Wall clock time and date at job start Tue Mar 31 2020 12:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48510 * 109.47170 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47042 * 30.00191 * 3 2 1 6 6 H 1.48503 * 109.47296 * 150.00364 * 3 2 1 7 7 C 1.37878 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46680 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00455 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99540 * 179.97438 * 11 10 9 14 14 C 1.46987 * 121.33780 * 0.02562 * 13 11 10 15 15 C 1.50341 * 109.19200 * 223.03243 * 14 13 11 16 16 C 1.31117 * 123.43022 * 349.40145 * 15 14 13 17 17 C 1.47806 * 117.80628 * 180.59357 * 16 15 14 18 18 C 1.39538 * 120.13101 * 64.73358 * 17 16 15 19 19 C 1.37948 * 119.87082 * 179.97438 * 18 17 16 20 20 C 1.38467 * 120.12863 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.86885 * 179.97438 * 20 19 18 22 22 C 1.38466 * 120.25480 * 0.27582 * 20 19 18 23 23 C 1.37949 * 120.13194 * 359.44505 * 22 20 19 24 24 C 1.49991 * 124.38296 * 0.30617 * 16 15 14 25 25 C 1.47311 * 121.33277 * 179.97438 * 13 11 10 26 26 H 0.97001 * 119.99546 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47357 * 59.99969 * 9 7 2 28 28 H 1.09004 * 109.47081 * 300.00254 * 9 7 2 29 29 H 1.08999 * 109.47100 * 60.00244 * 10 9 7 30 30 H 1.08994 * 109.46655 * 299.99624 * 10 9 7 31 31 H 1.09003 * 109.52127 * 343.12894 * 14 13 11 32 32 H 1.08996 * 109.52242 * 103.25361 * 14 13 11 33 33 H 1.07998 * 118.28199 * 169.15283 * 15 14 13 34 34 H 1.08010 * 120.06406 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.93651 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.93119 * 179.70008 * 22 20 19 37 37 H 1.08000 * 120.06394 * 180.24996 * 23 22 20 38 38 H 1.08999 * 109.31081 * 101.55657 * 24 16 15 39 39 H 1.09005 * 109.31070 * 221.17386 * 24 16 15 40 40 H 1.08997 * 109.76880 * 358.14094 * 25 13 11 41 41 H 1.09005 * 109.76304 * 237.37028 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 -0.0021 13 7 2.1654 -6.1345 -0.0018 14 6 3.6348 -6.1688 -0.0013 15 6 4.1050 -7.2173 -0.9709 16 6 3.3061 -8.0929 -1.5315 17 6 3.9039 -9.0779 -2.4572 18 6 4.8163 -10.0211 -1.9828 19 6 5.3705 -10.9384 -2.8515 20 6 5.0234 -10.9240 -4.1919 21 17 5.7254 -12.0810 -5.2791 22 6 4.1233 -9.9864 -4.6694 23 6 3.5583 -9.0679 -3.8092 24 6 1.8273 -8.1657 -1.2916 25 6 1.4587 -7.4270 -0.0019 26 1 -0.4849 0.8401 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8905 31 1 4.0221 -5.1942 -0.2986 32 1 3.9931 -6.4135 0.9986 33 1 5.1550 -7.2483 -1.2216 34 1 5.0881 -10.0330 -0.9376 35 1 6.0771 -11.6685 -2.4855 36 1 3.8600 -9.9769 -5.7168 37 1 2.8533 -8.3397 -4.1821 38 1 1.3031 -7.7093 -2.1312 39 1 1.5274 -9.2100 -1.2038 40 1 0.3823 -7.2586 0.0319 41 1 1.7675 -8.0160 0.8618 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360341630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:54 Heat of formation + Delta-G solvation = -14.627554 kcal Electronic energy + Delta-G solvation = -23049.538126 eV Core-core repulsion = 19533.715604 eV Total energy + Delta-G solvation = -3515.822521 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23470 -39.38745 -37.38526 -36.64059 -33.70800 -33.50778 -31.74708 -31.43534 -30.59311 -29.94914 -26.25399 -25.24707 -23.83572 -22.92968 -22.43495 -21.34843 -19.48466 -18.02741 -17.35875 -16.91759 -16.07245 -15.92041 -15.55258 -15.34813 -15.21560 -14.47526 -14.40641 -14.31266 -13.92885 -13.80382 -13.45798 -13.20354 -12.91543 -12.70980 -12.35511 -12.15668 -12.03932 -11.82632 -11.78307 -11.53588 -11.20011 -11.10803 -10.93462 -10.88546 -10.59584 -9.97079 -9.66948 -9.46442 -9.34919 -9.19301 -9.01347 -8.72760 -8.48155 -8.32083 -5.96575 -4.01011 0.63708 0.90822 1.75506 1.85943 3.17903 3.21069 3.22549 3.32859 3.39151 3.41611 4.23739 4.42205 4.46426 4.47578 4.65663 4.91210 4.94071 4.98550 5.05441 5.14193 5.26859 5.30831 5.38373 5.42513 5.47873 5.54549 5.58110 5.71480 5.83111 5.86646 5.95205 6.07500 6.18049 6.20349 6.25918 6.39159 6.56841 6.65346 6.88595 7.72479 7.73920 7.85351 8.06480 8.37571 8.71040 9.07335 9.62505 11.14352 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002172 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.937296 B =12886.508125 C =13431.967609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.517 3.483 12 O -0.532 6.532 13 N -0.628 5.628 14 C 0.140 3.860 15 C -0.148 4.148 16 C -0.084 4.084 17 C -0.041 4.041 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.039 4.039 21 Cl -0.075 7.075 22 C -0.108 4.108 23 C -0.095 4.095 24 C -0.092 4.092 25 C 0.112 3.888 26 H 0.261 0.739 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.279 -25.061 -5.691 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.307 3.693 12 O -0.407 6.407 13 N -0.365 5.365 14 C 0.018 3.982 15 C -0.166 4.166 16 C -0.085 4.085 17 C -0.041 4.041 18 C -0.116 4.116 19 C -0.128 4.128 20 C -0.065 4.065 21 Cl -0.046 7.046 22 C -0.127 4.127 23 C -0.113 4.113 24 C -0.130 4.130 25 C -0.011 4.011 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.502 -25.011 -5.784 28.130 hybrid contribution 0.726 0.673 -0.255 1.022 sum 12.228 -24.338 -6.039 27.899 Atomic orbital electron populations 1.70000 1.06050 1.26578 1.50163 1.25029 0.94833 0.99235 0.95319 0.86593 0.79769 0.83520 0.78065 1.20677 1.21226 1.19885 1.21211 0.92906 0.90991 1.51407 0.92611 1.18910 0.93177 0.89373 0.98614 1.21892 1.00762 0.91896 1.02291 1.21553 0.88379 0.85258 0.74082 1.90660 1.14356 1.87031 1.48689 1.48394 1.06227 1.05989 1.75887 1.20522 0.80392 0.99257 0.98076 1.22796 0.99652 0.96271 0.97910 1.19490 0.95406 0.95918 0.97653 1.19216 0.96071 0.95481 0.93376 1.21267 0.96230 0.94191 0.99878 1.20991 1.00646 0.99863 0.91317 1.21011 0.99486 0.94641 0.91377 1.98374 1.83320 1.58780 1.64148 1.21019 0.96464 0.94464 1.00722 1.21282 0.99463 0.98236 0.92310 1.20713 0.91880 1.01135 0.99302 1.21540 0.99350 0.84040 0.96190 0.92950 0.95856 0.95814 0.90209 0.90254 0.87964 0.90316 0.86270 0.84860 0.84883 0.84825 0.84805 0.90164 0.90151 0.88554 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.59 4.07 -27.88 -0.11 -2.70 16 11 C 0.52 9.95 7.72 -10.98 -0.08 9.86 16 12 O -0.53 -12.48 15.46 5.56 0.09 -12.39 16 13 N -0.63 -9.01 2.96 -174.13 -0.52 -9.52 16 14 C 0.14 1.51 6.49 -5.10 -0.03 1.48 16 15 C -0.15 -1.39 9.45 -36.23 -0.34 -1.73 16 16 C -0.08 -0.81 5.28 -102.80 -0.54 -1.35 16 17 C -0.04 -0.36 5.08 -105.01 -0.53 -0.90 16 18 C -0.10 -0.75 9.65 -39.20 -0.38 -1.13 16 19 C -0.11 -0.83 9.81 -39.60 -0.39 -1.22 16 20 C -0.04 -0.32 6.32 -39.41 -0.25 -0.57 16 21 Cl -0.08 -0.60 28.95 -51.86 -1.50 -2.10 16 22 C -0.11 -0.89 9.81 -39.60 -0.39 -1.28 16 23 C -0.09 -0.82 9.73 -39.20 -0.38 -1.20 16 24 C -0.09 -0.94 5.90 -28.16 -0.17 -1.11 16 25 C 0.11 1.36 6.49 -3.53 -0.02 1.34 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 29 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 30 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 31 H 0.10 1.10 6.24 -51.93 -0.32 0.78 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.12 0.95 7.94 -52.49 -0.42 0.53 16 34 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 40 H 0.10 1.35 7.07 -51.93 -0.37 0.98 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.63 360.15 -10.63 -44.26 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -5.69 Total: -2.36 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -4.15 Total: -13.24 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.22 Total: -36.13 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.63 -10.63 -44.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360341630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.630 kcal (2) G-P(sol) polarization free energy of solvation -33.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds