Wall clock time and date at job start Tue Mar 31 2020 13:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 119.99803 * 2 1 4 4 H 1.48492 * 109.47283 * 269.99461 * 3 2 1 5 5 H 1.48500 * 109.47300 * 30.00016 * 3 2 1 6 6 H 1.48505 * 109.46815 * 149.99942 * 3 2 1 7 7 C 1.39897 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99753 * 175.19648 * 7 2 1 9 9 C 1.41149 * 120.00077 * 355.19863 * 7 2 1 10 10 C 1.40894 * 120.15574 * 214.92305 * 9 7 2 11 11 C 1.36375 * 119.84865 * 179.97438 * 10 9 7 12 12 C 1.39470 * 120.17875 * 359.97438 * 11 10 9 13 13 N 1.39264 * 119.83919 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99944 * 335.09182 * 13 12 11 15 15 O 1.21279 * 120.00055 * 354.43357 * 14 13 12 16 16 C 1.50695 * 119.99958 * 174.42828 * 14 13 12 17 17 C 1.52996 * 109.47292 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.24538 * 54.66091 * 17 16 14 19 19 C 1.50060 * 109.36195 * 295.00601 * 17 16 14 20 20 C 1.29445 * 124.07812 * 222.66586 * 19 17 16 21 21 C 1.50070 * 124.07422 * 0.47770 * 20 19 17 22 22 C 1.53024 * 110.03776 * 342.92472 * 21 20 19 23 23 C 1.53025 * 109.36211 * 174.31107 * 17 16 14 24 24 C 1.39576 * 120.32183 * 0.27334 * 12 11 10 25 25 Cl 1.73603 * 119.92707 * 179.70160 * 24 12 11 26 26 C 1.36481 * 120.14671 * 359.44605 * 24 12 11 27 27 H 0.97002 * 119.99920 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.07886 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.91001 * 180.02562 * 11 10 9 30 30 H 0.97004 * 120.00147 * 155.09172 * 13 12 11 31 31 H 1.09005 * 109.47163 * 60.00321 * 16 14 13 32 32 H 1.09002 * 109.47495 * 300.00511 * 16 14 13 33 33 H 1.08000 * 117.96583 * 42.67441 * 19 17 16 34 34 H 1.08006 * 117.96514 * 180.47066 * 20 19 17 35 35 H 1.09007 * 109.35438 * 103.05902 * 21 20 19 36 36 H 1.08997 * 109.35892 * 222.78279 * 21 20 19 37 37 H 1.08993 * 109.64149 * 169.04517 * 22 21 20 38 38 H 1.08995 * 109.64144 * 289.68232 * 22 21 20 39 39 H 1.08996 * 109.64211 * 289.33145 * 23 17 16 40 40 H 1.08998 * 109.64101 * 49.75086 * 23 17 16 41 41 H 1.07996 * 120.09374 * 180.24480 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0854 -1.2132 -0.0778 9 6 1.3062 -2.4317 0.1034 10 6 1.8683 -3.5144 0.8084 11 6 1.1843 -4.6904 0.9043 12 6 -0.0691 -4.8231 0.3072 13 7 -0.7612 -6.0273 0.4091 14 6 -0.0873 -7.1768 0.6117 15 8 1.1255 -7.1781 0.6046 16 6 -0.8407 -8.4604 0.8473 17 6 0.1535 -9.6061 1.0466 18 1 0.8448 -9.3465 1.8484 19 6 0.9234 -9.8233 -0.2230 20 6 1.1939 -10.9889 -0.7168 21 6 0.7665 -12.2857 -0.0941 22 6 0.3642 -12.0593 1.3648 23 6 -0.6078 -10.8783 1.4256 24 6 -0.6305 -3.7569 -0.3973 25 17 -2.1879 -3.9360 -1.1431 26 6 0.0399 -2.5723 -0.4967 27 1 -0.4850 0.8401 -0.0004 28 1 2.8382 -3.4131 1.2725 29 1 1.6140 -5.5208 1.4448 30 1 -1.7283 -6.0388 0.3342 31 1 -1.4727 -8.6742 -0.0147 32 1 -1.4621 -8.3591 1.7371 33 1 1.2738 -8.9531 -0.7580 34 1 1.7624 -11.0308 -1.6342 35 1 -0.0837 -12.6881 -0.6450 36 1 1.5925 -12.9957 -0.1351 37 1 -0.1248 -12.9527 1.7529 38 1 1.2503 -11.8355 1.9587 39 1 -1.0044 -10.7807 2.4361 40 1 -1.4270 -11.0377 0.7244 41 1 -0.3971 -1.7466 -1.0387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452656776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:48 Heat of formation + Delta-G solvation = -27.397110 kcal Electronic energy + Delta-G solvation = -23590.971371 eV Core-core repulsion = 20074.595120 eV Total energy + Delta-G solvation = -3516.376251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.09584 -38.56928 -37.34029 -35.54778 -34.48846 -33.10754 -32.60879 -31.05784 -29.48217 -29.22149 -27.33762 -24.96272 -22.65951 -22.29805 -21.64716 -20.78871 -19.57564 -17.98628 -17.60043 -16.87458 -16.51145 -15.91273 -15.32953 -15.18500 -14.36937 -14.29944 -14.14467 -13.76771 -13.23719 -13.01333 -12.93746 -12.75025 -12.62115 -12.37224 -12.25828 -12.14405 -11.70160 -11.51073 -11.38877 -11.13732 -10.98731 -10.96487 -10.64273 -10.48209 -10.35793 -10.16532 -10.06553 -9.92735 -9.48516 -9.19606 -8.95889 -8.79968 -7.57027 -6.97986 -6.72882 -4.45853 2.32663 2.38411 2.82018 2.97774 3.05544 3.09279 3.13130 3.30272 3.67848 3.90747 4.55333 4.60929 4.63383 4.72593 4.98603 5.08536 5.21997 5.37159 5.37711 5.44487 5.48819 5.59756 5.60119 5.70070 5.78097 5.82095 5.98031 6.18210 6.24437 6.30154 6.50564 6.61094 6.77314 6.86626 7.00245 7.02135 7.14112 7.30981 7.56364 7.65289 7.86991 8.08108 8.14850 8.42616 8.65867 8.78066 8.81265 10.17853 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002823 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.721779 B = 9917.839682 C =10627.148681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.105 3.895 10 C -0.198 4.198 11 C -0.086 4.086 12 C 0.019 3.981 13 N -0.651 5.651 14 C 0.500 3.500 15 O -0.528 6.528 16 C -0.133 4.133 17 C -0.042 4.042 18 H 0.089 0.911 19 C -0.129 4.129 20 C -0.176 4.176 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.028 4.028 25 Cl -0.121 7.121 26 C -0.133 4.133 27 H 0.281 0.719 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -15.993 1.460 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.147 4.147 3 Si 0.743 3.257 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.101 3.899 10 C -0.218 4.218 11 C -0.106 4.106 12 C -0.075 4.075 13 N -0.294 5.294 14 C 0.287 3.713 15 O -0.405 6.405 16 C -0.173 4.173 17 C -0.061 4.061 18 H 0.107 0.893 19 C -0.147 4.147 20 C -0.194 4.194 21 C -0.125 4.125 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.056 4.056 25 Cl -0.092 7.092 26 C -0.154 4.154 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.697 -15.863 1.408 16.349 hybrid contribution -0.380 0.929 -0.171 1.019 sum -4.077 -14.934 1.237 15.530 Atomic orbital electron populations 1.69738 1.07308 1.29113 1.37150 1.25920 0.94994 1.01368 0.92401 0.86145 0.80212 0.80199 0.79189 1.19410 1.20203 1.18622 1.19490 0.94950 0.89909 1.44288 0.90166 1.17605 0.91263 0.92336 0.88648 1.20936 1.01356 0.94539 1.05013 1.20527 0.93111 0.97876 0.99059 1.16987 0.96399 0.85271 1.08809 1.43093 1.10025 1.05642 1.70653 1.20579 0.88446 0.84763 0.77513 1.90643 1.13812 1.85928 1.50117 1.21698 0.99120 0.92596 1.03870 1.19828 0.95866 0.93187 0.97215 0.89321 1.22233 0.97905 0.97865 0.96697 1.21988 1.02568 0.94158 1.00715 1.20419 1.00675 0.95881 0.95514 1.21531 0.99520 0.98003 0.96656 1.21618 0.98031 0.94238 1.01453 1.20408 0.86891 0.96707 1.01581 1.98249 1.30806 1.97907 1.82274 1.21214 0.96931 0.94718 1.02497 0.90826 0.87909 0.85661 0.76656 0.89091 0.88846 0.86893 0.88294 0.91351 0.91537 0.91894 0.91678 0.91625 0.91645 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.31 10.59 55.55 0.59 -19.73 16 2 C 0.07 1.69 5.42 -17.34 -0.09 1.60 16 3 Si 0.92 18.44 29.56 -169.99 -5.03 13.42 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.73 9.02 -37.86 -0.34 -12.07 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 C 0.10 2.71 5.55 -106.80 -0.59 2.11 16 10 C -0.20 -4.80 9.74 -39.25 -0.38 -5.19 16 11 C -0.09 -1.97 8.63 -39.79 -0.34 -2.31 16 12 C 0.02 0.42 6.44 -83.53 -0.54 -0.12 16 13 N -0.65 -11.38 5.16 -9.71 -0.05 -11.43 16 14 C 0.50 8.16 7.26 -10.99 -0.08 8.08 16 15 O -0.53 -10.36 11.42 5.56 0.06 -10.30 16 16 C -0.13 -1.51 5.13 -27.89 -0.14 -1.66 16 17 C -0.04 -0.49 2.11 -92.07 -0.19 -0.68 16 18 H 0.09 1.14 7.94 -51.93 -0.41 0.73 16 19 C -0.13 -1.67 8.42 -35.90 -0.30 -1.97 16 20 C -0.18 -1.98 9.80 -35.90 -0.35 -2.33 16 21 C -0.09 -0.79 6.13 -28.18 -0.17 -0.96 16 22 C -0.12 -1.02 5.98 -26.68 -0.16 -1.18 16 23 C -0.12 -1.02 5.30 -26.68 -0.14 -1.17 16 24 C -0.03 -0.63 6.30 -39.72 -0.25 -0.88 16 25 Cl -0.12 -2.30 27.75 -51.86 -1.44 -3.74 16 26 C -0.13 -3.36 8.38 -39.23 -0.33 -3.68 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.13 2.81 5.77 -52.49 -0.30 2.51 16 30 H 0.40 5.98 7.74 -40.82 -0.32 5.67 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.76 6.54 -52.49 -0.34 1.42 16 34 H 0.10 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.14 3.79 6.13 -52.49 -0.32 3.47 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -27.61 346.86 -10.52 -38.13 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.47 Total: 10.82 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -4.42 Total: -22.40 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.54 Total: -31.16 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.06 Total: -10.30 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -1.44 Total: -3.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.61 -10.52 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452656776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.730 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds