Wall clock time and date at job start Tue Mar 31 2020 13:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86801 * 119.99803 * 2 1 4 4 H 1.48492 * 109.47283 * 269.99461 * 3 2 1 5 5 H 1.48500 * 109.47300 * 30.00016 * 3 2 1 6 6 H 1.48505 * 109.46815 * 149.99942 * 3 2 1 7 7 C 1.39897 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99753 * 175.19648 * 7 2 1 9 9 C 1.41149 * 120.00077 * 355.19863 * 7 2 1 10 10 C 1.40894 * 120.15574 * 214.92305 * 9 7 2 11 11 C 1.36375 * 119.84865 * 179.97438 * 10 9 7 12 12 C 1.39470 * 120.17875 * 359.97438 * 11 10 9 13 13 N 1.39264 * 119.83919 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99944 * 335.09182 * 13 12 11 15 15 O 1.21279 * 120.00055 * 354.43357 * 14 13 12 16 16 C 1.50695 * 119.99958 * 174.42828 * 14 13 12 17 17 C 1.52996 * 109.47292 * 179.97438 * 16 14 13 18 18 H 1.09006 * 109.24538 * 54.66091 * 17 16 14 19 19 C 1.50060 * 109.36195 * 295.00601 * 17 16 14 20 20 C 1.29445 * 124.07812 * 222.66586 * 19 17 16 21 21 C 1.50070 * 124.07422 * 0.47770 * 20 19 17 22 22 C 1.53024 * 110.03776 * 342.92472 * 21 20 19 23 23 C 1.53025 * 109.36211 * 174.31107 * 17 16 14 24 24 C 1.39576 * 120.32183 * 0.27334 * 12 11 10 25 25 Cl 1.73603 * 119.92707 * 179.70160 * 24 12 11 26 26 C 1.36481 * 120.14671 * 359.44605 * 24 12 11 27 27 H 0.97002 * 119.99920 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.07886 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.91001 * 180.02562 * 11 10 9 30 30 H 0.97004 * 120.00147 * 155.09172 * 13 12 11 31 31 H 1.09005 * 109.47163 * 60.00321 * 16 14 13 32 32 H 1.09002 * 109.47495 * 300.00511 * 16 14 13 33 33 H 1.08000 * 117.96583 * 42.67441 * 19 17 16 34 34 H 1.08006 * 117.96514 * 180.47066 * 20 19 17 35 35 H 1.09007 * 109.35438 * 103.05902 * 21 20 19 36 36 H 1.08997 * 109.35892 * 222.78279 * 21 20 19 37 37 H 1.08993 * 109.64149 * 169.04517 * 22 21 20 38 38 H 1.08995 * 109.64144 * 289.68232 * 22 21 20 39 39 H 1.08996 * 109.64211 * 289.33145 * 23 17 16 40 40 H 1.08998 * 109.64101 * 49.75086 * 23 17 16 41 41 H 1.07996 * 120.09374 * 180.24480 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0854 -1.2132 -0.0778 9 6 1.3062 -2.4317 0.1034 10 6 1.8683 -3.5144 0.8084 11 6 1.1843 -4.6904 0.9043 12 6 -0.0691 -4.8231 0.3072 13 7 -0.7612 -6.0273 0.4091 14 6 -0.0873 -7.1768 0.6117 15 8 1.1255 -7.1781 0.6046 16 6 -0.8407 -8.4604 0.8473 17 6 0.1535 -9.6061 1.0466 18 1 0.8448 -9.3465 1.8484 19 6 0.9234 -9.8233 -0.2230 20 6 1.1939 -10.9889 -0.7168 21 6 0.7665 -12.2857 -0.0941 22 6 0.3642 -12.0593 1.3648 23 6 -0.6078 -10.8783 1.4256 24 6 -0.6305 -3.7569 -0.3973 25 17 -2.1879 -3.9360 -1.1431 26 6 0.0399 -2.5723 -0.4967 27 1 -0.4850 0.8401 -0.0004 28 1 2.8382 -3.4131 1.2725 29 1 1.6140 -5.5208 1.4448 30 1 -1.7283 -6.0388 0.3342 31 1 -1.4727 -8.6742 -0.0147 32 1 -1.4621 -8.3591 1.7371 33 1 1.2738 -8.9531 -0.7580 34 1 1.7624 -11.0308 -1.6342 35 1 -0.0837 -12.6881 -0.6450 36 1 1.5925 -12.9957 -0.1351 37 1 -0.1248 -12.9527 1.7529 38 1 1.2503 -11.8355 1.9587 39 1 -1.0044 -10.7807 2.4361 40 1 -1.4270 -11.0377 0.7244 41 1 -0.3971 -1.7466 -1.0387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452656776.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:47 Heat of formation + Delta-G solvation = -40.008689 kcal Electronic energy + Delta-G solvation = -23591.518250 eV Core-core repulsion = 20074.595120 eV Total energy + Delta-G solvation = -3516.923130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47529 -39.76246 -38.80295 -37.25529 -36.13227 -34.78737 -33.60490 -31.85875 -31.31802 -30.94234 -28.47833 -26.60337 -23.93892 -23.31407 -22.97942 -22.39553 -21.01001 -19.43719 -18.82392 -18.40709 -17.86586 -17.19165 -16.81980 -16.47673 -15.97462 -15.46272 -15.36291 -15.00776 -14.71853 -14.52519 -14.40437 -14.03491 -13.70356 -13.55479 -13.50427 -13.17916 -13.14149 -12.96152 -12.82160 -12.68071 -12.37066 -12.17780 -12.04506 -11.88453 -11.69102 -11.62304 -11.34581 -11.24110 -10.99443 -10.83826 -10.37544 -9.85073 -9.41736 -8.77321 -8.55239 -6.37880 0.59677 0.93907 1.37069 1.40623 1.43300 1.44729 1.54218 1.82451 2.22789 2.31807 2.72794 3.53449 3.68785 3.83129 3.91067 4.04217 4.31147 4.33033 4.42656 4.53020 4.54574 4.69174 4.73521 4.82203 4.84977 4.90603 4.94352 4.99570 5.10742 5.13319 5.22724 5.26484 5.28682 5.45080 5.46622 5.53453 5.69778 5.82203 5.85931 6.03006 6.12658 6.22798 6.51389 6.65750 6.85747 6.89926 7.33759 8.37431 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.002823 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.721779 B = 9917.839682 C =10627.148681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.030 3.970 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.491 4.491 8 H 0.078 0.922 9 C 0.075 3.925 10 C -0.209 4.209 11 C -0.095 4.095 12 C 0.034 3.966 13 N -0.649 5.649 14 C 0.497 3.503 15 O -0.562 6.562 16 C -0.122 4.122 17 C -0.040 4.040 18 H 0.068 0.932 19 C -0.154 4.154 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.110 4.110 24 C -0.036 4.036 25 Cl -0.087 7.087 26 C -0.150 4.150 27 H 0.287 0.713 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.413 0.587 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -17.928 1.891 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.183 4.183 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.521 4.521 8 H 0.096 0.904 9 C 0.072 3.928 10 C -0.229 4.229 11 C -0.115 4.115 12 C -0.061 4.061 13 N -0.294 5.294 14 C 0.288 3.712 15 O -0.441 6.441 16 C -0.161 4.161 17 C -0.058 4.058 18 H 0.086 0.914 19 C -0.172 4.172 20 C -0.183 4.183 21 C -0.125 4.125 22 C -0.158 4.158 23 C -0.147 4.147 24 C -0.065 4.065 25 Cl -0.058 7.058 26 C -0.171 4.171 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.147 0.853 30 H 0.250 0.750 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.289 -17.839 1.838 18.698 hybrid contribution 0.063 1.324 -0.360 1.373 sum -5.226 -16.516 1.478 17.386 Atomic orbital electron populations 1.69806 1.08573 1.30256 1.37633 1.26748 0.95792 1.04346 0.91439 0.85087 0.78780 0.75749 0.79401 1.18707 1.19299 1.18443 1.19705 0.95073 0.90931 1.46406 0.90399 1.17899 0.92174 0.93088 0.89681 1.21083 1.01792 0.94835 1.05166 1.20650 0.93824 0.97508 0.99507 1.17072 0.95891 0.86567 1.06616 1.43146 1.10681 1.04621 1.70955 1.21584 0.88327 0.85708 0.75629 1.90633 1.15826 1.86490 1.51151 1.21772 0.98945 0.89203 1.06190 1.19814 0.95680 0.94689 0.95652 0.91401 1.22119 1.00042 0.97152 0.97927 1.22239 1.00882 0.94931 1.00269 1.20495 1.01661 0.94421 0.95925 1.21562 0.99305 0.98830 0.96102 1.21608 0.97938 0.92504 1.02668 1.20436 0.88317 0.96179 1.01551 1.98244 1.28193 1.97775 1.81628 1.21109 0.97367 0.95325 1.03322 0.90232 0.87484 0.85296 0.74971 0.86825 0.85674 0.90524 0.88541 0.89726 0.90489 0.89643 0.92736 0.89970 0.90406 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.12 10.59 21.82 0.23 -42.89 16 2 C 0.03 1.48 5.42 85.24 0.46 1.94 16 3 Si 0.99 38.25 29.56 68.60 2.03 40.28 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 7 C -0.49 -26.26 9.02 23.39 0.21 -26.05 16 8 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 9 C 0.07 4.02 5.55 -21.28 -0.12 3.90 16 10 C -0.21 -10.52 9.74 22.49 0.22 -10.30 16 11 C -0.09 -4.45 8.63 22.13 0.19 -4.26 16 12 C 0.03 1.47 6.44 38.58 0.25 1.72 16 13 N -0.65 -21.96 5.16 -303.03 -1.56 -23.52 16 14 C 0.50 15.80 7.26 87.65 0.64 16.43 16 15 O -0.56 -22.38 11.42 -3.03 -0.03 -22.42 16 16 C -0.12 -2.46 5.13 29.85 0.15 -2.30 16 17 C -0.04 -0.84 2.11 -11.73 -0.02 -0.87 16 18 H 0.07 1.72 7.94 -2.38 -0.02 1.70 16 19 C -0.15 -3.93 8.42 27.03 0.23 -3.70 16 20 C -0.17 -3.52 9.80 27.04 0.27 -3.26 16 21 C -0.09 -1.33 6.13 29.66 0.18 -1.15 16 22 C -0.12 -1.67 5.98 30.63 0.18 -1.49 16 23 C -0.11 -1.56 5.30 30.63 0.16 -1.40 16 24 C -0.04 -1.66 6.30 22.18 0.14 -1.52 16 25 Cl -0.09 -3.23 27.75 -2.72 -0.08 -3.31 16 26 C -0.15 -7.84 8.38 22.50 0.19 -7.65 16 27 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 28 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 29 H 0.13 5.93 5.77 -2.91 -0.02 5.91 16 30 H 0.41 11.50 7.74 -92.71 -0.72 10.79 16 31 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 2.49 6.54 -2.91 -0.02 2.47 16 34 H 0.10 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 41 H 0.13 7.00 6.13 -2.91 -0.02 6.98 16 Total: -1.00 -62.68 346.86 4.25 -58.44 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.34 Total: 33.36 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 3.33 Total: -39.94 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -1.33 Total: -66.41 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.03 Total: -22.42 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 17 Polarization: -3.23 SS G_CDS: -0.08 Total: -3.31 kcal Total: -62.68 4.25 -58.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452656776.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.428 kcal (2) G-P(sol) polarization free energy of solvation -62.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds