Wall clock time and date at job start Tue Mar 31 2020 12:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00252 * 2 1 4 4 H 1.48510 * 109.47170 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47042 * 30.00191 * 3 2 1 6 6 H 1.48503 * 109.47296 * 150.00364 * 3 2 1 7 7 C 1.37878 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46680 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00455 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99540 * 179.97438 * 11 10 9 14 14 C 1.46987 * 121.33780 * 0.02562 * 13 11 10 15 15 C 1.50341 * 109.19200 * 223.03243 * 14 13 11 16 16 C 1.31117 * 123.43022 * 349.40145 * 15 14 13 17 17 C 1.47806 * 117.80628 * 180.59357 * 16 15 14 18 18 C 1.39538 * 120.13101 * 64.73358 * 17 16 15 19 19 C 1.37948 * 119.87082 * 179.97438 * 18 17 16 20 20 C 1.38467 * 120.12863 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 119.86885 * 179.97438 * 20 19 18 22 22 C 1.38466 * 120.25480 * 0.27582 * 20 19 18 23 23 C 1.37949 * 120.13194 * 359.44505 * 22 20 19 24 24 C 1.49991 * 124.38296 * 0.30617 * 16 15 14 25 25 C 1.47311 * 121.33277 * 179.97438 * 13 11 10 26 26 H 0.97001 * 119.99546 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47357 * 59.99969 * 9 7 2 28 28 H 1.09004 * 109.47081 * 300.00254 * 9 7 2 29 29 H 1.08999 * 109.47100 * 60.00244 * 10 9 7 30 30 H 1.08994 * 109.46655 * 299.99624 * 10 9 7 31 31 H 1.09003 * 109.52127 * 343.12894 * 14 13 11 32 32 H 1.08996 * 109.52242 * 103.25361 * 14 13 11 33 33 H 1.07998 * 118.28199 * 169.15283 * 15 14 13 34 34 H 1.08010 * 120.06406 * 359.97438 * 18 17 16 35 35 H 1.08000 * 119.93651 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.93119 * 179.70008 * 22 20 19 37 37 H 1.08000 * 120.06394 * 180.24996 * 23 22 20 38 38 H 1.08999 * 109.31081 * 101.55657 * 24 16 15 39 39 H 1.09005 * 109.31070 * 221.17386 * 24 16 15 40 40 H 1.08997 * 109.76880 * 358.14094 * 25 13 11 41 41 H 1.09005 * 109.76304 * 237.37028 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 -0.0021 13 7 2.1654 -6.1345 -0.0018 14 6 3.6348 -6.1688 -0.0013 15 6 4.1050 -7.2173 -0.9709 16 6 3.3061 -8.0929 -1.5315 17 6 3.9039 -9.0779 -2.4572 18 6 4.8163 -10.0211 -1.9828 19 6 5.3705 -10.9384 -2.8515 20 6 5.0234 -10.9240 -4.1919 21 17 5.7254 -12.0810 -5.2791 22 6 4.1233 -9.9864 -4.6694 23 6 3.5583 -9.0679 -3.8092 24 6 1.8273 -8.1657 -1.2916 25 6 1.4587 -7.4270 -0.0019 26 1 -0.4849 0.8401 0.0004 27 1 0.6239 -2.5568 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8718 -3.6045 0.8895 30 1 2.8717 -3.6044 -0.8905 31 1 4.0221 -5.1942 -0.2986 32 1 3.9931 -6.4135 0.9986 33 1 5.1550 -7.2483 -1.2216 34 1 5.0881 -10.0330 -0.9376 35 1 6.0771 -11.6685 -2.4855 36 1 3.8600 -9.9769 -5.7168 37 1 2.8533 -8.3397 -4.1821 38 1 1.3031 -7.7093 -2.1312 39 1 1.5274 -9.2100 -1.2038 40 1 0.3823 -7.2586 0.0319 41 1 1.7675 -8.0160 0.8618 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360341630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:53 Heat of formation + Delta-G solvation = -32.664876 kcal Electronic energy + Delta-G solvation = -23050.320283 eV Core-core repulsion = 19533.715604 eV Total energy + Delta-G solvation = -3516.604678 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27112 -40.30656 -38.42591 -37.36261 -35.59436 -34.69958 -33.19083 -32.17727 -31.84228 -30.78837 -27.95457 -26.40391 -24.91739 -23.71088 -23.35981 -22.77759 -20.76462 -18.99647 -18.74884 -17.97143 -17.59350 -16.93980 -16.66844 -16.45346 -16.28881 -16.14530 -15.35457 -15.21031 -14.81816 -14.54310 -14.48335 -14.30576 -14.20826 -14.00330 -13.64681 -13.46805 -13.20255 -12.94001 -12.80885 -12.54612 -12.51529 -12.44152 -12.26251 -11.92213 -11.79949 -11.72938 -11.58978 -11.29423 -10.70574 -10.56137 -10.09377 -10.03559 -9.68257 -9.35532 -8.17142 -6.31184 0.01149 0.32309 1.13575 1.15278 1.42924 1.45669 1.56552 1.68685 2.02109 2.43937 2.61138 3.15866 3.49228 3.72432 3.86294 3.92636 4.02767 4.08759 4.17782 4.30630 4.34346 4.45287 4.48368 4.50992 4.59216 4.62078 4.70944 4.78553 4.83758 4.99293 5.01072 5.05994 5.17946 5.24843 5.45850 5.48228 5.52154 5.58817 5.63210 5.77073 5.85018 5.86050 6.18096 6.42725 6.87366 7.25707 7.39108 8.95549 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002172 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.937296 B =12886.508125 C =13431.967609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.042 3.958 10 C -0.116 4.116 11 C 0.514 3.486 12 O -0.590 6.590 13 N -0.617 5.617 14 C 0.131 3.869 15 C -0.143 4.143 16 C -0.088 4.088 17 C -0.049 4.049 18 C -0.093 4.093 19 C -0.111 4.111 20 C -0.048 4.048 21 Cl -0.076 7.076 22 C -0.114 4.114 23 C -0.105 4.105 24 C -0.086 4.086 25 C 0.108 3.892 26 H 0.262 0.738 27 H -0.020 1.020 28 H -0.018 1.018 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.725 -25.931 -5.406 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.096 0.904 9 C 0.005 3.995 10 C -0.155 4.155 11 C 0.305 3.695 12 O -0.470 6.470 13 N -0.351 5.351 14 C 0.010 3.990 15 C -0.161 4.161 16 C -0.088 4.088 17 C -0.049 4.049 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.074 4.074 21 Cl -0.047 7.047 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.014 4.014 26 H 0.071 0.929 27 H -0.002 1.002 28 H 0.000 1.000 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.160 0.840 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.089 0.911 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.016 -25.938 -5.502 30.472 hybrid contribution -0.348 0.836 -0.353 0.972 sum 14.669 -25.102 -5.856 29.657 Atomic orbital electron populations 1.70186 1.08334 1.27766 1.51517 1.26156 0.95734 1.03997 0.94697 0.85318 0.78721 0.77688 0.78493 1.19772 1.21283 1.17736 1.21709 0.94030 0.91499 1.50666 0.90450 1.18694 0.93705 0.92541 0.94581 1.21641 0.99297 0.90045 1.04540 1.21330 0.87585 0.86504 0.74127 1.90641 1.16641 1.87916 1.51804 1.48341 1.08069 1.05230 1.73482 1.20881 0.77605 1.00266 1.00223 1.22842 1.00664 0.95271 0.97315 1.19453 0.94747 0.96536 0.98114 1.19193 0.96732 0.95843 0.93110 1.21460 0.95457 0.93433 1.00789 1.21231 1.00665 1.00070 0.90941 1.21175 0.99654 0.94723 0.91891 1.98374 1.83291 1.58752 1.64255 1.21141 0.96514 0.94431 1.01212 1.21353 0.99774 0.98540 0.92668 1.20628 0.92673 1.01696 0.97383 1.21718 0.97918 0.83276 0.98518 0.92902 1.00190 0.99980 0.87629 0.88021 0.87570 0.87617 0.84081 0.82953 0.83182 0.84042 0.84991 0.91828 0.88230 0.91120 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.29 21.45 0.28 -59.40 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.54 -30.67 9.11 25.60 0.23 -30.44 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.93 16 9 C 0.04 2.37 4.26 29.85 0.13 2.50 16 10 C -0.12 -4.63 4.07 29.85 0.12 -4.51 16 11 C 0.51 20.14 7.72 87.66 0.68 20.82 16 12 O -0.59 -29.33 15.46 -3.02 -0.05 -29.37 16 13 N -0.62 -17.00 2.96 -823.22 -2.44 -19.44 16 14 C 0.13 2.42 6.49 85.43 0.55 2.97 16 15 C -0.14 -2.20 9.45 25.42 0.24 -1.96 16 16 C -0.09 -1.48 5.28 -17.71 -0.09 -1.57 16 17 C -0.05 -0.74 5.08 -20.12 -0.10 -0.85 16 18 C -0.09 -1.15 9.65 22.51 0.22 -0.93 16 19 C -0.11 -1.39 9.81 22.26 0.22 -1.17 16 20 C -0.05 -0.71 6.32 22.38 0.14 -0.57 16 21 Cl -0.08 -1.10 28.95 -2.72 -0.08 -1.18 16 22 C -0.11 -1.73 9.81 22.26 0.22 -1.52 16 23 C -0.11 -1.69 9.73 22.52 0.22 -1.47 16 24 C -0.09 -1.65 5.90 29.67 0.18 -1.47 16 25 C 0.11 2.53 6.49 86.27 0.56 3.09 16 26 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 27 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 28 H -0.02 -1.15 8.10 -2.38 -0.02 -1.17 16 29 H 0.11 3.66 8.13 -2.39 -0.02 3.64 16 30 H 0.10 3.59 7.57 -2.39 -0.02 3.57 16 31 H 0.11 1.92 6.24 -2.39 -0.01 1.90 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.14 1.64 7.94 -2.91 -0.02 1.62 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.52 8.13 -2.38 -0.02 1.50 16 40 H 0.07 2.05 7.07 -2.39 -0.02 2.03 16 41 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -76.86 360.15 4.74 -72.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.03 Total: 8.23 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.97 Total: -17.11 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.15 Total: -78.84 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -76.86 4.74 -72.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360341630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.456 kcal (2) G-P(sol) polarization free energy of solvation -76.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds