Wall clock time and date at job start Tue Mar 31 2020 12:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00193 * 2 1 4 4 H 1.48498 * 109.46968 * 239.99749 * 3 2 1 5 5 H 1.48503 * 109.47220 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47427 * 119.99579 * 3 2 1 7 7 C 1.38956 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99242 * 160.52722 * 7 2 1 9 9 N 1.37095 * 120.00355 * 340.52411 * 7 2 1 10 10 C 1.34780 * 119.99851 * 317.34697 * 9 7 2 11 11 O 1.21297 * 119.99878 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99878 * 179.97438 * 10 9 7 13 13 H 1.08998 * 112.82890 * 311.10814 * 12 10 9 14 14 C 1.53523 * 113.58634 * 179.97438 * 12 10 9 15 15 C 1.51606 * 87.24906 * 245.40641 * 14 12 10 16 16 C 1.38977 * 92.75368 * 359.97438 * 15 14 12 17 17 C 1.38344 * 119.72720 * 179.97438 * 16 15 14 18 18 C 1.38141 * 120.35454 * 0.02562 * 17 16 15 19 19 C 1.38190 * 119.96862 * 0.02562 * 18 17 16 20 20 C 1.38257 * 119.93787 * 359.97438 * 19 18 17 21 21 Cl 1.73605 * 119.84465 * 179.97438 * 20 19 18 22 22 C 1.46496 * 120.00306 * 137.34756 * 9 7 2 23 23 C 1.53877 * 110.03342 * 55.48488 * 22 9 7 24 24 C 1.54260 * 106.64191 * 240.69797 * 23 22 9 25 25 C 1.54969 * 104.16044 * 336.44074 * 24 23 22 26 26 C 1.54269 * 110.02887 * 298.32378 * 22 9 7 27 27 H 0.97003 * 119.99581 * 355.04951 * 1 2 3 28 28 H 1.08996 * 113.58756 * 0.02562 * 14 12 10 29 29 H 1.09006 * 113.58820 * 130.73591 * 14 12 10 30 30 H 1.07997 * 119.82161 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.01832 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.02991 * 179.97438 * 19 18 17 33 33 H 1.08996 * 110.05774 * 176.90823 * 22 9 7 34 34 H 1.09004 * 110.02805 * 0.02562 * 23 22 9 35 35 H 1.08998 * 110.02853 * 121.38338 * 23 22 9 36 36 H 1.08992 * 110.49146 * 95.08998 * 24 23 22 37 37 H 1.09002 * 110.48263 * 217.73905 * 24 23 22 38 38 H 1.08998 * 110.72425 * 279.57787 * 25 24 23 39 39 H 1.08999 * 110.92514 * 156.29862 * 25 24 23 40 40 H 1.09003 * 110.48407 * 261.57096 * 26 22 9 41 41 H 1.09004 * 110.48800 * 24.08194 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0425 -1.2303 -0.3113 9 7 1.3822 -2.3566 0.3969 10 6 0.5804 -2.3496 1.4802 11 8 0.4136 -1.3232 2.1047 12 6 -0.1089 -3.6170 1.9155 13 1 -0.6152 -4.1262 1.0955 14 6 -0.9844 -3.4423 3.1645 15 6 -0.0231 -4.3718 3.8789 16 6 0.7691 -4.5305 2.7481 17 6 1.8901 -5.3393 2.8039 18 6 2.2246 -5.9890 3.9762 19 6 1.4370 -5.8327 5.1009 20 6 0.3155 -5.0258 5.0512 21 17 -0.6726 -4.8318 6.4654 22 6 1.5841 -3.5963 -0.3570 23 6 3.0862 -3.9159 -0.4536 24 6 3.4398 -3.9271 -1.9551 25 6 2.0913 -4.2209 -2.6600 26 6 1.0764 -3.4237 -1.8035 27 1 -0.4850 0.8370 0.0725 28 1 -0.9836 -2.4262 3.5590 29 1 -1.9885 -3.8520 3.0542 30 1 2.5066 -5.4640 1.9260 31 1 3.1007 -6.6194 4.0136 32 1 1.6973 -6.3405 6.0178 33 1 1.0578 -4.4186 0.1278 34 1 3.6649 -3.1486 0.0608 35 1 3.2890 -4.8928 -0.0149 36 1 3.8274 -2.9561 -2.2631 37 1 4.1631 -4.7135 -2.1708 38 1 1.8663 -5.2871 -2.6330 39 1 2.1011 -3.8556 -3.6869 40 1 0.0758 -3.8430 -1.9092 41 1 1.0797 -2.3709 -2.0859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528630462.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:28 Heat of formation + Delta-G solvation = 8.830721 kcal Electronic energy + Delta-G solvation = -25242.763047 eV Core-core repulsion = 21727.957753 eV Total energy + Delta-G solvation = -3514.805294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90289 -40.06620 -38.37157 -37.48065 -36.12839 -35.05604 -33.43167 -31.52106 -29.45508 -28.84964 -28.38142 -27.27608 -25.38608 -23.14090 -22.06735 -21.35416 -21.19488 -20.43380 -18.59625 -17.77232 -17.68008 -16.92490 -16.58130 -16.23643 -15.93255 -15.78163 -15.45918 -15.11357 -14.65855 -14.22158 -14.13351 -14.03802 -13.78601 -13.52468 -13.02953 -12.89751 -12.81629 -12.74744 -12.54610 -12.35103 -12.28955 -12.22681 -12.07948 -11.81578 -11.75639 -11.70752 -11.60236 -11.31539 -11.27380 -10.71337 -10.24985 -9.61854 -9.52788 -9.03354 -8.14808 -5.91141 0.18552 0.23293 1.17824 1.36555 1.44211 1.47520 2.22462 2.41010 2.63275 3.11089 3.15880 3.29598 3.42035 3.60584 3.90169 3.96121 4.03833 4.09948 4.30770 4.35323 4.40390 4.53452 4.62290 4.65244 4.73176 4.80352 4.83791 4.87443 4.91269 4.97703 5.06489 5.15092 5.20218 5.21692 5.32352 5.38295 5.45960 5.58437 5.60497 5.64689 5.70651 5.85927 6.26682 7.08923 7.26033 7.75549 8.39534 8.91592 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.005054 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.656714 B = 5538.808281 C = 6844.133469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.024 3.976 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.338 4.338 8 H 0.079 0.921 9 N -0.450 5.450 10 C 0.479 3.521 11 O -0.585 6.585 12 C -0.060 4.060 13 H 0.119 0.881 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.107 4.107 17 C -0.093 4.093 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.023 4.023 21 Cl -0.081 7.081 22 C 0.123 3.877 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.128 4.128 27 H 0.255 0.745 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.175 0.825 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 -16.787 2.610 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.182 4.182 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.170 5.170 10 C 0.267 3.733 11 O -0.467 6.467 12 C -0.081 4.081 13 H 0.137 0.863 14 C -0.090 4.090 15 C -0.133 4.133 16 C -0.108 4.108 17 C -0.111 4.111 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.049 4.049 21 Cl -0.052 7.052 22 C 0.019 3.981 23 C -0.164 4.164 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.167 4.167 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.159 0.841 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.660 -16.137 2.965 16.810 hybrid contribution -0.264 1.679 0.200 1.712 sum 3.396 -14.458 3.165 15.185 Atomic orbital electron populations 1.69977 1.07682 1.27593 1.44909 1.25854 0.95283 1.02032 0.95075 0.85632 0.78385 0.79506 0.78546 1.18213 1.21732 1.21184 1.18996 0.94855 0.85802 1.46953 0.90319 1.43520 1.43089 1.08153 1.22250 1.20041 0.83304 0.88632 0.81322 1.90476 1.64490 1.35302 1.56439 1.21422 0.95198 0.93252 0.98261 0.86336 1.21697 0.97623 0.98301 0.91361 1.22111 0.99741 0.98294 0.93197 1.21883 0.96266 0.97177 0.95427 1.20812 0.94765 0.95445 1.00064 1.21362 1.00226 0.99325 0.90528 1.21277 0.92540 0.97982 1.01042 1.20537 0.95961 1.01865 0.86550 1.98342 1.70133 1.96787 1.39986 1.22021 0.96751 0.86917 0.92413 1.22421 0.94915 1.01315 0.97728 1.22264 0.97584 1.01223 0.94040 1.22414 0.94030 1.00188 0.98140 1.22612 0.98588 1.00274 0.95215 0.93556 0.90397 0.86931 0.84113 0.80720 0.81920 0.89703 0.93347 0.89596 0.93467 0.89441 0.89520 0.91487 0.92541 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.46 11.68 21.67 0.25 -52.21 16 2 C 0.02 1.34 4.34 84.93 0.37 1.71 16 3 Si 0.95 46.09 29.60 68.60 2.03 48.12 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.34 -18.24 7.53 84.04 0.63 -17.61 16 8 H 0.08 4.12 6.95 -2.91 -0.02 4.10 16 9 N -0.45 -21.69 2.47 -609.37 -1.50 -23.20 16 10 C 0.48 24.24 6.51 87.66 0.57 24.81 16 11 O -0.59 -35.55 13.35 -3.08 -0.04 -35.59 16 12 C -0.06 -2.33 2.91 -11.83 -0.03 -2.36 16 13 H 0.12 4.12 7.37 -2.39 -0.02 4.10 16 14 C -0.05 -1.94 7.77 30.30 0.24 -1.71 16 15 C -0.13 -4.45 7.26 -19.36 -0.14 -4.59 16 16 C -0.11 -3.54 6.52 -19.38 -0.13 -3.67 16 17 C -0.09 -2.44 10.03 22.27 0.22 -2.21 16 18 C -0.10 -1.99 10.04 22.24 0.22 -1.77 16 19 C -0.11 -2.47 9.82 22.26 0.22 -2.25 16 20 C -0.02 -0.65 6.32 22.32 0.14 -0.51 16 21 Cl -0.08 -2.18 28.94 -2.72 -0.08 -2.25 16 22 C 0.12 4.48 3.16 45.72 0.14 4.62 16 23 C -0.13 -3.83 6.18 31.32 0.19 -3.64 16 24 C -0.11 -3.00 6.84 31.69 0.22 -2.78 16 25 C -0.11 -2.85 6.91 31.91 0.22 -2.63 16 26 C -0.13 -4.55 6.42 31.67 0.20 -4.34 16 27 H 0.26 15.22 8.32 -92.71 -0.77 14.45 16 28 H 0.08 3.40 7.04 -2.39 -0.02 3.38 16 29 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 30 H 0.14 3.17 7.19 -2.91 -0.02 3.15 16 31 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.08 2.76 5.49 -2.39 -0.01 2.75 16 34 H 0.05 1.76 6.71 -2.39 -0.02 1.74 16 35 H 0.09 2.02 7.27 -2.39 -0.02 2.01 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.05 2.05 7.19 -2.39 -0.02 2.03 16 Total: -1.00 -72.36 344.42 5.00 -67.36 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.05 Total: 16.69 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 3.29 Total: -18.93 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.25 Total: -75.40 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.04 Total: -35.59 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.25 kcal Total: -72.36 5.00 -67.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528630462.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.195 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds