Wall clock time and date at job start Tue Mar 31 2020 12:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39782 * 119.97863 * 130.63249 * 3 2 1 5 5 C 1.37103 * 120.01751 * 179.72284 * 4 3 2 6 6 C 1.39938 * 119.98378 * 0.27441 * 5 4 3 7 7 C 1.47153 * 120.01949 * 179.97438 * 6 5 4 8 8 C 1.34854 * 119.99841 * 132.23370 * 7 6 5 9 9 C 1.46468 * 119.99952 * 348.28798 * 8 7 6 10 10 O 1.21689 * 119.99944 * 353.62310 * 9 8 7 11 11 N 1.34768 * 119.99729 * 173.62314 * 9 8 7 12 12 C 1.39338 * 119.99767 * 175.51805 * 11 9 8 13 13 C 1.38645 * 119.58584 * 185.32735 * 12 11 9 14 14 C 1.40800 * 118.79475 * 179.73638 * 13 12 11 15 15 C 1.41539 * 120.99189 * 180.25904 * 14 13 12 16 16 H 1.08003 * 120.00321 * 330.19068 * 15 14 13 17 17 C 1.40036 * 119.99951 * 150.20617 * 15 14 13 18 18 N 1.30740 * 120.00017 * 0.99203 * 17 15 14 19 19 Si 1.86799 * 119.99881 * 181.00431 * 17 15 14 20 20 H 1.48499 * 109.47548 * 94.99314 * 19 17 15 21 21 H 1.48502 * 109.46654 * 214.99236 * 19 17 15 22 22 H 1.48501 * 109.47020 * 334.98517 * 19 17 15 23 23 C 1.41177 * 118.00575 * 0.51784 * 14 13 12 24 24 C 1.37582 * 119.02940 * 359.73895 * 23 14 13 25 25 N 1.32085 * 121.10945 * 0.02562 * 24 23 14 26 26 C 1.39939 * 119.95956 * 0.02562 * 6 5 4 27 27 C 1.37110 * 119.97887 * 359.97438 * 26 6 5 28 28 H 1.07999 * 119.98535 * 0.02562 * 4 3 2 29 29 H 1.08008 * 120.00621 * 180.29816 * 5 4 3 30 30 H 1.08003 * 120.00308 * 312.23255 * 7 6 5 31 31 H 1.07996 * 119.99719 * 168.29013 * 8 7 6 32 32 H 0.97002 * 120.00116 * 355.51133 * 11 9 8 33 33 H 1.08005 * 120.60041 * 359.97438 * 13 12 11 34 34 H 0.96998 * 120.00296 * 180.02562 * 18 17 15 35 35 H 1.08006 * 120.48795 * 179.75875 * 23 14 13 36 36 H 1.07993 * 119.44834 * 180.02562 * 24 23 14 37 37 H 1.08004 * 120.01152 * 179.97438 * 26 6 5 38 38 H 1.08002 * 119.99042 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2661 0.7894 -0.9189 5 6 4.6371 0.7950 -0.9159 6 6 5.3377 0.0064 0.0037 7 6 6.8092 0.0113 0.0072 8 6 7.4801 0.1561 1.1680 9 6 6.7663 0.5625 2.3807 10 8 5.5936 0.8816 2.3184 11 7 7.4082 0.5830 3.5655 12 6 6.7574 1.0581 4.7023 13 6 7.4588 1.1796 5.8921 14 6 6.7862 1.6666 7.0291 15 6 7.4584 1.8145 8.2659 16 1 8.2805 1.1600 8.5154 17 6 7.0574 2.8094 9.1662 18 7 6.0497 3.5889 8.8727 19 14 7.9626 3.0228 10.7862 20 1 9.0020 4.0729 10.6380 21 1 6.9991 3.4255 11.8421 22 1 8.6059 1.7395 11.1666 23 6 5.4199 1.9978 6.9000 24 6 4.8068 1.8382 5.6787 25 7 5.4747 1.3825 4.6342 26 6 4.6380 -0.7878 0.9191 27 6 3.2669 -0.7922 0.9147 28 1 2.7253 1.3984 -1.6282 29 1 5.1764 1.4083 -1.6228 30 1 7.3519 -0.1010 -0.9197 31 1 8.5438 -0.0275 1.2034 32 1 8.3233 0.2670 3.6269 33 1 8.5031 0.9092 5.9448 34 1 5.7722 4.2783 9.4961 35 1 4.8641 2.3712 7.7474 36 1 3.7621 2.0899 5.5722 37 1 5.1778 -1.3971 1.6289 38 1 2.7267 -1.4047 1.6214 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492172655.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:24 Heat of formation + Delta-G solvation = 70.296593 kcal Electronic energy + Delta-G solvation = -24373.953277 eV Core-core repulsion = 20760.705850 eV Total energy + Delta-G solvation = -3613.247428 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33419 -40.35809 -39.34549 -37.57686 -36.22701 -35.23925 -34.67266 -32.54650 -32.03798 -31.31875 -30.05630 -27.89399 -25.96210 -23.99128 -23.66132 -23.56402 -22.19899 -20.37754 -19.87650 -19.56657 -18.34338 -17.68504 -16.92642 -16.50828 -16.25473 -15.98797 -15.90173 -15.63907 -15.39609 -15.14476 -14.93948 -14.73526 -14.44332 -14.31481 -14.15000 -14.06247 -13.86411 -13.63472 -13.17762 -13.09807 -12.90899 -12.76285 -12.41044 -12.08101 -12.02236 -11.79239 -11.40885 -11.15881 -10.93720 -10.62685 -9.89985 -9.84446 -9.63209 -9.09244 -8.78045 -8.50293 -6.59143 -0.47412 0.47311 0.63516 0.89958 1.09741 1.41034 1.55441 1.57155 1.57380 1.99440 2.19810 2.31742 2.53508 2.86993 2.89096 3.02857 3.74412 3.77622 3.88351 3.99048 4.01671 4.27429 4.42575 4.58929 4.66906 4.76239 4.87566 4.89055 4.97561 5.06736 5.08543 5.13449 5.28807 5.30929 5.42051 5.46386 5.49764 5.66910 5.71131 5.95923 6.03234 6.19851 6.40488 6.51224 6.71560 6.83056 6.87019 7.44797 7.88394 8.32795 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019194 B = 0.002850 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.444713 B = 9822.981041 C =10968.594976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.280 3.720 3 C -0.048 4.048 4 C -0.073 4.073 5 C -0.104 4.104 6 C -0.035 4.035 7 C -0.023 4.023 8 C -0.198 4.198 9 C 0.507 3.493 10 O -0.504 6.504 11 N -0.648 5.648 12 C 0.347 3.653 13 C -0.308 4.308 14 C 0.113 3.887 15 C -0.484 4.484 16 H 0.086 0.914 17 C 0.030 3.970 18 N -0.829 5.829 19 Si 0.994 3.006 20 H -0.263 1.263 21 H -0.270 1.270 22 H -0.254 1.254 23 C -0.241 4.241 24 C 0.093 3.907 25 N -0.562 5.562 26 C -0.066 4.066 27 C -0.085 4.085 28 H 0.151 0.849 29 H 0.166 0.834 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.425 0.575 33 H 0.123 0.877 34 H 0.288 0.712 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -6.546 -16.735 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.034 4.034 3 C -0.051 4.051 4 C -0.093 4.093 5 C -0.122 4.122 6 C -0.036 4.036 7 C -0.042 4.042 8 C -0.218 4.218 9 C 0.297 3.703 10 O -0.378 6.378 11 N -0.296 5.296 12 C 0.118 3.882 13 C -0.333 4.333 14 C 0.105 3.895 15 C -0.515 4.515 16 H 0.104 0.896 17 C -0.185 4.185 18 N -0.456 5.456 19 Si 0.814 3.186 20 H -0.188 1.188 21 H -0.194 1.194 22 H -0.178 1.178 23 C -0.265 4.265 24 C -0.058 4.058 25 N -0.282 5.282 26 C -0.084 4.084 27 C -0.105 4.105 28 H 0.169 0.831 29 H 0.183 0.817 30 H 0.208 0.792 31 H 0.194 0.806 32 H 0.264 0.736 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.132 0.868 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.249 -6.233 -17.571 19.122 hybrid contribution 1.070 0.317 2.222 2.487 sum 5.319 -5.917 -15.348 17.288 Atomic orbital electron populations 1.81221 1.13291 1.10255 1.10007 1.26075 0.92992 0.92186 0.92133 1.16147 0.83168 1.03883 1.01920 1.21135 0.94869 0.96484 0.96835 1.21320 0.93276 0.98686 0.98923 1.19503 0.94615 0.95299 0.94182 1.22823 0.91108 0.91331 0.98908 1.23242 1.02505 1.05550 0.90542 1.19575 0.87330 0.79053 0.84341 1.90972 1.16307 1.45001 1.85470 1.43439 1.17513 1.62498 1.06106 1.18283 0.89497 0.94199 0.86239 1.21511 1.00331 1.19055 0.92438 1.18037 0.91355 0.87079 0.93019 1.19870 1.15587 1.15564 1.00510 0.89626 1.26902 0.94873 0.93758 1.02944 1.69799 1.23227 1.15476 1.37075 0.85008 0.78336 0.79747 0.75498 1.18809 1.19428 1.17785 1.22443 0.96262 1.09168 0.98584 1.22167 0.98707 0.96154 0.88804 1.67367 1.07634 1.21208 1.31953 1.20891 0.93316 0.98484 0.95724 1.20877 0.94730 0.98012 0.96897 0.83104 0.81651 0.79180 0.80642 0.73649 0.85858 0.90134 0.85925 0.84944 0.86762 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -14.99 18.54 19.00 0.35 -14.64 16 2 C 0.28 7.75 15.32 88.33 1.35 9.10 16 3 C -0.05 -1.15 5.74 -21.29 -0.12 -1.28 16 4 C -0.07 -1.37 9.71 22.38 0.22 -1.15 16 5 C -0.10 -1.72 9.75 22.41 0.22 -1.50 16 6 C -0.04 -0.68 4.34 -20.11 -0.09 -0.77 16 7 C -0.02 -0.30 9.77 23.83 0.23 -0.07 16 8 C -0.20 -3.25 9.92 23.64 0.23 -3.02 16 9 C 0.51 15.19 6.91 86.39 0.60 15.79 16 10 O -0.50 -19.26 10.74 -4.31 -0.05 -19.31 16 11 N -0.65 -20.81 5.38 -312.47 -1.68 -22.49 16 12 C 0.35 15.38 7.41 132.80 0.98 16.37 16 13 C -0.31 -14.30 9.73 22.99 0.22 -14.08 16 14 C 0.11 5.99 5.61 -21.12 -0.12 5.87 16 15 C -0.48 -24.89 9.13 23.52 0.21 -24.67 16 16 H 0.09 4.13 7.85 -2.91 -0.02 4.11 16 17 C 0.03 1.45 5.43 85.29 0.46 1.91 16 18 N -0.83 -42.46 10.49 21.84 0.23 -42.23 16 19 Si 0.99 36.60 29.56 68.60 2.03 38.63 16 20 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 22 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 23 C -0.24 -12.89 8.79 22.84 0.20 -12.69 16 24 C 0.09 4.73 11.15 84.50 0.94 5.67 16 25 N -0.56 -27.79 7.84 -193.60 -1.52 -29.31 16 26 C -0.07 -1.62 6.75 22.42 0.15 -1.47 16 27 C -0.08 -2.18 9.71 22.38 0.22 -1.96 16 28 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 30 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 31 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.43 9.78 8.68 -92.71 -0.80 8.98 16 33 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 34 H 0.29 13.36 8.29 -92.71 -0.77 12.59 16 35 H 0.12 6.83 6.00 -2.91 -0.02 6.81 16 36 H 0.13 6.19 8.06 -2.91 -0.02 6.16 16 37 H 0.11 2.94 7.44 -2.91 -0.02 2.92 16 38 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -73.57 343.70 5.61 -67.96 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.32 Total: 29.34 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 5.92 Total: -7.95 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -2.62 Total: -108.67 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -73.57 5.61 -67.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492172655.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.260 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds