Wall clock time and date at job start Tue Mar 31 2020 13:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31320 * 1 3 3 Si 1.86795 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47375 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47097 * 299.99631 * 3 2 1 6 6 H 1.48498 * 109.47315 * 59.99570 * 3 2 1 7 7 C 1.39128 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 229.55780 * 7 2 1 9 9 N 1.36713 * 119.99781 * 49.55600 * 7 2 1 10 10 C 1.34781 * 119.99730 * 176.50552 * 9 7 2 11 11 O 1.21756 * 119.99841 * 8.63561 * 10 9 7 12 12 C 1.46231 * 119.99603 * 188.64296 * 10 9 7 13 13 C 1.34983 * 119.99641 * 186.41286 * 12 10 9 14 14 C 1.47147 * 119.99926 * 179.97438 * 13 12 10 15 15 C 1.39891 * 120.16689 * 179.97438 * 14 13 12 16 16 C 1.37862 * 119.85248 * 179.97438 * 15 14 13 17 17 C 1.38414 * 120.18452 * 359.97438 * 16 15 14 18 18 C 1.38504 * 120.34203 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 119.92737 * 180.02562 * 18 17 16 20 20 C 1.38019 * 120.14465 * 359.78350 * 18 17 16 21 21 C 1.46502 * 120.00230 * 356.50280 * 9 7 2 22 22 C 1.55238 * 110.58075 * 235.68982 * 21 9 7 23 23 C 1.54886 * 102.58824 * 203.33612 * 22 21 9 24 24 C 1.54274 * 104.31138 * 37.93478 * 23 22 21 25 25 C 1.53873 * 106.59453 * 336.32243 * 24 23 22 26 26 H 0.97006 * 119.99938 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00374 * 6.40345 * 12 10 9 28 28 H 1.08003 * 119.99831 * 359.97438 * 13 12 10 29 29 H 1.08004 * 120.07885 * 359.96060 * 15 14 13 30 30 H 1.08001 * 119.90957 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.82646 * 180.02562 * 17 16 15 32 32 H 1.07999 * 120.09720 * 180.25771 * 20 18 17 33 33 H 1.08999 * 110.43182 * 358.27372 * 21 9 7 34 34 H 1.09004 * 110.89901 * 85.04523 * 22 21 9 35 35 H 1.09006 * 110.76717 * 321.57225 * 22 21 9 36 36 H 1.08995 * 110.48943 * 279.19191 * 23 22 21 37 37 H 1.09001 * 110.48383 * 156.67623 * 23 22 21 38 38 H 1.08991 * 110.02987 * 95.60598 * 24 23 22 39 39 H 1.08996 * 110.02690 * 216.98992 * 24 23 22 40 40 H 1.08998 * 110.03255 * 119.28667 * 25 24 23 41 41 H 1.09000 * 110.02988 * 240.66505 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6176 0.0000 4 1 3.7073 1.3463 -0.0006 5 1 1.8886 2.3963 -1.2126 6 1 1.8885 2.3964 1.2124 7 6 2.0088 -1.2049 0.0005 8 1 2.8042 -1.3689 0.7124 9 7 1.6854 -2.1813 -0.9001 10 6 2.4046 -3.3202 -0.9466 11 8 3.2381 -3.5493 -0.0891 12 6 2.1839 -4.2807 -2.0269 13 6 2.8083 -5.4772 -2.0042 14 6 2.5858 -6.4439 -3.0910 15 6 3.2316 -7.6847 -3.0713 16 6 3.0180 -8.5857 -4.0926 17 6 2.1667 -8.2660 -5.1361 18 6 1.5233 -7.0398 -5.1635 19 17 0.4573 -6.6502 -6.4771 20 6 1.7239 -6.1288 -4.1462 21 6 0.5570 -1.9896 -1.8146 22 6 -0.4602 -3.1543 -1.6778 23 6 -1.1896 -3.1276 -3.0439 24 6 -0.0799 -2.7935 -4.0623 25 6 1.0306 -2.0700 -3.2806 26 1 -0.4850 0.8401 -0.0004 27 1 1.5212 -4.0328 -2.8429 28 1 3.4712 -5.7249 -1.1884 29 1 3.8961 -7.9362 -2.2579 30 1 3.5158 -9.5441 -4.0781 31 1 2.0032 -8.9764 -5.9330 32 1 1.2186 -5.1746 -4.1663 33 1 0.0699 -1.0336 -1.6229 34 1 -1.1593 -2.9662 -0.8629 35 1 0.0561 -4.1035 -1.5339 36 1 -1.9587 -2.3554 -3.0508 37 1 -1.6267 -4.1021 -3.2620 38 1 0.3106 -3.7106 -4.5032 39 1 -0.4733 -2.1423 -4.8428 40 1 1.9601 -2.6359 -3.3422 41 1 1.1770 -1.0672 -3.6819 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491850688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:35 Heat of formation + Delta-G solvation = 3.568593 kcal Electronic energy + Delta-G solvation = -24797.190954 eV Core-core repulsion = 21282.157476 eV Total energy + Delta-G solvation = -3515.033477 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.31561 -40.13275 -38.33559 -37.45224 -36.26949 -34.67823 -33.71745 -31.75375 -30.71040 -29.64498 -28.70935 -27.10907 -25.04819 -23.60662 -22.63255 -21.46372 -21.16277 -19.92919 -19.36637 -18.09484 -17.47272 -17.08440 -16.47436 -16.39663 -16.00658 -15.85122 -15.41801 -15.34287 -14.71781 -14.60860 -14.51514 -14.41958 -14.12898 -13.88513 -13.43244 -13.20287 -12.70666 -12.64586 -12.54768 -12.51332 -12.30965 -12.16684 -12.12207 -11.98789 -11.90747 -11.81603 -11.51830 -11.29223 -11.02714 -10.58817 -10.39870 -9.85425 -9.80436 -9.18856 -8.74763 -5.74491 -0.42062 0.23888 1.00083 1.14589 1.29570 1.40102 1.54742 2.17226 2.30995 2.73623 2.99340 3.01972 3.61725 3.70159 3.83242 3.85096 3.96150 4.13882 4.18807 4.28565 4.33722 4.42644 4.51779 4.63038 4.65645 4.68986 4.77671 4.81414 4.93711 4.99045 5.08794 5.11927 5.18992 5.28133 5.31807 5.33560 5.38250 5.46954 5.50732 5.53818 5.65166 5.83696 6.06004 6.42472 7.12054 7.42154 8.09665 8.29936 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.004046 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.280584 B = 6919.015686 C = 7938.419600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.042 3.958 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.256 1.256 6 H -0.269 1.269 7 C -0.389 4.389 8 H 0.074 0.926 9 N -0.416 5.416 10 C 0.429 3.571 11 O -0.657 6.657 12 C -0.179 4.179 13 C -0.081 4.081 14 C -0.053 4.053 15 C -0.106 4.106 16 C -0.098 4.098 17 C -0.109 4.109 18 C -0.040 4.040 19 Cl -0.067 7.067 20 C -0.121 4.121 21 C 0.105 3.895 22 C -0.134 4.134 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.153 4.153 26 H 0.287 0.713 27 H 0.160 0.840 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 -12.286 -15.226 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.169 4.169 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.180 1.180 6 H -0.195 1.195 7 C -0.515 4.515 8 H 0.092 0.908 9 N -0.128 5.128 10 C 0.224 3.776 11 O -0.550 6.550 12 C -0.199 4.199 13 C -0.103 4.103 14 C -0.053 4.053 15 C -0.124 4.124 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.067 4.067 19 Cl -0.038 7.038 20 C -0.139 4.139 21 C 0.001 3.999 22 C -0.173 4.173 23 C -0.149 4.149 24 C -0.153 4.153 25 C -0.191 4.191 26 H 0.098 0.902 27 H 0.177 0.823 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.186 0.814 31 H 0.176 0.824 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.582 -12.149 -14.917 19.411 hybrid contribution 0.345 1.229 0.778 1.495 sum -2.237 -10.919 -14.139 18.004 Atomic orbital electron populations 1.70248 1.07964 1.30369 1.36316 1.25795 0.94868 1.01880 0.94337 0.85632 0.79799 0.78213 0.79193 1.20332 1.18012 1.19462 1.19384 1.19175 0.94013 1.18880 0.90849 1.43898 1.25529 1.13911 1.29509 1.18412 0.86625 0.83559 0.89030 1.90554 1.41862 1.78110 1.44523 1.23734 1.02334 0.94715 0.99161 1.22164 0.98261 0.92813 0.97034 1.18956 0.97772 0.94869 0.93743 1.21729 0.98757 0.92075 0.99863 1.21410 0.97304 1.00527 0.92320 1.21495 0.96261 0.94833 1.00164 1.20901 0.97726 0.96591 0.91435 1.98369 1.64168 1.94311 1.46988 1.21449 0.99073 1.00092 0.93314 1.22828 0.86638 1.02507 0.87967 1.23074 0.98017 0.97303 0.98861 1.22267 0.97511 1.02743 0.92377 1.22160 0.94764 1.00474 0.97889 1.22970 0.99826 1.01494 0.94826 0.90215 0.82323 0.86577 0.83763 0.81393 0.82419 0.85027 0.86328 0.93043 0.92123 0.90621 0.89615 0.90769 0.89246 0.91467 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.05 11.29 21.69 0.24 -40.80 16 2 C 0.04 2.17 4.59 84.98 0.39 2.56 16 3 Si 0.95 40.38 29.69 68.60 2.04 42.41 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.39 -22.70 9.31 84.15 0.78 -21.92 16 8 H 0.07 4.76 7.40 -2.91 -0.02 4.74 16 9 N -0.42 -22.20 2.66 -611.91 -1.63 -23.83 16 10 C 0.43 22.94 6.87 86.32 0.59 23.53 16 11 O -0.66 -40.68 15.85 -4.53 -0.07 -40.75 16 12 C -0.18 -7.39 5.57 23.60 0.13 -7.25 16 13 C -0.08 -2.97 9.46 23.86 0.23 -2.74 16 14 C -0.05 -1.49 5.87 -20.15 -0.12 -1.61 16 15 C -0.11 -2.30 9.80 22.58 0.22 -2.08 16 16 C -0.10 -1.57 10.03 22.22 0.22 -1.35 16 17 C -0.11 -1.85 9.82 22.38 0.22 -1.63 16 18 C -0.04 -0.86 6.31 22.28 0.14 -0.72 16 19 Cl -0.07 -1.32 28.95 -2.72 -0.08 -1.40 16 20 C -0.12 -3.13 9.19 22.61 0.21 -2.93 16 21 C 0.10 4.58 2.88 46.19 0.13 4.71 16 22 C -0.13 -5.14 5.97 32.01 0.19 -4.95 16 23 C -0.11 -3.09 6.82 31.67 0.22 -2.87 16 24 C -0.12 -3.05 6.17 31.32 0.19 -2.85 16 25 C -0.15 -5.42 5.63 31.32 0.18 -5.24 16 26 H 0.29 12.95 8.31 -92.70 -0.77 12.18 16 27 H 0.16 5.66 1.36 -2.91 0.00 5.66 16 28 H 0.12 4.54 7.53 -2.91 -0.02 4.52 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.13 3.48 3.93 -2.91 -0.01 3.47 16 33 H 0.12 5.64 4.77 -2.39 -0.01 5.63 16 34 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.06 2.40 5.39 -2.38 -0.01 2.38 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 1.76 5.51 -2.39 -0.01 1.74 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.50 5.07 -2.39 -0.01 2.49 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -69.70 338.19 5.50 -64.20 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 1.07 Total: 27.50 kcal Atomic # 6 Polarization: -31.25 SS G_CDS: 3.93 Total: -27.33 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -1.38 Total: -64.63 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.07 Total: -40.75 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.04 Total: 42.41 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -69.70 5.50 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491850688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.765 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds