Wall clock time and date at job start Tue Mar 31 2020 12:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39782 * 119.97863 * 130.63249 * 3 2 1 5 5 C 1.37103 * 120.01751 * 179.72284 * 4 3 2 6 6 C 1.39938 * 119.98378 * 0.27441 * 5 4 3 7 7 C 1.47153 * 120.01949 * 179.97438 * 6 5 4 8 8 C 1.34854 * 119.99841 * 132.23370 * 7 6 5 9 9 C 1.46468 * 119.99952 * 348.28798 * 8 7 6 10 10 O 1.21689 * 119.99944 * 353.62310 * 9 8 7 11 11 N 1.34768 * 119.99729 * 173.62314 * 9 8 7 12 12 C 1.39338 * 119.99767 * 175.51805 * 11 9 8 13 13 C 1.38645 * 119.58584 * 185.32735 * 12 11 9 14 14 C 1.40800 * 118.79475 * 179.73638 * 13 12 11 15 15 C 1.41539 * 120.99189 * 180.25904 * 14 13 12 16 16 H 1.08003 * 120.00321 * 330.19068 * 15 14 13 17 17 C 1.40036 * 119.99951 * 150.20617 * 15 14 13 18 18 N 1.30740 * 120.00017 * 0.99203 * 17 15 14 19 19 Si 1.86799 * 119.99881 * 181.00431 * 17 15 14 20 20 H 1.48499 * 109.47548 * 94.99314 * 19 17 15 21 21 H 1.48502 * 109.46654 * 214.99236 * 19 17 15 22 22 H 1.48501 * 109.47020 * 334.98517 * 19 17 15 23 23 C 1.41177 * 118.00575 * 0.51784 * 14 13 12 24 24 C 1.37582 * 119.02940 * 359.73895 * 23 14 13 25 25 N 1.32085 * 121.10945 * 0.02562 * 24 23 14 26 26 C 1.39939 * 119.95956 * 0.02562 * 6 5 4 27 27 C 1.37110 * 119.97887 * 359.97438 * 26 6 5 28 28 H 1.07999 * 119.98535 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.00621 * 180.29816 * 5 4 3 30 30 H 1.08003 * 120.00308 * 312.23255 * 7 6 5 31 31 H 1.07996 * 119.99719 * 168.29013 * 8 7 6 32 32 H 0.97002 * 120.00116 * 355.51133 * 11 9 8 33 33 H 1.08005 * 120.60041 * 359.97438 * 13 12 11 34 34 H 0.96998 * 120.00296 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.48795 * 179.75875 * 23 14 13 36 36 H 1.07993 * 119.44834 * 180.02562 * 24 23 14 37 37 H 1.08004 * 120.01152 * 179.97438 * 26 6 5 38 38 H 1.08002 * 119.99042 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 0.7894 -0.9189 5 6 4.6371 0.7950 -0.9159 6 6 5.3377 0.0064 0.0037 7 6 6.8092 0.0113 0.0072 8 6 7.4801 0.1561 1.1680 9 6 6.7663 0.5625 2.3807 10 8 5.5936 0.8816 2.3184 11 7 7.4082 0.5830 3.5655 12 6 6.7574 1.0581 4.7023 13 6 7.4588 1.1796 5.8921 14 6 6.7862 1.6666 7.0291 15 6 7.4584 1.8145 8.2659 16 1 8.2805 1.1600 8.5154 17 6 7.0574 2.8094 9.1662 18 7 6.0497 3.5889 8.8727 19 14 7.9626 3.0228 10.7862 20 1 9.0020 4.0729 10.6380 21 1 6.9991 3.4255 11.8421 22 1 8.6059 1.7395 11.1666 23 6 5.4199 1.9978 6.9000 24 6 4.8068 1.8382 5.6787 25 7 5.4747 1.3825 4.6342 26 6 4.6380 -0.7878 0.9191 27 6 3.2669 -0.7922 0.9147 28 1 2.7253 1.3984 -1.6282 29 1 5.1764 1.4083 -1.6228 30 1 7.3519 -0.1010 -0.9197 31 1 8.5438 -0.0275 1.2034 32 1 8.3233 0.2670 3.6269 33 1 8.5031 0.9092 5.9448 34 1 5.7722 4.2783 9.4961 35 1 4.8641 2.3712 7.7474 36 1 3.7621 2.0899 5.5722 37 1 5.1778 -1.3971 1.6289 38 1 2.7267 -1.4047 1.6214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492172655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:25 Heat of formation + Delta-G solvation = 87.675848 kcal Electronic energy + Delta-G solvation = -24373.199656 eV Core-core repulsion = 20760.705850 eV Total energy + Delta-G solvation = -3612.493807 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10908 -39.15759 -37.84119 -36.45396 -34.63302 -33.74707 -33.55528 -31.17568 -30.67704 -30.26701 -28.49269 -26.02581 -24.91215 -22.73880 -22.70141 -21.82963 -20.73099 -19.19878 -18.93691 -17.86072 -17.28104 -16.00135 -15.56438 -15.21639 -15.11042 -14.75016 -14.32955 -14.26811 -14.17336 -13.92718 -13.69614 -13.56849 -13.51321 -12.96339 -12.81630 -12.65450 -12.40082 -12.32155 -12.15566 -11.55383 -11.46906 -11.26623 -11.15766 -10.97975 -10.41665 -10.04358 -9.90096 -9.80692 -9.50370 -9.42302 -8.93740 -8.27244 -8.00585 -7.73901 -7.03902 -6.70395 -4.66935 0.42008 1.42325 1.49782 2.65774 2.67525 2.77497 3.01052 3.01200 3.05086 3.20247 3.57606 3.77001 3.85167 3.86313 3.97124 4.55519 4.69509 4.77298 4.84638 4.94988 5.22711 5.27534 5.49898 5.63854 5.69717 5.84450 5.86503 5.97854 6.10643 6.26439 6.32881 6.47426 6.55673 6.56802 6.76061 6.80829 6.89989 7.14716 7.37013 7.47061 7.50179 7.76957 7.91530 8.16266 8.45403 8.65757 8.74173 8.81935 9.64528 10.11811 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002850 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.444713 B = 9822.981041 C =10968.594976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.261 3.739 3 C -0.030 4.030 4 C -0.077 4.077 5 C -0.108 4.108 6 C -0.025 4.025 7 C -0.049 4.049 8 C -0.189 4.189 9 C 0.516 3.484 10 O -0.463 6.463 11 N -0.654 5.654 12 C 0.343 3.657 13 C -0.298 4.298 14 C 0.141 3.859 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.798 5.798 19 Si 0.918 3.082 20 H -0.270 1.270 21 H -0.275 1.275 22 H -0.261 1.261 23 C -0.217 4.217 24 C 0.099 3.901 25 N -0.545 5.545 26 C -0.049 4.049 27 C -0.070 4.070 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.406 0.594 33 H 0.101 0.899 34 H 0.281 0.719 35 H 0.139 0.861 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.552 -6.568 -14.894 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.053 4.053 3 C -0.034 4.034 4 C -0.098 4.098 5 C -0.126 4.126 6 C -0.026 4.026 7 C -0.068 4.068 8 C -0.210 4.210 9 C 0.302 3.698 10 O -0.334 6.334 11 N -0.300 5.300 12 C 0.115 3.885 13 C -0.323 4.323 14 C 0.133 3.867 15 C -0.488 4.488 16 H 0.097 0.903 17 C -0.145 4.145 18 N -0.425 5.425 19 Si 0.743 3.257 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.240 4.240 24 C -0.052 4.052 25 N -0.264 5.264 26 C -0.068 4.068 27 C -0.090 4.090 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.240 0.760 33 H 0.119 0.881 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.327 -6.226 -15.688 16.931 hybrid contribution 1.986 0.356 1.789 2.696 sum 3.313 -5.870 -13.899 15.447 Atomic orbital electron populations 1.81218 1.12197 1.08696 1.08510 1.25833 0.92799 0.93382 0.93328 1.16032 0.83993 1.02604 1.00740 1.20789 0.94218 0.97358 0.97409 1.20905 0.93474 0.99200 0.98995 1.19095 0.92857 0.95876 0.94742 1.22322 0.92477 0.94509 0.97488 1.23266 1.00814 1.03605 0.93334 1.18552 0.87508 0.80327 0.83411 1.90982 1.14270 1.43308 1.84826 1.43399 1.16664 1.62787 1.07135 1.17986 0.90100 0.95783 0.84619 1.21303 0.99265 1.19093 0.92668 1.17632 0.91035 0.86407 0.91633 1.19555 1.14894 1.14563 0.99769 0.90257 1.25955 0.94310 0.94635 0.99585 1.69711 1.22055 1.15032 1.35664 0.86132 0.79662 0.79600 0.80322 1.19484 1.20051 1.18511 1.22531 0.95771 1.07201 0.98524 1.21966 0.98027 0.96380 0.88864 1.67237 1.06447 1.20456 1.32247 1.20869 0.93369 0.97475 0.95039 1.20816 0.94248 0.97466 0.96484 0.85404 0.85222 0.84278 0.84884 0.75963 0.88076 0.90777 0.84393 0.85948 0.85781 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.67 18.54 41.84 0.78 -5.89 16 2 C 0.26 3.55 15.32 -22.47 -0.34 3.21 16 3 C -0.03 -0.37 5.74 -106.82 -0.61 -0.98 16 4 C -0.08 -0.81 9.71 -39.42 -0.38 -1.19 16 5 C -0.11 -1.07 9.75 -39.36 -0.38 -1.46 16 6 C -0.02 -0.28 4.34 -105.01 -0.46 -0.73 16 7 C -0.05 -0.43 9.77 -37.17 -0.36 -0.80 16 8 C -0.19 -1.95 9.92 -37.47 -0.37 -2.32 16 9 C 0.52 8.18 6.91 -12.95 -0.09 8.09 16 10 O -0.46 -8.97 10.74 5.20 0.06 -8.92 16 11 N -0.65 -10.98 5.38 -12.75 -0.07 -11.05 16 12 C 0.34 7.59 7.41 -154.80 -1.15 6.45 16 13 C -0.30 -6.87 9.73 -38.46 -0.37 -7.24 16 14 C 0.14 3.63 5.61 -106.56 -0.60 3.03 16 15 C -0.46 -11.53 9.13 -37.65 -0.34 -11.87 16 16 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 17 C 0.07 1.75 5.43 -17.34 -0.09 1.66 16 18 N -0.80 -19.94 10.49 55.55 0.58 -19.36 16 19 Si 0.92 17.98 29.56 -169.99 -5.02 12.95 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 21 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.22 -5.55 8.79 -38.71 -0.34 -5.89 16 24 C 0.10 2.41 11.15 -17.68 -0.20 2.22 16 25 N -0.54 -13.20 7.84 -12.54 -0.10 -13.30 16 26 C -0.05 -0.62 6.75 -39.35 -0.27 -0.89 16 27 C -0.07 -0.87 9.71 -39.42 -0.38 -1.25 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.41 5.14 8.68 -40.82 -0.35 4.79 16 33 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 34 H 0.28 6.40 8.29 -40.82 -0.34 6.07 16 35 H 0.14 3.62 6.00 -52.48 -0.31 3.31 16 36 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 37 H 0.12 1.58 7.44 -52.48 -0.39 1.19 16 38 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -31.98 343.70 -8.91 -40.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -3.57 Total: 9.48 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -6.75 Total: -9.98 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 1.19 Total: -49.60 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.06 Total: -8.92 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.02 Total: 12.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.98 -8.91 -40.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492172655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.563 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds