Wall clock time and date at job start Tue Mar 31 2020 12:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86793 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47147 * 269.99978 * 3 2 1 5 5 H 1.48501 * 109.47341 * 29.99457 * 3 2 1 6 6 H 1.48496 * 109.47308 * 150.00029 * 3 2 1 7 7 C 1.40029 * 119.99502 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99420 * 161.45126 * 7 2 1 9 9 C 1.41541 * 120.00669 * 341.45881 * 7 2 1 10 10 C 1.41180 * 121.00023 * 152.68541 * 9 7 2 11 11 C 1.37584 * 119.01871 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.11643 * 359.97438 * 11 10 9 13 13 C 1.32483 * 122.22906 * 0.02562 * 12 11 10 14 14 N 1.39366 * 119.58645 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99607 * 354.24739 * 14 13 12 16 16 O 1.21605 * 120.00506 * 354.96362 * 15 14 13 17 17 C 1.47406 * 120.00027 * 174.95749 * 15 14 13 18 18 C 1.38978 * 121.16764 * 359.71981 * 17 15 14 19 19 N 1.32201 * 121.30815 * 179.67607 * 18 17 15 20 20 C 1.31195 * 123.70023 * 0.65292 * 19 18 17 21 21 C 1.40393 * 120.91688 * 359.65045 * 20 19 18 22 22 C 1.40391 * 122.13799 * 179.97438 * 21 20 19 23 23 C 1.36227 * 119.48771 * 180.02562 * 22 21 20 24 24 C 1.39289 * 121.10425 * 0.03422 * 23 22 21 25 25 C 1.36446 * 120.94492 * 0.02562 * 24 23 22 26 26 C 1.39679 * 119.43921 * 359.97101 * 25 24 23 27 27 C 1.38634 * 120.83307 * 359.97438 * 13 12 11 28 28 H 0.97002 * 119.99845 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.48590 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.43931 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00380 * 174.25069 * 14 13 12 32 32 H 1.07995 * 119.34909 * 0.02562 * 18 17 15 33 33 H 1.07999 * 119.53946 * 179.67145 * 20 19 18 34 34 H 1.08003 * 120.25613 * 0.04412 * 22 21 20 35 35 H 1.08000 * 119.44930 * 180.02562 * 23 22 21 36 36 H 1.07997 * 119.52922 * 179.97438 * 24 23 22 37 37 H 1.07998 * 120.28191 * 179.97438 * 25 24 23 38 38 H 1.08005 * 120.59911 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6527 0.6999 6 1 3.5390 1.4401 0.7000 7 6 2.0075 -1.2127 0.0005 8 1 3.0455 -1.2372 -0.2970 9 6 1.3550 -2.4066 0.3908 10 6 1.7738 -3.6600 -0.1058 11 6 1.1099 -4.7945 0.3003 12 7 0.0945 -4.7266 1.1423 13 6 -0.3373 -3.5761 1.6371 14 7 -1.4143 -3.5684 2.5216 15 6 -2.0831 -4.7098 2.7788 16 8 -1.8069 -5.7266 2.1716 17 6 -3.1495 -4.7259 3.7964 18 6 -3.4812 -3.5797 4.5089 19 7 -4.4413 -3.5894 5.4176 20 6 -5.1389 -4.6563 5.7282 21 6 -4.9030 -5.8837 5.0887 22 6 -5.6335 -7.0411 5.4012 23 6 -5.3592 -8.2042 4.7472 24 6 -4.3651 -8.2649 3.7735 25 6 -3.6352 -7.1596 3.4460 26 6 -3.8906 -5.9506 4.0972 27 6 0.2686 -2.3796 1.2861 28 1 -0.4850 0.8401 -0.0004 29 1 2.6025 -3.7271 -0.7950 30 1 1.4248 -5.7569 -0.0751 31 1 -1.6826 -2.7415 2.9520 32 1 -2.9478 -2.6614 4.3124 33 1 -5.9054 -4.5893 6.4860 34 1 -6.4073 -7.0095 6.1541 35 1 -5.9219 -9.0941 4.9877 36 1 -4.1685 -9.2005 3.2711 37 1 -2.8666 -7.2189 2.6896 38 1 -0.0863 -1.4438 1.6921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531671257.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:08 Heat of formation + Delta-G solvation = 45.559904 kcal Electronic energy + Delta-G solvation = -24729.772633 eV Core-core repulsion = 21115.452542 eV Total energy + Delta-G solvation = -3614.320091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.02859 -40.94698 -39.45856 -38.36748 -36.20219 -35.60287 -33.81596 -32.52125 -32.18551 -31.28154 -29.93929 -27.93527 -26.18983 -24.53428 -24.14416 -23.92397 -22.87642 -21.61408 -19.64039 -19.14519 -18.75459 -18.36800 -17.56217 -17.00383 -16.74080 -16.40120 -16.17070 -16.06075 -15.76426 -15.62303 -15.12280 -14.87625 -14.71927 -14.36494 -14.27160 -14.17694 -13.70148 -13.25559 -13.18606 -12.98158 -12.90640 -12.64681 -12.42330 -12.08969 -11.97541 -11.58892 -11.15607 -11.13243 -11.11380 -10.51226 -10.10280 -9.97467 -9.65385 -9.21846 -8.90124 -8.70483 -6.58103 -1.00336 -0.15674 0.54956 0.85535 0.96951 1.40494 1.50862 1.57072 1.81546 1.92646 2.18988 2.21616 2.77260 3.04693 3.14971 3.46756 3.55616 3.68518 3.69515 3.84636 3.90859 4.15223 4.27050 4.31747 4.47188 4.59017 4.72305 4.74482 4.75606 4.88634 4.98880 5.02756 5.14575 5.17992 5.39138 5.42619 5.49712 5.52157 5.60711 5.86180 5.90235 6.06996 6.38081 6.50488 6.75313 6.78140 6.80069 7.14433 7.75232 8.24505 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.003086 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.214690 B = 9070.166637 C =10256.344471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.488 4.488 8 H 0.086 0.914 9 C 0.119 3.881 10 C -0.296 4.296 11 C 0.115 3.885 12 N -0.578 5.578 13 C 0.335 3.665 14 N -0.646 5.646 15 C 0.550 3.450 16 O -0.510 6.510 17 C -0.200 4.200 18 C 0.128 3.872 19 N -0.518 5.518 20 C 0.193 3.807 21 C -0.137 4.137 22 C -0.070 4.070 23 C -0.122 4.122 24 C -0.086 4.086 25 C -0.153 4.153 26 C -0.008 4.008 27 C -0.256 4.256 28 H 0.293 0.707 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.420 0.580 32 H 0.168 0.832 33 H 0.215 0.785 34 H 0.183 0.817 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -7.521 12.605 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.176 4.176 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.518 4.518 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.319 4.319 11 C -0.038 4.038 12 N -0.298 5.298 13 C 0.110 3.890 14 N -0.293 5.293 15 C 0.338 3.662 16 O -0.384 6.384 17 C -0.205 4.205 18 C -0.015 4.015 19 N -0.225 5.225 20 C 0.022 3.978 21 C -0.139 4.139 22 C -0.089 4.089 23 C -0.140 4.140 24 C -0.105 4.105 25 C -0.171 4.171 26 C -0.013 4.013 27 C -0.281 4.281 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.169 0.831 31 H 0.258 0.742 32 H 0.185 0.815 33 H 0.232 0.768 34 H 0.200 0.800 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.638 -8.056 12.802 20.367 hybrid contribution 1.298 1.201 -1.180 2.126 sum -12.340 -6.855 11.622 18.285 Atomic orbital electron populations 1.69829 1.09179 1.31206 1.33513 1.26816 0.95465 1.04596 0.90687 0.85153 0.79173 0.75520 0.79600 1.18686 1.18813 1.18152 1.19830 0.98967 0.91841 1.41196 0.89587 1.17969 0.89948 0.93425 0.87573 1.22118 1.07238 0.93810 1.08753 1.22230 0.90654 0.98070 0.92873 1.67302 1.17957 1.26811 1.17737 1.18319 0.88661 0.90541 0.91528 1.43300 1.29888 1.12112 1.44022 1.18456 0.81661 0.83294 0.82756 1.90686 1.65415 1.32566 1.49764 1.21799 1.00527 0.96707 1.01482 1.22955 0.92532 0.96469 0.89580 1.67243 1.07321 1.31853 1.16113 1.24116 0.94192 0.85322 0.94136 1.19336 0.98140 0.98083 0.98368 1.21497 0.98187 0.90032 0.99226 1.21419 0.97291 0.99910 0.95368 1.21508 0.94196 0.98326 0.96484 1.21672 1.01638 0.92653 1.01107 1.19156 0.94262 0.92523 0.95406 1.21381 1.04843 0.95328 1.06566 0.89616 0.86393 0.83054 0.74177 0.81496 0.76824 0.80008 0.81583 0.83719 0.85147 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.45 11.27 21.84 0.25 -40.20 16 2 C 0.04 2.02 5.13 85.29 0.44 2.46 16 3 Si 0.99 36.07 29.60 68.60 2.03 38.10 16 4 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.49 -25.38 9.09 23.52 0.21 -25.16 16 8 H 0.09 4.27 7.91 -2.91 -0.02 4.24 16 9 C 0.12 6.42 5.55 -21.12 -0.12 6.30 16 10 C -0.30 -14.82 9.90 22.84 0.23 -14.59 16 11 C 0.12 5.64 11.15 84.50 0.94 6.58 16 12 N -0.58 -30.40 7.89 -193.59 -1.53 -31.93 16 13 C 0.33 16.92 7.40 132.79 0.98 17.90 16 14 N -0.65 -27.10 5.34 -311.65 -1.66 -28.76 16 15 C 0.55 22.93 7.72 86.66 0.67 23.60 16 16 O -0.51 -24.61 12.03 -4.05 -0.05 -24.65 16 17 C -0.20 -6.67 6.07 -18.60 -0.11 -6.78 16 18 C 0.13 3.59 10.71 84.81 0.91 4.50 16 19 N -0.52 -12.59 10.22 -193.70 -1.98 -14.57 16 20 C 0.19 3.49 11.00 85.31 0.94 4.43 16 21 C -0.14 -2.88 5.74 -21.33 -0.12 -3.00 16 22 C -0.07 -0.93 9.82 22.33 0.22 -0.71 16 23 C -0.12 -1.72 9.94 22.05 0.22 -1.50 16 24 C -0.09 -1.81 9.96 22.10 0.22 -1.59 16 25 C -0.15 -4.66 9.32 22.20 0.21 -4.45 16 26 C -0.01 -0.25 5.90 -19.94 -0.12 -0.37 16 27 C -0.26 -13.38 8.60 22.99 0.20 -13.18 16 28 H 0.29 13.05 8.29 -92.71 -0.77 12.28 16 29 H 0.12 5.38 8.06 -2.91 -0.02 5.35 16 30 H 0.15 6.33 8.06 -2.91 -0.02 6.31 16 31 H 0.42 14.53 6.82 -92.71 -0.63 13.90 16 32 H 0.17 4.08 6.45 -2.91 -0.02 4.06 16 33 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 36 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.13 4.92 5.24 -2.91 -0.02 4.91 16 38 H 0.12 6.06 6.53 -2.91 -0.02 6.04 16 Total: -1.00 -73.98 330.25 3.47 -70.51 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: 0.50 Total: 37.08 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.91 Total: -5.57 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.92 Total: -115.46 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 36.07 SS G_CDS: 2.03 Total: 38.10 kcal Total: -73.98 3.47 -70.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531671257.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.068 kcal (2) G-P(sol) polarization free energy of solvation -73.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds