.76037 * 359.72643 * 18 16 15 20 20 C 1.35720 * 120.83277 * 179.77543 * 19 18 16 21 21 C 1.40711 * 120.08829 * 0.47046 * 20 19 18 22 22 N 1.33787 * 120.86047 * 179.74253 * 21 20 19 23 23 C 1.31332 * 119.76921 * 180.02562 * 22 21 20 24 24 C 1.39751 * 120.71206 * 359.97438 * 23 22 21 25 25 N 1.31280 * 120.67158 * 0.02562 * 24 23 22 26 26 C 1.33828 * 119.73702 * 359.97438 * 25 24 23 27 27 C 1.38447 * 119.75790 * 179.97438 * 18 16 15 28 28 H 0.97008 * 120.00037 * 174.62819 * 1 2 3 29 29 H 1.07999 * 120.02739 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.70878 * 179.97438 * 11 10 9 31 31 H 1.08005 * 119.68686 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.98497 * 180.02562 * 13 12 11 33 33 H 0.96992 * 120.00200 * 145.33577 * 15 14 13 34 34 H 1.08001 * 119.58629 * 359.97438 * 19 18 16 35 35 H 1.07999 * 119.95657 * 180.23477 * 20 19 18 36 36 H 1.08002 * 119.64644 * 179.97438 * 23 22 21 37 37 H 1.07999 * 119.66417 * 179.97438 * 24 23 22 38 38 H 1.08006 * 120.25632 * 359.95498 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0962 1.6965 1.2125 6 1 3.0962 1.6963 -1.2126 7 6 2.0083 -1.2122 0.0005 8 1 3.0113 -1.2568 -0.3976 9 6 1.4036 -2.3754 0.5208 10 6 0.3827 -2.2748 1.4844 11 6 -0.1969 -3.4049 1.9831 12 6 0.2117 -4.6594 1.5489 13 6 1.2126 -4.7858 0.6046 14 6 1.8151 -3.6540 0.0758 15 7 2.8177 -3.7748 -0.8792 16 6 3.6820 -4.8074 -0.8220 17 8 3.5367 -5.6759 0.0162 18 6 4.8063 -4.8839 -1.7783 19 6 4.9663 -3.8794 -2.7496 20 6 5.9934 -3.9256 -3.6355 21 6 6.9104 -4.9922 -3.5974 22 7 7.9255 -5.0558 -4.4665 23 6 8.7685 -6.0614 -4.4120 24 6 8.6179 -7.0680 -3.4544 25 7 7.6300 -7.0281 -2.5906 26 6 6.7579 -6.0137 -2.6260 27 6 5.6915 -5.9466 -1.7147 28 1 -0.4850 -0.8364 -0.0787 29 1 0.0588 -1.3040 1.8293 30 1 -0.9798 -3.3233 2.7227 31 1 -0.2568 -5.5443 1.9538 32 1 1.5221 -5.7663 0.2740 33 1 2.8955 -3.1159 -1.5868 34 1 4.2647 -3.0592 -2.7890 35 1 6.1049 -3.1446 -4.3731 36 1 9.5871 -6.1110 -5.1148 37 1 9.3208 -7.8874 -3.4251 38 1 5.5633 -6.7177 -0.9694 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344401020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:05 Heat of formation + Delta-G solvation = 34.755784 kcal Electronic energy + Delta-G solvation = -24761.954478 eV Core-core repulsion = 21147.165885 eV Total energy + Delta-G solvation = -3614.788593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53779 -41.41412 -39.43249 -38.08442 -35.96859 -35.80825 -35.64874 -32.34105 -31.75277 -31.26073 -30.28435 -27.26753 -26.56448 -25.64313 -24.00979 -23.23742 -22.77742 -21.79979 -20.02689 -19.71835 -19.41100 -18.23484 -18.13209 -17.20330 -16.68740 -16.47597 -16.11563 -15.89964 -15.72601 -15.69690 -15.25886 -15.06737 -14.89804 -14.55083 -14.20144 -13.90925 -13.56735 -13.38332 -12.95998 -12.88913 -12.85447 -12.76882 -12.68773 -12.46527 -12.19619 -11.95415 -11.52817 -11.18695 -10.90565 -10.73172 -10.20435 -10.15284 -9.80239 -9.57292 -9.31528 -8.85265 -6.43427 -1.08238 -0.68384 0.59088 0.82267 0.90634 1.31324 1.54486 1.66050 1.82152 2.06177 2.19363 2.33752 2.69095 2.90155 2.94158 3.07039 3.15300 3.48977 3.53952 3.72806 3.83229 3.93980 4.07315 4.37651 4.39480 4.40761 4.59115 4.66078 4.68387 4.86496 4.91273 4.99433 5.03875 5.12803 5.25414 5.44916 5.46567 5.65191 5.76862 5.87030 5.99978 6.10537 6.16665 6.31791 6.53072 6.62725 6.79252 6.88547 7.18262 8.04636 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.003516 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.787237 B = 7962.322751 C = 9573.887372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.010 3.990 3 Si 1.112 2.888 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.067 3.933 10 C -0.227 4.227 11 C -0.093 4.093 12 C -0.242 4.242 13 C -0.086 4.086 14 C -0.004 4.004 15 N -0.622 5.622 16 C 0.539 3.461 17 O -0.567 6.567 18 C -0.113 4.113 19 C -0.076 4.076 20 C -0.077 4.077 21 C 0.078 3.922 22 N -0.448 5.448 23 C 0.100 3.900 24 C 0.087 3.913 25 N -0.452 5.452 26 C 0.051 3.949 27 C -0.026 4.026 28 H 0.287 0.713 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.110 0.890 33 H 0.412 0.588 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.227 0.773 37 H 0.223 0.777 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.060 -6.113 -11.412 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.208 4.208 3 Si 0.929 3.071 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.173 1.173 7 C -0.570 4.570 8 H 0.100 0.900 9 C 0.063 3.937 10 C -0.247 4.247 11 C -0.112 4.112 12 C -0.262 4.262 13 C -0.106 4.106 14 C -0.098 4.098 15 N -0.265 5.265 16 C 0.329 3.671 17 O -0.448 6.448 18 C -0.118 4.118 19 C -0.096 4.096 20 C -0.096 4.096 21 C -0.044 4.044 22 N -0.162 5.162 23 C -0.077 4.077 24 C -0.090 4.090 25 N -0.166 5.166 26 C -0.071 4.071 27 C -0.047 4.047 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.251 0.749 34 H 0.173 0.827 35 H 0.189 0.811 36 H 0.243 0.757 37 H 0.239 0.761 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 15.467 -4.930 -10.704 19.444 hybrid contribution -0.312 -1.656 0.156 1.692 sum 15.155 -6.585 -10.548 19.603 Atomic orbital electron populations 1.70574 1.09027 1.33525 1.30306 1.28307 0.95571 1.07145 0.89771 0.83053 0.74811 0.70009 0.79180 1.19990 1.19624 1.17325 1.20551 1.03140 0.94514 1.38776 0.89952 1.17797 0.92963 0.91757 0.91177 1.20804 1.03948 0.97572 1.02362 1.20682 0.98887 0.92627 0.98977 1.20601 1.03394 0.96890 1.05271 1.20892 0.95152 0.96840 0.97758 1.17730 0.98290 0.93776 1.00050 1.42662 1.28327 1.26947 1.28580 1.18642 0.82199 0.82054 0.84222 1.90708 1.75026 1.39899 1.39207 1.19823 0.96348 0.97719 0.97955 1.21224 0.98310 0.97409 0.92660 1.20923 0.92019 0.97260 0.99378 1.19826 0.95601 0.95653 0.93325 1.68819 1.02143 1.24093 1.21142 1.25063 0.97246 0.88286 0.97100 1.25000 0.94465 0.99950 0.89551 1.68699 1.02971 1.21469 1.23474 1.19385 0.96624 0.93853 0.97235 1.21137 0.90737 0.96567 0.96260 0.90083 0.88476 0.86478 0.86438 0.87227 0.74892 0.82659 0.81126 0.75667 0.76077 0.84352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.34 12.32 21.83 0.27 -41.07 16 2 C 0.01 0.46 4.95 85.26 0.42 0.88 16 3 Si 1.11 40.09 30.00 68.60 2.06 42.15 16 4 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 7 C -0.54 -26.68 8.35 23.38 0.20 -26.48 16 8 H 0.08 3.80 7.39 -2.91 -0.02 3.78 16 9 C 0.07 3.46 5.32 -21.17 -0.11 3.35 16 10 C -0.23 -11.56 7.88 22.46 0.18 -11.38 16 11 C -0.09 -4.31 9.97 22.01 0.22 -4.09 16 12 C -0.24 -11.08 10.04 22.41 0.22 -10.85 16 13 C -0.09 -4.18 8.68 22.37 0.19 -3.98 16 14 C 0.00 -0.20 6.33 38.92 0.25 0.04 16 15 N -0.62 -25.63 4.84 -304.89 -1.48 -27.10 16 16 C 0.54 21.55 7.61 86.77 0.66 22.21 16 17 O -0.57 -26.43 13.71 -3.93 -0.05 -26.48 16 18 C -0.11 -3.59 5.87 -20.11 -0.12 -3.71 16 19 C -0.08 -1.90 9.44 22.27 0.21 -1.69 16 20 C -0.08 -1.70 9.95 22.29 0.22 -1.48 16 21 C 0.08 1.90 6.59 40.33 0.27 2.17 16 22 N -0.45 -8.89 10.46 -187.88 -1.96 -10.85 16 23 C 0.10 1.17 11.21 85.13 0.95 2.12 16 24 C 0.09 1.14 11.22 85.14 0.95 2.10 16 25 N -0.45 -10.60 10.46 -188.11 -1.97 -12.57 16 26 C 0.05 1.38 6.58 40.25 0.27 1.64 16 27 C -0.03 -0.82 9.56 22.85 0.22 -0.60 16 28 H 0.29 15.25 6.63 -92.70 -0.61 14.64 16 29 H 0.10 5.10 6.45 -2.91 -0.02 5.08 16 30 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 31 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.11 5.30 6.19 -2.91 -0.02 5.28 16 33 H 0.41 14.83 5.95 -92.71 -0.55 14.28 16 34 H 0.16 3.37 6.35 -2.91 -0.02 3.35 16 35 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.23 0.23 8.06 -2.91 -0.02 0.20 16 37 H 0.22 0.65 8.06 -2.91 -0.02 0.62 16 38 H 0.14 4.58 7.61 -2.91 -0.02 4.56 16 Total: -1.00 -69.89 329.50 2.80 -67.09 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: 0.74 Total: 38.62 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 5.20 Total: -29.77 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -5.14 Total: -91.60 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.06 Total: 42.15 kcal Total: -69.89 2.80 -67.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344401020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.844 kcal (2) G-P(sol) polarization free energy of solvation -69.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds