Wall clock time and date at job start Tue Mar 31 2020 13:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99601 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99458 * 3 2 1 6 6 H 1.48499 * 109.47135 * 149.99799 * 3 2 1 7 7 C 1.37876 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00020 * 89.99804 * 12 11 10 14 14 C 1.50694 * 109.47180 * 90.00049 * 13 12 11 15 15 C 1.34517 * 125.78700 * 89.71688 * 14 13 12 16 16 C 1.41390 * 106.83823 * 179.88974 * 15 14 13 17 17 C 1.34511 * 106.84253 * 0.37229 * 16 15 14 18 18 O 1.34307 * 125.79039 * 270.02516 * 14 13 12 19 19 C 1.39677 * 120.00191 * 270.00195 * 12 11 10 20 20 C 1.38939 * 120.06456 * 359.72271 * 19 12 11 21 21 C 1.38089 * 119.95125 * 179.72106 * 20 19 12 22 22 C 1.38293 * 120.08374 * 0.55762 * 21 20 19 23 23 C 1.38378 * 120.13644 * 359.72002 * 22 21 20 24 24 Cl 1.73598 * 119.97565 * 180.02562 * 23 22 21 25 25 C 1.38245 * 120.04727 * 359.97438 * 23 22 21 26 26 H 0.96991 * 119.99882 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 29 29 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 30 30 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 31 31 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 32 32 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 33 33 H 1.09000 * 109.47567 * 210.00198 * 13 12 11 34 34 H 1.09002 * 109.47279 * 329.99646 * 13 12 11 35 35 H 1.07993 * 126.58596 * 0.02614 * 15 14 13 36 36 H 1.08003 * 126.57878 * 180.16252 * 16 15 14 37 37 H 1.07995 * 125.79249 * 179.74616 * 17 16 15 38 38 H 1.08002 * 120.02973 * 359.97438 * 20 19 12 39 39 H 1.07996 * 119.96120 * 180.25101 * 21 20 19 40 40 H 1.08003 * 119.92879 * 179.74443 * 22 21 20 41 41 H 1.08000 * 120.03751 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5117 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0401 -4.0176 0.0027 13 6 6.2852 -4.7083 -1.2657 14 6 7.7088 -4.4715 -1.6996 15 6 8.7673 -5.2358 -1.3758 16 6 9.8975 -4.6535 -1.9946 17 6 9.4633 -3.5637 -2.6526 18 8 8.1367 -3.4583 -2.4705 19 6 6.2719 -4.6760 1.2126 20 6 6.0452 -4.0204 2.4164 21 6 6.2697 -4.6754 3.6111 22 6 6.7307 -5.9792 3.6109 23 6 6.9631 -6.6337 2.4140 24 17 7.5412 -8.2706 2.4186 25 6 6.7343 -5.9853 1.2147 26 1 -0.4849 0.8400 -0.0004 27 1 3.8745 -0.6800 0.8911 28 1 3.8753 -0.6803 -0.8888 29 1 3.6587 -3.1502 -0.8892 30 1 3.6580 -3.1505 0.8907 31 1 5.9157 -2.1223 -0.8873 32 1 5.9142 -2.1228 0.8927 33 1 6.1182 -5.7775 -1.1355 34 1 5.6050 -4.3243 -2.0259 35 1 8.7559 -6.1249 -0.7629 36 1 10.9148 -5.0128 -1.9452 37 1 10.0772 -2.8877 -3.2292 38 1 5.6899 -3.0005 2.4178 39 1 6.0897 -4.1673 4.5469 40 1 6.9094 -6.4878 4.5468 41 1 6.9153 -6.4964 0.2807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489197010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:26 Heat of formation + Delta-G solvation = 19.747729 kcal Electronic energy + Delta-G solvation = -23803.521486 eV Core-core repulsion = 20289.189589 eV Total energy + Delta-G solvation = -3514.331897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.46533 -40.72221 -38.16755 -37.11309 -35.74510 -34.14574 -33.64711 -32.16636 -31.57686 -30.33971 -28.61657 -26.54773 -24.76124 -23.40563 -22.60411 -22.35013 -21.82772 -21.04625 -19.03264 -18.85242 -18.10200 -17.35309 -16.74470 -16.51661 -16.23385 -16.15088 -15.79813 -15.25904 -15.08632 -14.83814 -14.70473 -14.60648 -14.10693 -13.78078 -13.68578 -13.51871 -13.28940 -13.05782 -12.74235 -12.62726 -12.57541 -12.53579 -12.14238 -11.83391 -11.77573 -11.74591 -11.46049 -11.36310 -10.84883 -10.76081 -10.74945 -9.72234 -9.44932 -8.36567 -8.27875 -6.32686 0.29524 0.54468 0.73982 1.16650 1.37358 1.39147 1.50912 1.66664 2.09541 2.29775 2.37190 2.81837 3.07447 3.74171 3.84781 3.91617 4.06450 4.15312 4.20631 4.26330 4.30628 4.33316 4.45689 4.54930 4.58078 4.63744 4.73118 4.88881 4.89698 4.93975 5.01614 5.06314 5.20112 5.21514 5.36577 5.50597 5.55333 5.57868 5.61181 5.66628 5.75222 6.16484 6.23484 6.30905 6.45665 6.75841 7.31978 8.88815 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.003749 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.184913 B = 7467.172818 C = 9357.507001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.531 4.531 8 H 0.027 0.973 9 C -0.009 4.009 10 C -0.104 4.104 11 C 0.131 3.869 12 N -0.616 5.616 13 C 0.197 3.803 14 C -0.047 4.047 15 C -0.200 4.200 16 C -0.228 4.228 17 C -0.042 4.042 18 O -0.193 6.193 19 C 0.223 3.777 20 C -0.204 4.204 21 C -0.060 4.060 22 C -0.176 4.176 23 C 0.005 3.995 24 Cl -0.072 7.072 25 C -0.197 4.197 26 H 0.266 0.734 27 H 0.024 0.976 28 H 0.021 0.979 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.232 0.768 38 H 0.127 0.873 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.987 -12.097 0.938 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.165 1.165 7 C -0.569 4.569 8 H 0.045 0.955 9 C -0.047 4.047 10 C -0.143 4.143 11 C 0.008 3.992 12 N -0.324 5.324 13 C 0.074 3.926 14 C -0.098 4.098 15 C -0.220 4.220 16 C -0.247 4.247 17 C -0.109 4.109 18 O -0.089 6.089 19 C 0.120 3.880 20 C -0.226 4.226 21 C -0.079 4.079 22 C -0.197 4.197 23 C -0.022 4.022 24 Cl -0.043 7.043 25 C -0.220 4.220 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.249 0.751 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.162 0.838 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 22.661 -11.826 0.655 25.569 hybrid contribution -0.192 0.455 -0.081 0.500 sum 22.469 -11.371 0.574 25.189 Atomic orbital electron populations 1.70079 1.08446 1.28146 1.52801 1.26055 0.95599 1.03645 0.94120 0.85637 0.79638 0.78030 0.79218 1.19205 1.21198 1.16500 1.21482 0.92291 0.92877 1.50264 0.95467 1.19459 0.93724 0.94687 0.96782 1.21673 0.94628 0.97252 1.00779 1.21521 0.93150 0.81409 1.03098 1.46709 1.69763 1.13669 1.02273 1.19908 0.87674 0.99470 0.85558 1.23238 0.98255 0.89938 0.98378 1.21859 0.92169 1.03203 1.04781 1.22154 1.01012 0.98418 1.03105 1.24766 0.80848 1.01310 1.03982 1.84047 1.24874 1.44169 1.55794 1.17804 0.92900 0.91041 0.86224 1.21070 1.08296 1.01623 0.91600 1.21115 0.94976 0.93663 0.98133 1.21016 1.05790 0.95783 0.97082 1.20688 1.00486 0.86159 0.94842 1.98354 1.87237 1.19722 1.98973 1.20530 1.09514 0.94039 0.97900 0.92558 0.95798 0.96055 0.93391 0.93588 0.90363 0.90191 0.86103 0.88575 0.82991 0.81623 0.75134 0.85532 0.83171 0.83834 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 2 C 0.00 0.13 5.47 84.65 0.46 0.59 16 3 Si 0.95 43.64 27.47 68.60 1.88 45.52 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.53 -30.49 9.66 25.60 0.25 -30.25 16 8 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.10 -3.88 5.48 30.60 0.17 -3.71 16 11 C 0.13 3.81 5.17 86.38 0.45 4.26 16 12 N -0.62 -15.98 2.59 -701.66 -1.82 -17.79 16 13 C 0.20 4.41 5.69 85.63 0.49 4.90 16 14 C -0.05 -1.08 6.90 24.83 0.17 -0.91 16 15 C -0.20 -4.20 10.46 22.19 0.23 -3.97 16 16 C -0.23 -4.20 10.91 22.19 0.24 -3.96 16 17 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 18 O -0.19 -4.65 10.65 -2.61 -0.03 -4.68 16 19 C 0.22 5.74 6.55 38.21 0.25 5.99 16 20 C -0.20 -5.24 9.21 22.40 0.21 -5.03 16 21 C -0.06 -1.31 10.04 22.25 0.22 -1.09 16 22 C -0.18 -3.69 9.83 22.32 0.22 -3.47 16 23 C 0.01 0.12 6.32 22.30 0.14 0.26 16 24 Cl -0.07 -1.41 28.95 -2.72 -0.08 -1.49 16 25 C -0.20 -4.55 8.78 22.42 0.20 -4.35 16 26 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 28 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.08 2.24 6.18 -2.39 -0.01 2.22 16 33 H 0.12 2.26 6.20 -2.39 -0.01 2.24 16 34 H 0.10 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.15 2.88 7.11 -2.91 -0.02 2.86 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.23 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.13 3.36 6.13 -2.91 -0.02 3.34 16 39 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 41 H 0.14 2.82 5.04 -2.91 -0.01 2.80 16 Total: -1.00 -68.55 357.35 5.87 -62.69 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.98 Total: 16.52 kcal Atomic # 6 Polarization: -45.57 SS G_CDS: 4.62 Total: -40.95 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.52 Total: -77.60 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.03 Total: -4.68 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -68.55 5.87 -62.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489197010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.436 kcal (2) G-P(sol) polarization free energy of solvation -68.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds