Wall clock time and date at job start Tue Mar 31 2020 12:11:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47208 * 179.97438 * 2 1
4 4 N 1.46496 * 109.46996 * 325.44599 * 3 2 1
5 5 C 1.37094 * 120.00279 * 264.39343 * 4 3 2
6 6 H 1.08005 * 119.99579 * 196.18068 * 5 4 3
7 7 C 1.38945 * 120.00232 * 16.17176 * 5 4 3
8 8 N 1.31421 * 119.99718 * 20.86098 * 7 5 4
9 9 Si 1.86803 * 120.00419 * 200.85292 * 7 5 4
10 10 H 1.48498 * 109.46544 * 84.94838 * 9 7 5
11 11 H 1.48494 * 109.47029 * 204.94638 * 9 7 5
12 12 H 1.48491 * 109.47117 * 324.94789 * 9 7 5
13 13 C 1.34777 * 119.99495 * 84.39511 * 4 3 2
14 14 O 1.21295 * 119.99741 * 180.02562 * 13 4 3
15 15 C 1.50700 * 120.00386 * 359.97438 * 13 4 3
16 16 S 1.81402 * 109.47329 * 180.02562 * 15 13 4
17 17 C 1.76193 * 102.99978 * 180.02562 * 16 15 13
18 18 C 1.38923 * 120.02531 * 179.97438 * 17 16 15
19 19 C 1.38086 * 119.97580 * 180.02562 * 18 17 16
20 20 C 1.38705 * 120.02742 * 0.02802 * 19 18 17
21 21 O 1.36005 * 119.97797 * 179.97438 * 20 19 18
22 22 C 1.42900 * 117.00006 * 179.97438 * 21 20 19
23 23 C 1.52993 * 109.47056 * 179.97438 * 22 21 20
24 24 C 1.38718 * 120.04909 * 0.22623 * 20 19 18
25 25 C 1.38085 * 120.02240 * 359.49417 * 24 20 19
26 26 H 4.40640 * 5.51361 * 179.97438 * 4 1 2
27 27 H 1.08997 * 109.46575 * 205.44985 * 3 2 1
28 28 H 1.08997 * 109.46967 * 85.44780 * 3 2 1
29 29 H 0.97001 * 119.99628 * 179.97438 * 8 7 5
30 30 H 1.08997 * 109.46797 * 60.00196 * 15 13 4
31 31 H 1.08998 * 109.47316 * 300.00163 * 15 13 4
32 32 H 1.08006 * 120.00734 * 359.97438 * 18 17 16
33 33 H 1.08008 * 119.98624 * 179.97438 * 19 18 17
34 34 H 1.09005 * 109.46948 * 299.99431 * 22 21 20
35 35 H 1.08996 * 109.47698 * 59.99066 * 22 21 20
36 36 H 1.09004 * 109.47774 * 59.99635 * 23 22 21
37 37 H 1.09004 * 109.47355 * 179.97438 * 23 22 21
38 38 H 1.08997 * 109.47551 * 299.99693 * 23 22 21
39 39 H 1.07995 * 119.98821 * 179.74942 * 24 20 19
40 40 H 1.08001 * 120.01566 * 180.25328 * 25 24 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1349 -1.1367 0.7834
5 6 3.4726 -0.9668 2.1012
6 1 4.0686 -1.7126 2.6063
7 6 3.0485 0.1648 2.7868
8 7 2.0202 0.8537 2.3452
9 14 3.9399 0.7069 4.3364
10 1 5.1108 1.5422 3.9672
11 1 3.0158 1.4985 5.1877
12 1 4.4014 -0.4890 5.0860
13 6 3.2525 -2.3500 0.2085
14 8 3.6568 -3.2918 0.8572
15 6 2.8807 -2.5368 -1.2399
16 16 3.1468 -4.2674 -1.7142
17 6 2.6674 -4.2920 -3.4094
18 6 2.7354 -5.4754 -4.1340
19 6 2.3599 -5.4934 -5.4627
20 6 1.9155 -4.3305 -6.0742
21 8 1.5464 -4.3492 -7.3831
22 6 1.0981 -3.1158 -7.9485
23 6 0.7300 -3.3322 -9.4176
24 6 1.8521 -3.1471 -5.3532
25 6 2.2216 -3.1280 -4.0228
26 1 -1.0498 -0.0002 0.0003
27 1 3.0089 0.9288 0.4416
28 1 3.0094 -0.0807 -1.0244
29 1 1.7239 1.6435 2.8241
30 1 3.5010 -1.8902 -1.8605
31 1 1.8312 -2.2789 -1.3819
32 1 3.0826 -6.3808 -3.6583
33 1 2.4131 -6.4133 -6.0262
34 1 0.2233 -2.7625 -7.4025
35 1 1.8936 -2.3738 -7.8790
36 1 -0.0655 -4.0742 -9.4875
37 1 0.3876 -2.3914 -9.8488
38 1 1.6050 -3.6852 -9.9633
39 1 1.5098 -2.2413 -5.8314
40 1 2.1684 -2.2075 -3.4605
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000490984497.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:13
Heat of formation + Delta-G solvation = 7.726824 kcal
Electronic energy + Delta-G solvation = -23135.964236 eV
Core-core repulsion = 19623.154779 eV
Total energy + Delta-G solvation = -3512.809456 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.03875 -40.54784 -38.43846 -37.17057 -34.16472 -33.11352 -32.97456 -32.11772
-31.07791 -30.31074 -28.22143 -26.37616 -25.01231 -23.62138 -22.67320 -21.22755
-19.77484 -19.39320 -18.57537 -18.28545 -18.03821 -17.01886 -16.90020 -16.53669
-16.45090 -16.07163 -15.55977 -15.44908 -14.87321 -14.63413 -14.47027 -14.37187
-14.20179 -13.98859 -13.70983 -13.56795 -13.41640 -13.10855 -12.96172 -12.75078
-12.63170 -12.48360 -12.16068 -11.79082 -11.75413 -11.24320 -11.21926 -11.06067
-10.72413 -10.49096 -10.14374 -10.00571 -9.90398 -8.36726 -8.20912 -5.97194
0.25744 0.29029 0.39464 1.34821 1.43173 1.48198 1.53516 1.78626
2.07723 2.26302 2.29270 2.34806 2.65573 2.98970 3.05346 3.73746
3.79315 3.86511 3.89647 3.99214 4.08384 4.15058 4.19745 4.26813
4.38327 4.40782 4.56186 4.61635 4.82743 4.94175 4.94827 4.97045
5.07384 5.20306 5.30497 5.32318 5.38521 5.44499 5.65316 5.96032
6.36294 6.42890 7.06510 7.09468 7.31462 7.85649 8.61616
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.021955 B = 0.002815 C = 0.002563
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1275.004704 B = 9945.187964 C =10920.526495
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C -0.157 4.157
3 C 0.230 3.770
4 N -0.441 5.441
5 C -0.351 4.351
6 H 0.077 0.923
7 C 0.006 3.994
8 N -0.869 5.869
9 Si 0.986 3.014
10 H -0.263 1.263
11 H -0.277 1.277
12 H -0.279 1.279
13 C 0.451 3.549
14 O -0.612 6.612
15 C -0.112 4.112
16 S -0.084 6.084
17 C -0.141 4.141
18 C -0.067 4.067
19 C -0.135 4.135
20 C 0.115 3.885
21 O -0.327 6.327
22 C 0.043 3.957
23 C -0.149 4.149
24 C -0.186 4.186
25 C -0.103 4.103
26 H 0.233 0.767
27 H 0.100 0.900
28 H 0.098 0.902
29 H 0.274 0.726
30 H 0.126 0.874
31 H 0.111 0.889
32 H 0.143 0.857
33 H 0.153 0.847
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.063 0.937
37 H 0.098 0.902
38 H 0.064 0.936
39 H 0.152 0.848
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.432 -1.801 -21.222 21.573
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.259 4.259
2 C -0.159 4.159
3 C 0.108 3.892
4 N -0.159 5.159
5 C -0.479 4.479
6 H 0.095 0.905
7 C -0.198 4.198
8 N -0.506 5.506
9 Si 0.810 3.190
10 H -0.188 1.188
11 H -0.202 1.202
12 H -0.204 1.204
13 C 0.240 3.760
14 O -0.499 6.499
15 C -0.263 4.263
16 S 0.159 5.841
17 C -0.254 4.254
18 C -0.090 4.090
19 C -0.156 4.156
20 C 0.067 3.933
21 O -0.242 6.242
22 C -0.032 4.032
23 C -0.206 4.206
24 C -0.206 4.206
25 C -0.127 4.127
26 H 0.249 0.751
27 H 0.118 0.882
28 H 0.116 0.884
29 H 0.084 0.916
30 H 0.144 0.856
31 H 0.130 0.870
32 H 0.161 0.839
33 H 0.171 0.829
34 H 0.087 0.913
35 H 0.089 0.911
36 H 0.082 0.918
37 H 0.117 0.883
38 H 0.083 0.917
39 H 0.170 0.830
40 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -2.898 -3.040 -20.165 20.598
hybrid contribution -0.468 1.621 0.534 1.770
sum -3.366 -1.419 -19.631 19.968
Atomic orbital electron populations
1.25165 0.96373 1.00824 1.03568 1.23403 0.94930 0.99876 0.97669
1.18425 0.84685 0.91395 0.94716 1.43809 1.55393 1.06435 1.10275
1.19587 1.32841 1.07791 0.87637 0.90493 1.25971 0.95371 0.96594
1.01892 1.70169 1.20713 1.18143 1.41531 0.85057 0.78380 0.78107
0.77439 1.18834 1.20167 1.20445 1.19844 0.84484 0.82893 0.88792
1.90533 1.52606 1.40665 1.66054 1.23571 1.06565 0.98557 0.97588
1.86195 1.82300 1.11596 1.04020 1.22038 1.07443 0.97991 0.97936
1.20718 0.98552 0.96639 0.93098 1.20540 1.03027 0.97856 0.94132
1.19099 0.96011 0.94360 0.83798 1.86078 1.79751 1.36596 1.21772
1.23078 0.99616 0.84594 0.95912 1.21799 1.02535 1.04041 0.92188
1.21339 1.06178 0.98394 0.94722 1.21190 0.99007 0.97108 0.95399
0.75071 0.88208 0.88393 0.91592 0.85604 0.87041 0.83884 0.82949
0.91265 0.91135 0.91798 0.88333 0.91723 0.83046 0.85054
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.24 -9.13 19.25 74.32 1.43 -7.70 16
2 C -0.16 -6.60 10.95 31.13 0.34 -6.25 16
3 C 0.23 9.65 4.91 84.58 0.42 10.07 16
4 N -0.44 -22.07 2.60 -645.42 -1.68 -23.75 16
5 C -0.35 -19.42 9.35 84.04 0.79 -18.64 16
6 H 0.08 4.62 7.36 -2.91 -0.02 4.60 16
7 C 0.01 0.29 4.90 84.92 0.42 0.71 16
8 N -0.87 -43.84 9.39 21.66 0.20 -43.63 16
9 Si 0.99 41.24 29.60 68.60 2.03 43.27 16
10 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16
11 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16
12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16
13 C 0.45 22.09 7.59 87.66 0.67 22.76 16
14 O -0.61 -35.00 15.50 -3.07 -0.05 -35.05 16
15 C -0.11 -4.11 3.42 71.24 0.24 -3.87 16
16 S -0.08 -3.03 21.06 -56.49 -1.19 -4.22 16
17 C -0.14 -4.08 6.11 22.60 0.14 -3.95 16
18 C -0.07 -1.67 9.79 22.40 0.22 -1.45 16
19 C -0.14 -3.00 9.98 22.35 0.22 -2.77 16
20 C 0.12 2.55 6.69 22.50 0.15 2.70 16
21 O -0.33 -6.52 10.14 -93.61 -0.95 -7.47 16
22 C 0.04 0.56 5.46 71.98 0.39 0.96 16
23 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16
24 C -0.19 -4.03 9.03 22.35 0.20 -3.83 16
25 C -0.10 -2.64 9.36 22.40 0.21 -2.43 16
26 H 0.23 6.79 7.80 -4.43 -0.03 6.76 16
27 H 0.10 4.46 6.34 -2.39 -0.02 4.45 16
28 H 0.10 3.24 6.67 -2.39 -0.02 3.22 16
29 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16
30 H 0.13 3.86 7.02 -2.39 -0.02 3.84 16
31 H 0.11 3.87 7.13 -2.39 -0.02 3.86 16
32 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16
33 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16
34 H 0.07 0.82 7.67 -2.38 -0.02 0.80 16
35 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16
36 H 0.06 0.63 8.14 -2.38 -0.02 0.62 16
37 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16
38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
39 H 0.15 2.46 6.29 -2.91 -0.02 2.44 16
40 H 0.13 3.15 5.87 -2.91 -0.02 3.14 16
Total: -1.00 -68.95 355.31 5.99 -62.95
By element:
Atomic # 1 Polarization: 21.19 SS G_CDS: 1.05 Total: 22.24 kcal
Atomic # 6 Polarization: -20.91 SS G_CDS: 6.57 Total: -14.34 kcal
Atomic # 7 Polarization: -65.91 SS G_CDS: -1.48 Total: -67.38 kcal
Atomic # 8 Polarization: -41.53 SS G_CDS: -1.00 Total: -42.52 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal
Atomic # 16 Polarization: -3.03 SS G_CDS: -1.19 Total: -4.22 kcal
Total: -68.95 5.99 -62.95 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000490984497.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.680 kcal
(2) G-P(sol) polarization free energy of solvation -68.948 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.733 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.953 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds