Wall clock time and date at job start Tue Mar 31 2020 12:11:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47208 * 179.97438 * 2 1
4 4 N 1.46496 * 109.46996 * 325.44599 * 3 2 1
5 5 C 1.37094 * 120.00279 * 264.39343 * 4 3 2
6 6 H 1.08005 * 119.99579 * 196.18068 * 5 4 3
7 7 C 1.38945 * 120.00232 * 16.17176 * 5 4 3
8 8 N 1.31421 * 119.99718 * 20.86098 * 7 5 4
9 9 Si 1.86803 * 120.00419 * 200.85292 * 7 5 4
10 10 H 1.48498 * 109.46544 * 84.94838 * 9 7 5
11 11 H 1.48494 * 109.47029 * 204.94638 * 9 7 5
12 12 H 1.48491 * 109.47117 * 324.94789 * 9 7 5
13 13 C 1.34777 * 119.99495 * 84.39511 * 4 3 2
14 14 O 1.21295 * 119.99741 * 180.02562 * 13 4 3
15 15 C 1.50700 * 120.00386 * 359.97438 * 13 4 3
16 16 S 1.81402 * 109.47329 * 180.02562 * 15 13 4
17 17 C 1.76193 * 102.99978 * 180.02562 * 16 15 13
18 18 C 1.38923 * 120.02531 * 179.97438 * 17 16 15
19 19 C 1.38086 * 119.97580 * 180.02562 * 18 17 16
20 20 C 1.38705 * 120.02742 * 0.02802 * 19 18 17
21 21 O 1.36005 * 119.97797 * 179.97438 * 20 19 18
22 22 C 1.42900 * 117.00006 * 179.97438 * 21 20 19
23 23 C 1.52993 * 109.47056 * 179.97438 * 22 21 20
24 24 C 1.38718 * 120.04909 * 0.22623 * 20 19 18
25 25 C 1.38085 * 120.02240 * 359.49417 * 24 20 19
26 26 H 4.40640 * 5.51361 * 179.97438 * 4 1 2
27 27 H 1.08997 * 109.46575 * 205.44985 * 3 2 1
28 28 H 1.08997 * 109.46967 * 85.44780 * 3 2 1
29 29 H 0.97001 * 119.99628 * 179.97438 * 8 7 5
30 30 H 1.08997 * 109.46797 * 60.00196 * 15 13 4
31 31 H 1.08998 * 109.47316 * 300.00163 * 15 13 4
32 32 H 1.08006 * 120.00734 * 359.97438 * 18 17 16
33 33 H 1.08008 * 119.98624 * 179.97438 * 19 18 17
34 34 H 1.09005 * 109.46948 * 299.99431 * 22 21 20
35 35 H 1.08996 * 109.47698 * 59.99066 * 22 21 20
36 36 H 1.09004 * 109.47774 * 59.99635 * 23 22 21
37 37 H 1.09004 * 109.47355 * 179.97438 * 23 22 21
38 38 H 1.08997 * 109.47551 * 299.99693 * 23 22 21
39 39 H 1.07995 * 119.98821 * 179.74942 * 24 20 19
40 40 H 1.08001 * 120.01566 * 180.25328 * 25 24 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1349 -1.1367 0.7834
5 6 3.4726 -0.9668 2.1012
6 1 4.0686 -1.7126 2.6063
7 6 3.0485 0.1648 2.7868
8 7 2.0202 0.8537 2.3452
9 14 3.9399 0.7069 4.3364
10 1 5.1108 1.5422 3.9672
11 1 3.0158 1.4985 5.1877
12 1 4.4014 -0.4890 5.0860
13 6 3.2525 -2.3500 0.2085
14 8 3.6568 -3.2918 0.8572
15 6 2.8807 -2.5368 -1.2399
16 16 3.1468 -4.2674 -1.7142
17 6 2.6674 -4.2920 -3.4094
18 6 2.7354 -5.4754 -4.1340
19 6 2.3599 -5.4934 -5.4627
20 6 1.9155 -4.3305 -6.0742
21 8 1.5464 -4.3492 -7.3831
22 6 1.0981 -3.1158 -7.9485
23 6 0.7300 -3.3322 -9.4176
24 6 1.8521 -3.1471 -5.3532
25 6 2.2216 -3.1280 -4.0228
26 1 -1.0498 -0.0002 0.0003
27 1 3.0089 0.9288 0.4416
28 1 3.0094 -0.0807 -1.0244
29 1 1.7239 1.6435 2.8241
30 1 3.5010 -1.8902 -1.8605
31 1 1.8312 -2.2789 -1.3819
32 1 3.0826 -6.3808 -3.6583
33 1 2.4131 -6.4133 -6.0262
34 1 0.2233 -2.7625 -7.4025
35 1 1.8936 -2.3738 -7.8790
36 1 -0.0655 -4.0742 -9.4875
37 1 0.3876 -2.3914 -9.8488
38 1 1.6050 -3.6852 -9.9633
39 1 1.5098 -2.2413 -5.8314
40 1 2.1684 -2.2075 -3.4605
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000490984497.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:14
Heat of formation + Delta-G solvation = 24.080118 kcal
Electronic energy + Delta-G solvation = -23135.255104 eV
Core-core repulsion = 19623.154779 eV
Total energy + Delta-G solvation = -3512.100324 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.14816 -38.71278 -37.53325 -35.30170 -32.38511 -32.22819 -31.37089 -31.13387
-29.83690 -29.08073 -26.50547 -24.60406 -24.17560 -22.64462 -21.80731 -19.52195
-18.46624 -18.02612 -17.22459 -16.71209 -16.34572 -16.31548 -15.92740 -14.87034
-14.74677 -14.61567 -14.48518 -13.99176 -13.66553 -13.57826 -13.41593 -13.26819
-12.91919 -12.61078 -12.40215 -12.31234 -11.98068 -11.93731 -11.81092 -11.55843
-11.08158 -11.05825 -10.92340 -10.56790 -10.38653 -9.84968 -9.46830 -9.40491
-9.14562 -9.03356 -8.96762 -8.63904 -8.00323 -6.95486 -6.43643 -3.96161
1.25757 1.27115 1.73474 2.76254 3.03021 3.09380 3.21078 3.25299
3.53147 3.63890 3.77393 3.92349 4.09904 4.59664 4.61435 4.73346
4.76037 4.82814 4.93449 4.93787 5.14559 5.23239 5.32815 5.36903
5.42876 5.45784 5.51080 5.56471 5.68648 5.74634 5.89368 5.99844
6.16285 6.23807 6.30437 6.59931 6.64923 6.91982 7.27700 7.47478
7.87973 8.29200 8.68824 8.99640 9.21144 9.73052 10.57091
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.021955 B = 0.002815 C = 0.002563
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1275.004704 B = 9945.187964 C =10920.526495
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.255 4.255
2 C -0.118 4.118
3 C 0.229 3.771
4 N -0.431 5.431
5 C -0.314 4.314
6 H 0.108 0.892
7 C 0.032 3.968
8 N -0.862 5.862
9 Si 0.926 3.074
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.269 1.269
13 C 0.463 3.537
14 O -0.565 6.565
15 C -0.132 4.132
16 S -0.037 6.037
17 C -0.129 4.129
18 C -0.064 4.064
19 C -0.133 4.133
20 C 0.113 3.887
21 O -0.318 6.318
22 C 0.054 3.946
23 C -0.151 4.151
24 C -0.186 4.186
25 C -0.097 4.097
26 H 0.200 0.800
27 H 0.116 0.884
28 H 0.060 0.940
29 H 0.270 0.730
30 H 0.099 0.901
31 H 0.103 0.897
32 H 0.135 0.865
33 H 0.133 0.867
34 H 0.061 0.939
35 H 0.061 0.939
36 H 0.065 0.935
37 H 0.077 0.923
38 H 0.065 0.935
39 H 0.128 0.872
40 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.386 -2.954 -19.087 19.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.274 4.274
2 C -0.120 4.120
3 C 0.106 3.894
4 N -0.150 5.150
5 C -0.441 4.441
6 H 0.125 0.875
7 C -0.173 4.173
8 N -0.500 5.500
9 Si 0.752 3.248
10 H -0.202 1.202
11 H -0.210 1.210
12 H -0.193 1.193
13 C 0.250 3.750
14 O -0.449 6.449
15 C -0.284 4.284
16 S 0.207 5.793
17 C -0.242 4.242
18 C -0.088 4.088
19 C -0.153 4.153
20 C 0.066 3.934
21 O -0.233 6.233
22 C -0.022 4.022
23 C -0.209 4.209
24 C -0.207 4.207
25 C -0.122 4.122
26 H 0.217 0.783
27 H 0.134 0.866
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.118 0.882
31 H 0.121 0.879
32 H 0.152 0.848
33 H 0.150 0.850
34 H 0.080 0.920
35 H 0.079 0.921
36 H 0.084 0.916
37 H 0.096 0.904
38 H 0.084 0.916
39 H 0.145 0.855
40 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -1.827 -4.229 -17.979 18.560
hybrid contribution -0.698 1.993 0.018 2.112
sum -2.525 -2.236 -17.961 18.275
Atomic orbital electron populations
1.24316 0.95412 1.02538 1.05140 1.23151 0.94327 0.98323 0.96192
1.18344 0.84347 0.93317 0.93414 1.43624 1.55537 1.05212 1.10598
1.19718 1.31254 1.07172 0.85994 0.87467 1.25323 0.95160 0.97339
0.99461 1.70084 1.20743 1.18324 1.40808 0.85944 0.79060 0.78952
0.80830 1.20158 1.21043 1.19338 1.19048 0.85569 0.83651 0.86771
1.90575 1.50775 1.39220 1.64282 1.23847 1.05817 0.97596 1.01122
1.86092 1.81004 1.11640 1.00548 1.22182 1.05303 0.96625 1.00102
1.20548 0.98850 0.96773 0.92651 1.20308 1.03605 0.96831 0.94549
1.18912 0.97009 0.94303 0.83202 1.86066 1.79995 1.34709 1.22516
1.22760 0.99029 0.85485 0.94899 1.21769 1.02661 1.02942 0.93481
1.21115 1.06764 0.97369 0.95410 1.21056 0.99079 0.97372 0.94648
0.78270 0.86624 0.92212 0.91954 0.88249 0.87918 0.84762 0.84958
0.92047 0.92070 0.91560 0.90427 0.91563 0.85454 0.85532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.09 19.25 29.55 0.57 -4.52 16
2 C -0.12 -2.54 10.95 -37.12 -0.41 -2.95 16
3 C 0.23 4.85 4.91 -6.83 -0.03 4.81 16
4 N -0.43 -10.57 2.60 -117.94 -0.31 -10.87 16
5 C -0.31 -8.41 9.35 -14.94 -0.14 -8.55 16
6 H 0.11 3.03 7.36 -52.48 -0.39 2.65 16
7 C 0.03 0.80 4.90 -17.47 -0.09 0.72 16
8 N -0.86 -21.89 9.39 55.50 0.52 -21.37 16
9 Si 0.93 20.00 29.60 -169.99 -5.03 14.97 16
10 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16
11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
12 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16
13 C 0.46 11.04 7.59 -10.98 -0.08 10.95 16
14 O -0.56 -15.43 15.50 5.54 0.09 -15.34 16
15 C -0.13 -2.44 3.42 36.01 0.12 -2.32 16
16 S -0.04 -0.66 21.06 -107.50 -2.26 -2.92 16
17 C -0.13 -1.92 6.11 -39.07 -0.24 -2.16 16
18 C -0.06 -0.84 9.79 -39.38 -0.39 -1.22 16
19 C -0.13 -1.60 9.98 -39.46 -0.39 -1.99 16
20 C 0.11 1.39 6.69 -39.23 -0.26 1.13 16
21 O -0.32 -3.58 10.14 -19.76 -0.20 -3.78 16
22 C 0.05 0.43 5.46 37.15 0.20 0.63 16
23 C -0.15 -0.91 10.28 37.15 0.38 -0.53 16
24 C -0.19 -2.25 9.03 -39.46 -0.36 -2.61 16
25 C -0.10 -1.33 9.36 -39.38 -0.37 -1.70 16
26 H 0.20 3.24 7.80 -54.10 -0.42 2.81 16
27 H 0.12 2.58 6.34 -51.93 -0.33 2.25 16
28 H 0.06 1.03 6.67 -51.93 -0.35 0.68 16
29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16
30 H 0.10 1.58 7.02 -51.93 -0.36 1.22 16
31 H 0.10 1.82 7.13 -51.92 -0.37 1.45 16
32 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16
33 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16
34 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16
35 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16
36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16
38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16
39 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16
40 H 0.13 1.65 5.87 -52.49 -0.31 1.34 16
LS Contribution 355.31 15.07 5.35 5.35
Total: -1.00 -31.14 355.31 -8.22 -39.36
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: -4.90 Total: 4.91 kcal
Atomic # 6 Polarization: -8.83 SS G_CDS: -1.48 Total: -10.30 kcal
Atomic # 7 Polarization: -32.46 SS G_CDS: 0.21 Total: -32.24 kcal
Atomic # 8 Polarization: -19.01 SS G_CDS: -0.11 Total: -19.12 kcal
Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal
Atomic # 16 Polarization: -0.66 SS G_CDS: -2.26 Total: -2.92 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -31.14 -8.22 -39.36 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490984497.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.438 kcal
(2) G-P(sol) polarization free energy of solvation -31.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds