Wall clock time and date at job start Tue Mar 31 2020 12:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 119.99944 * 2 1 4 4 H 1.48500 * 109.47222 * 270.00107 * 3 2 1 5 5 H 1.48500 * 109.47392 * 29.99656 * 3 2 1 6 6 H 1.48499 * 109.47030 * 149.99975 * 3 2 1 7 7 C 1.37872 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99496 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00197 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.43582 * 57.46491 * 9 7 2 11 11 C 1.54890 * 110.60261 * 294.84447 * 9 7 2 12 12 C 1.54893 * 102.75202 * 203.32496 * 11 9 7 13 13 C 1.54274 * 104.19405 * 37.94103 * 12 11 9 14 14 H 1.09000 * 110.06668 * 217.08598 * 13 12 11 15 15 N 1.46500 * 110.02982 * 95.67757 * 13 12 11 16 16 C 1.34776 * 119.99885 * 87.83314 * 15 13 12 17 17 O 1.21705 * 119.99926 * 359.97438 * 16 15 13 18 18 C 1.46389 * 119.99600 * 179.97438 * 16 15 13 19 19 C 1.34846 * 119.99494 * 187.06050 * 18 16 15 20 20 C 1.47158 * 120.00315 * 11.31559 * 19 18 16 21 21 C 1.39864 * 120.15364 * 42.52916 * 20 19 18 22 22 C 1.37837 * 119.84106 * 179.97438 * 21 20 19 23 23 C 1.38550 * 120.15639 * 359.97438 * 22 21 20 24 24 Cl 1.73597 * 119.84215 * 180.02562 * 23 22 21 25 25 C 1.38550 * 120.31437 * 359.97438 * 23 22 21 26 26 C 1.37830 * 120.16115 * 0.03890 * 25 23 22 27 27 C 1.53879 * 106.59808 * 336.38992 * 13 12 11 28 28 H 0.97000 * 119.99763 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.75730 * 321.63690 * 11 9 7 30 30 H 1.09001 * 110.75646 * 85.00977 * 11 9 7 31 31 H 1.08997 * 110.48426 * 279.26574 * 12 11 9 32 32 H 1.08996 * 110.49248 * 156.61799 * 12 11 9 33 33 H 0.97001 * 119.99958 * 267.83245 * 15 13 12 34 34 H 1.07999 * 120.00201 * 7.06693 * 18 16 15 35 35 H 1.08006 * 119.99777 * 191.31844 * 19 18 16 36 36 H 1.08002 * 120.08033 * 0.25041 * 21 20 19 37 37 H 1.07997 * 119.92552 * 179.97438 * 22 21 20 38 38 H 1.08001 * 119.91728 * 180.02562 * 25 23 22 39 39 H 1.07997 * 120.08027 * 179.97438 * 26 25 23 40 40 H 1.08997 * 110.02704 * 119.28271 * 27 13 12 41 41 H 1.09000 * 110.03009 * 240.71485 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4514 -2.6668 1.3154 12 6 0.2733 -4.2023 1.4139 13 6 1.6109 -4.7722 0.8982 14 1 1.4332 -5.6798 0.3214 15 7 2.5013 -5.0605 2.0253 16 6 2.4455 -6.2592 2.6387 17 8 1.6550 -7.1021 2.2565 18 6 3.3356 -6.5475 3.7645 19 6 3.3817 -7.7899 4.2865 20 6 2.7368 -8.9089 3.5811 21 6 2.8630 -9.0308 2.1935 22 6 2.2568 -10.0817 1.5393 23 6 1.5241 -11.0162 2.2531 24 17 0.7645 -12.3369 1.4210 25 6 1.3958 -10.9023 3.6279 26 6 1.9964 -9.8565 4.2952 27 6 2.2325 -3.6892 -0.0011 28 1 -0.4850 0.8401 -0.0004 29 1 1.0211 -2.2888 2.1644 30 1 -0.5159 -2.1694 1.2457 31 1 -0.5509 -4.5320 0.7814 32 1 0.1048 -4.5013 2.4484 33 1 3.1311 -4.3886 2.3301 34 1 3.9552 -5.7650 4.1771 35 1 3.8920 -7.9639 5.2224 36 1 3.4379 -8.3057 1.6364 37 1 2.3530 -10.1769 0.4679 38 1 0.8236 -11.6347 4.1780 39 1 1.8952 -9.7688 5.3669 40 1 3.1967 -3.3782 0.4011 41 1 2.3558 -4.0711 -1.0146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493199171.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:53 Heat of formation + Delta-G solvation = -22.098832 kcal Electronic energy + Delta-G solvation = -23593.998523 eV Core-core repulsion = 20077.852023 eV Total energy + Delta-G solvation = -3516.146500 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.21075 -39.94247 -38.62725 -37.40754 -35.21896 -34.58791 -33.71123 -31.98656 -30.54684 -29.92931 -28.71643 -25.98640 -24.81234 -23.64784 -22.77995 -21.29724 -20.87955 -20.17561 -18.58692 -18.49669 -17.70482 -16.85981 -16.67025 -16.47085 -16.11955 -15.83491 -15.36473 -15.08402 -14.82131 -14.46522 -14.36791 -14.19378 -13.99451 -13.76071 -13.55220 -12.94194 -12.81684 -12.69028 -12.51498 -12.43044 -12.36323 -12.27770 -12.13376 -11.75954 -11.65399 -11.44852 -11.07413 -10.84018 -10.79428 -10.65592 -10.44506 -10.03920 -9.63873 -9.01129 -8.09565 -6.19317 -0.31405 0.47246 0.83828 1.18102 1.43234 1.44508 1.53779 2.37396 2.43751 2.49389 2.81234 3.21790 3.77639 3.86137 3.91835 3.97926 4.03455 4.11277 4.23054 4.38027 4.47604 4.61024 4.70147 4.77398 4.81388 4.94127 5.01615 5.01890 5.07452 5.11395 5.19230 5.21394 5.28470 5.32840 5.43834 5.44391 5.65209 5.66874 5.75299 5.90354 5.92162 6.00244 6.38754 6.74950 6.92498 7.40588 7.48531 8.99394 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.002498 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.323290 B =11204.790889 C =11763.896286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.039 3.961 10 H -0.003 1.003 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.155 3.845 14 H 0.073 0.927 15 N -0.704 5.704 16 C 0.526 3.474 17 O -0.568 6.568 18 C -0.210 4.210 19 C -0.020 4.020 20 C -0.077 4.077 21 C -0.034 4.034 22 C -0.141 4.141 23 C -0.038 4.038 24 Cl -0.080 7.080 25 C -0.131 4.131 26 C -0.090 4.090 27 C -0.110 4.110 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.410 0.590 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.634 -20.063 10.984 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.015 0.985 11 C -0.127 4.127 12 C -0.162 4.162 13 C 0.050 3.950 14 H 0.092 0.908 15 N -0.354 5.354 16 C 0.316 3.684 17 O -0.450 6.450 18 C -0.230 4.230 19 C -0.040 4.040 20 C -0.078 4.078 21 C -0.052 4.052 22 C -0.159 4.159 23 C -0.064 4.064 24 Cl -0.051 7.051 25 C -0.149 4.149 26 C -0.108 4.108 27 C -0.148 4.148 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.184 0.816 35 H 0.196 0.804 36 H 0.133 0.867 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.177 0.823 40 H 0.091 0.909 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.868 -20.627 10.607 24.493 hybrid contribution -0.072 1.514 -0.552 1.613 sum 7.797 -19.113 10.056 22.961 Atomic orbital electron populations 1.70108 1.07395 1.27078 1.51581 1.25791 0.95581 1.02528 0.95035 0.85637 0.78917 0.79534 0.78049 1.20527 1.21452 1.18661 1.21557 0.93071 0.91596 1.50135 0.92177 1.19436 0.92988 0.92411 0.93140 0.98501 1.22217 0.99212 0.92581 0.98660 1.22704 0.97016 0.96650 0.99871 1.21368 0.89325 0.97335 0.87005 0.90837 1.46180 1.39619 1.16317 1.33302 1.19133 0.84303 0.81542 0.83405 1.90864 1.41208 1.46519 1.66418 1.23208 1.01773 0.99829 0.98222 1.22712 0.93322 0.90191 0.97734 1.19307 0.99326 0.95877 0.93257 1.21080 0.96502 0.93969 0.93680 1.20951 0.99527 0.95020 1.00444 1.21172 0.99797 0.91952 0.93510 1.98350 1.80743 1.47088 1.78914 1.21120 1.01715 1.00257 0.91856 1.21479 0.95764 0.92380 1.01140 1.22420 0.99595 0.94554 0.98240 0.93276 0.93968 0.94803 0.92594 0.92622 0.75362 0.81619 0.80383 0.86717 0.85423 0.83434 0.82260 0.90887 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 12.29 21.45 0.26 -53.03 16 2 C 0.01 0.50 5.35 84.65 0.45 0.95 16 3 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.53 -27.62 8.47 25.60 0.22 -27.40 16 8 H 0.06 3.02 7.54 -2.91 -0.02 3.00 16 9 C 0.04 1.88 2.71 -10.47 -0.03 1.85 16 10 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 11 C -0.09 -4.06 5.75 31.89 0.18 -3.87 16 12 C -0.12 -4.75 6.54 31.67 0.21 -4.54 16 13 C 0.15 5.29 3.25 45.72 0.15 5.44 16 14 H 0.07 2.60 7.56 -2.39 -0.02 2.58 16 15 N -0.70 -19.40 5.03 -443.33 -2.23 -21.63 16 16 C 0.53 13.98 6.73 86.36 0.58 14.57 16 17 O -0.57 -18.81 11.78 -4.36 -0.05 -18.86 16 18 C -0.21 -3.65 9.90 23.61 0.23 -3.42 16 19 C -0.02 -0.30 9.81 23.83 0.23 -0.07 16 20 C -0.08 -1.59 4.58 -20.15 -0.09 -1.68 16 21 C -0.03 -0.82 6.57 22.57 0.15 -0.68 16 22 C -0.14 -3.48 9.81 22.25 0.22 -3.26 16 23 C -0.04 -0.87 6.33 22.42 0.14 -0.73 16 24 Cl -0.08 -1.72 28.95 -2.72 -0.08 -1.80 16 25 C -0.13 -2.57 9.81 22.25 0.22 -2.35 16 26 C -0.09 -1.61 9.79 22.57 0.22 -1.39 16 27 C -0.11 -4.14 6.13 31.32 0.19 -3.95 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.04 1.93 8.05 -2.39 -0.02 1.91 16 30 H 0.03 1.74 7.56 -2.39 -0.02 1.72 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.06 2.06 8.04 -2.39 -0.02 2.05 16 33 H 0.41 9.63 8.30 -92.71 -0.77 8.86 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.11 2.87 6.93 -2.91 -0.02 2.85 16 37 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.07 2.58 7.13 -2.39 -0.02 2.56 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -65.89 354.59 3.48 -62.41 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.27 Total: 18.97 kcal Atomic # 6 Polarization: -33.83 SS G_CDS: 3.28 Total: -30.55 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.96 Total: -74.66 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.05 Total: -18.86 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.08 Total: -1.80 kcal Total: -65.89 3.48 -62.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493199171.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.307 kcal (2) G-P(sol) polarization free energy of solvation -65.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds