Wall clock time and date at job start Tue Mar 31 2020 13:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86795 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47097 * 299.99631 * 3 2 1 6 6 H 1.48498 * 109.47315 * 59.99570 * 3 2 1 7 7 C 1.39128 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 229.55780 * 7 2 1 9 9 N 1.36713 * 119.99781 * 49.55600 * 7 2 1 10 10 C 1.34781 * 119.99730 * 176.50552 * 9 7 2 11 11 O 1.21756 * 119.99841 * 8.63561 * 10 9 7 12 12 C 1.46231 * 119.99603 * 188.64296 * 10 9 7 13 13 C 1.34983 * 119.99641 * 186.41286 * 12 10 9 14 14 C 1.47147 * 119.99926 * 179.97438 * 13 12 10 15 15 C 1.39891 * 120.16689 * 179.97438 * 14 13 12 16 16 C 1.37862 * 119.85248 * 179.97438 * 15 14 13 17 17 C 1.38414 * 120.18452 * 359.97438 * 16 15 14 18 18 C 1.38504 * 120.34203 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.92737 * 180.02562 * 18 17 16 20 20 C 1.38019 * 120.14465 * 359.78350 * 18 17 16 21 21 C 1.46502 * 120.00230 * 356.50280 * 9 7 2 22 22 C 1.55238 * 110.58075 * 235.68982 * 21 9 7 23 23 C 1.54886 * 102.58824 * 203.33612 * 22 21 9 24 24 C 1.54274 * 104.31138 * 37.93478 * 23 22 21 25 25 C 1.53873 * 106.59453 * 336.32243 * 24 23 22 26 26 H 0.97006 * 119.99938 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00374 * 6.40345 * 12 10 9 28 28 H 1.08003 * 119.99831 * 359.97438 * 13 12 10 29 29 H 1.08004 * 120.07885 * 359.96060 * 15 14 13 30 30 H 1.08001 * 119.90957 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.82646 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.09720 * 180.25771 * 20 18 17 33 33 H 1.08999 * 110.43182 * 358.27372 * 21 9 7 34 34 H 1.09004 * 110.89901 * 85.04523 * 22 21 9 35 35 H 1.09006 * 110.76717 * 321.57225 * 22 21 9 36 36 H 1.08995 * 110.48943 * 279.19191 * 23 22 21 37 37 H 1.09001 * 110.48383 * 156.67623 * 23 22 21 38 38 H 1.08991 * 110.02987 * 95.60598 * 24 23 22 39 39 H 1.08996 * 110.02690 * 216.98992 * 24 23 22 40 40 H 1.08998 * 110.03255 * 119.28667 * 25 24 23 41 41 H 1.09000 * 110.02988 * 240.66505 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.7073 1.3463 -0.0006 5 1 1.8886 2.3963 -1.2126 6 1 1.8885 2.3964 1.2124 7 6 2.0088 -1.2049 0.0005 8 1 2.8042 -1.3689 0.7124 9 7 1.6854 -2.1813 -0.9001 10 6 2.4046 -3.3202 -0.9466 11 8 3.2381 -3.5493 -0.0891 12 6 2.1839 -4.2807 -2.0269 13 6 2.8083 -5.4772 -2.0042 14 6 2.5858 -6.4439 -3.0910 15 6 3.2316 -7.6847 -3.0713 16 6 3.0180 -8.5857 -4.0926 17 6 2.1667 -8.2660 -5.1361 18 6 1.5233 -7.0398 -5.1635 19 17 0.4573 -6.6502 -6.4771 20 6 1.7239 -6.1288 -4.1462 21 6 0.5570 -1.9896 -1.8146 22 6 -0.4602 -3.1543 -1.6778 23 6 -1.1896 -3.1276 -3.0439 24 6 -0.0799 -2.7935 -4.0623 25 6 1.0306 -2.0700 -3.2806 26 1 -0.4850 0.8401 -0.0004 27 1 1.5212 -4.0328 -2.8429 28 1 3.4712 -5.7249 -1.1884 29 1 3.8961 -7.9362 -2.2579 30 1 3.5158 -9.5441 -4.0781 31 1 2.0032 -8.9764 -5.9330 32 1 1.2186 -5.1746 -4.1663 33 1 0.0699 -1.0336 -1.6229 34 1 -1.1593 -2.9662 -0.8629 35 1 0.0561 -4.1035 -1.5339 36 1 -1.9587 -2.3554 -3.0508 37 1 -1.6267 -4.1021 -3.2620 38 1 0.3106 -3.7106 -4.5032 39 1 -0.4733 -2.1423 -4.8428 40 1 1.9601 -2.6359 -3.3422 41 1 1.1770 -1.0672 -3.6819 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491850688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:36 Heat of formation + Delta-G solvation = 17.707460 kcal Electronic energy + Delta-G solvation = -24796.577846 eV Core-core repulsion = 21282.157476 eV Total energy + Delta-G solvation = -3514.420370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.75433 -39.01336 -36.66935 -36.49906 -34.57583 -33.28466 -31.85585 -30.78624 -29.43233 -28.26282 -27.18882 -25.40212 -23.65932 -22.56362 -21.25808 -20.08872 -19.74011 -18.34180 -17.77375 -16.76450 -16.01812 -15.61537 -15.32958 -14.78685 -14.68226 -14.25065 -14.02269 -13.74013 -13.63262 -13.42998 -13.17279 -12.87991 -12.72828 -12.19352 -11.94440 -11.70070 -11.66379 -11.42353 -11.32470 -10.97631 -10.86998 -10.85461 -10.82671 -10.63016 -10.43429 -10.21751 -10.15401 -9.84566 -9.80620 -8.85065 -8.77854 -8.42107 -8.00676 -7.91276 -6.86546 -3.72864 0.75025 1.19651 2.07495 2.33481 3.01935 3.18404 3.28824 3.74021 3.95860 4.19574 4.64288 4.72417 4.77397 4.85390 4.99373 5.13488 5.19773 5.24218 5.30554 5.40731 5.51741 5.68950 5.78562 5.86825 5.96858 6.04125 6.07582 6.15208 6.17365 6.22438 6.26785 6.31109 6.40818 6.43642 6.49681 6.68565 6.76359 6.86308 6.94841 7.02196 7.11384 7.33078 8.01503 8.32313 9.03935 9.28082 9.97545 10.17082 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.004046 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.280584 B = 6919.015686 C = 7938.419600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.058 3.942 3 Si 0.885 3.115 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.328 4.328 8 H 0.116 0.884 9 N -0.406 5.406 10 C 0.441 3.559 11 O -0.602 6.602 12 C -0.150 4.150 13 C -0.119 4.119 14 C -0.019 4.019 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.127 4.127 18 C -0.028 4.028 19 Cl -0.077 7.077 20 C -0.119 4.119 21 C 0.113 3.887 22 C -0.136 4.136 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.156 4.156 26 H 0.276 0.724 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 -10.331 -11.685 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.153 4.153 3 Si 0.709 3.291 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.453 4.453 8 H 0.134 0.866 9 N -0.119 5.119 10 C 0.235 3.765 11 O -0.491 6.491 12 C -0.171 4.171 13 C -0.140 4.140 14 C -0.020 4.020 15 C -0.130 4.130 16 C -0.123 4.123 17 C -0.146 4.146 18 C -0.054 4.054 19 Cl -0.048 7.048 20 C -0.138 4.138 21 C 0.008 3.992 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.162 4.162 25 C -0.194 4.194 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.606 -10.203 -11.347 15.344 hybrid contribution 0.022 0.912 -0.249 0.946 sum -1.584 -9.291 -11.596 14.943 Atomic orbital electron populations 1.70270 1.07262 1.29040 1.37127 1.25230 0.94333 1.00199 0.95517 0.86559 0.82303 0.81967 0.78266 1.18486 1.20053 1.20552 1.19691 1.18003 0.91115 1.16540 0.86645 1.43798 1.24525 1.14250 1.29316 1.17571 0.87532 0.82906 0.88455 1.90628 1.39670 1.76660 1.42143 1.24013 0.99044 0.94780 0.99233 1.21966 1.01567 0.93159 0.97306 1.19096 0.94973 0.94165 0.93760 1.21448 0.99646 0.92982 0.98944 1.20993 0.97988 0.99636 0.93696 1.21026 0.98268 0.95398 0.99878 1.20789 0.97039 0.96165 0.91409 1.98362 1.64480 1.94261 1.47723 1.21455 0.99431 0.99831 0.93085 1.22701 0.87189 1.02576 0.86705 1.23155 0.98751 0.98574 0.96886 1.22292 0.97575 1.00987 0.95165 1.22176 0.96323 0.99721 0.98023 1.23028 0.98864 1.00825 0.96697 0.91382 0.84634 0.85050 0.85101 0.85220 0.85354 0.84512 0.84409 0.90958 0.91424 0.91511 0.92048 0.92278 0.91827 0.90618 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.58 11.29 55.51 0.63 -18.96 16 2 C 0.06 1.42 4.59 -17.44 -0.08 1.34 16 3 Si 0.89 18.95 29.69 -169.99 -5.05 13.90 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 7 C -0.33 -8.82 9.31 -15.04 -0.14 -8.96 16 8 H 0.12 3.35 7.40 -52.49 -0.39 2.96 16 9 N -0.41 -10.07 2.66 -107.41 -0.29 -10.36 16 10 C 0.44 10.94 6.87 -13.05 -0.09 10.85 16 11 O -0.60 -17.07 15.85 5.14 0.08 -16.99 16 12 C -0.15 -2.96 5.57 -37.53 -0.21 -3.17 16 13 C -0.12 -2.11 9.46 -37.12 -0.35 -2.46 16 14 C -0.02 -0.29 5.87 -105.06 -0.62 -0.90 16 15 C -0.11 -1.38 9.80 -39.10 -0.38 -1.76 16 16 C -0.10 -1.10 10.03 -39.65 -0.40 -1.50 16 17 C -0.13 -1.39 9.82 -39.42 -0.39 -1.77 16 18 C -0.03 -0.35 6.31 -39.56 -0.25 -0.60 16 19 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.40 16 20 C -0.12 -1.69 9.19 -39.06 -0.36 -2.05 16 21 C 0.11 2.39 2.88 -66.08 -0.19 2.20 16 22 C -0.14 -2.53 5.97 -24.55 -0.15 -2.68 16 23 C -0.12 -1.82 6.82 -25.07 -0.17 -1.99 16 24 C -0.12 -1.80 6.17 -25.61 -0.16 -1.96 16 25 C -0.16 -2.76 5.63 -25.62 -0.14 -2.91 16 26 H 0.28 6.17 8.31 -40.82 -0.34 5.83 16 27 H 0.14 2.39 1.36 -52.49 -0.07 2.32 16 28 H 0.13 2.44 7.53 -52.48 -0.40 2.05 16 29 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.14 1.95 3.93 -52.49 -0.21 1.74 16 33 H 0.14 3.16 4.77 -51.93 -0.25 2.91 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.29 5.39 -51.93 -0.28 1.01 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.79 5.51 -51.93 -0.29 0.50 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 1.38 5.07 -51.93 -0.26 1.12 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.19 15.07 5.10 5.10 Total: -1.00 -28.82 338.19 -9.76 -38.57 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.65 Total: 9.43 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.07 Total: -18.31 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.34 Total: -29.32 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.08 Total: -16.99 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.05 Total: 13.90 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.40 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.82 -9.76 -38.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491850688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.280 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds