Wall clock time and date at job start Tue Mar 31 2020 12:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46828 * 239.99811 * 3 2 1 5 5 H 1.48493 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46897 * 120.00139 * 3 2 1 7 7 C 1.40051 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00109 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99891 * 351.79366 * 9 7 2 11 11 N 1.34772 * 120.00181 * 171.78534 * 9 7 2 12 12 C 1.47078 * 120.88302 * 175.14331 * 11 9 7 13 13 C 1.53243 * 108.51989 * 231.16407 * 12 11 9 14 14 N 1.46901 * 109.34153 * 306.17155 * 13 12 11 15 15 C 1.37658 * 110.99665 * 187.25528 * 14 13 12 16 16 N 1.30861 * 124.96324 * 0.71078 * 15 14 13 17 17 C 1.36142 * 108.69888 * 180.09585 * 16 15 14 18 18 C 1.39552 * 133.63956 * 179.21655 * 17 16 15 19 19 C 1.37962 * 119.71335 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.83578 * 179.97438 * 19 18 17 21 21 C 1.38844 * 120.33675 * 359.97438 * 19 18 17 22 22 C 1.38021 * 120.43328 * 0.02562 * 21 19 18 23 23 C 1.38533 * 119.93261 * 0.28065 * 22 21 19 24 24 O 1.34453 * 124.95489 * 179.97438 * 15 14 13 25 25 C 1.46900 * 111.27024 * 63.10198 * 14 13 12 26 26 C 1.47081 * 120.88230 * 355.12363 * 11 9 7 27 27 H 0.97001 * 120.00284 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.62849 * 111.45924 * 12 11 9 29 29 H 1.08991 * 109.62895 * 350.87223 * 12 11 9 30 30 H 1.09005 * 109.49286 * 186.20770 * 13 12 11 31 31 H 1.08997 * 109.51594 * 66.14457 * 13 12 11 32 32 H 1.08006 * 120.14499 * 0.02562 * 18 17 16 33 33 H 1.07997 * 119.78503 * 180.02562 * 21 19 18 34 34 H 1.07994 * 120.03063 * 180.02562 * 22 21 19 35 35 H 1.09005 * 109.48840 * 56.85558 * 25 14 13 36 36 H 1.08991 * 109.49183 * 176.93573 * 25 14 13 37 37 H 1.08998 * 109.63271 * 248.54669 * 26 11 9 38 38 H 1.09007 * 109.62837 * 8.92389 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0676 -2.4858 0.1526 11 7 1.9385 -3.6418 -0.1646 12 6 1.2398 -4.9319 -0.0612 13 6 2.0127 -5.8273 0.9130 14 7 3.4157 -5.9132 0.4864 15 6 4.1053 -6.8351 1.2411 16 7 3.5868 -7.5553 2.2029 17 6 4.5598 -8.3514 2.7252 18 6 4.5846 -9.2916 3.7562 19 6 5.7597 -9.9512 4.0520 20 9 5.7867 -10.8615 5.0500 21 6 6.9148 -9.6842 3.3294 22 6 6.9016 -8.7563 2.3077 23 6 5.7312 -8.0809 2.0024 24 8 5.4065 -7.1371 1.0885 25 6 4.0690 -4.5984 0.5351 26 6 3.3804 -3.6527 -0.4546 27 1 -0.4850 0.8400 -0.0004 28 1 1.2002 -5.4064 -1.0417 29 1 0.2286 -4.7716 0.3124 30 1 1.5723 -6.8244 0.9181 31 1 1.9628 -5.4027 1.9157 32 1 3.6876 -9.5026 4.3195 33 1 7.8297 -10.2060 3.5683 34 1 7.8037 -8.5541 1.7496 35 1 3.9904 -4.1904 1.5429 36 1 5.1199 -4.7042 0.2660 37 1 3.5465 -4.0042 -1.4729 38 1 3.7837 -2.6460 -0.3445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577191311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:00 Heat of formation + Delta-G solvation = -9.810388 kcal Electronic energy + Delta-G solvation = -25896.453956 eV Core-core repulsion = 21848.963604 eV Total energy + Delta-G solvation = -4047.490352 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.22359 -43.43980 -39.40493 -37.99331 -36.81985 -34.84973 -33.46839 -32.59858 -31.12504 -30.69526 -29.46461 -27.25608 -26.01133 -23.88336 -23.30954 -22.71053 -22.10941 -21.01232 -19.12495 -18.81161 -18.04824 -17.38548 -17.13081 -16.55930 -16.07699 -15.83079 -15.53530 -15.33328 -14.72957 -14.61973 -14.44382 -14.41458 -14.14049 -13.83173 -13.72062 -13.12104 -12.66318 -12.42560 -12.11326 -11.89524 -11.80435 -11.54061 -11.42922 -11.28004 -11.03513 -10.97514 -10.91702 -10.58393 -10.33393 -10.17435 -9.79193 -8.96533 -8.94784 -8.27851 -7.73099 -7.44577 -6.30604 -4.76450 0.33951 0.73722 1.85109 2.12996 3.08952 3.14332 3.15254 3.16023 3.25469 3.82468 3.98622 4.09707 4.34651 4.40954 4.44822 4.56456 4.76335 4.88613 4.97589 5.12146 5.25084 5.31904 5.42217 5.51501 5.59730 5.65595 5.69666 5.70944 5.78519 5.83707 5.92052 6.21913 6.25743 6.30814 6.46853 6.50694 6.74957 7.34030 7.38467 7.48359 7.96545 8.19257 8.91155 9.26357 10.44611 10.63259 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.002640 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.590360 B =10605.499501 C =10942.838503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.561 3.439 10 O -0.574 6.574 11 N -0.647 5.647 12 C 0.123 3.877 13 C 0.059 3.941 14 N -0.436 5.436 15 C 0.455 3.545 16 N -0.521 5.521 17 C 0.080 3.920 18 C -0.113 4.113 19 C 0.107 3.893 20 F -0.133 7.133 21 C -0.144 4.144 22 C -0.050 4.050 23 C -0.014 4.014 24 O -0.212 6.212 25 C 0.041 3.959 26 C 0.128 3.872 27 H 0.271 0.729 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.448 -15.518 3.931 21.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.091 0.909 9 C 0.367 3.633 10 O -0.456 6.456 11 N -0.386 5.386 12 C -0.001 4.001 13 C -0.067 4.067 14 N -0.162 5.162 15 C 0.155 3.845 16 N -0.258 5.258 17 C -0.034 4.034 18 C -0.133 4.133 19 C 0.086 3.914 20 F -0.112 7.112 21 C -0.163 4.163 22 C -0.069 4.069 23 C -0.065 4.065 24 O -0.103 6.103 25 C -0.085 4.085 26 C 0.003 3.997 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.937 -15.479 3.704 20.511 hybrid contribution 1.260 0.685 0.484 1.513 sum 14.197 -14.795 4.187 20.927 Atomic orbital electron populations 1.69979 1.07106 1.27674 1.34747 1.25720 0.94636 1.00350 0.92492 0.86432 0.79869 0.81002 0.79501 1.19168 1.20487 1.19218 1.20883 0.93468 0.89164 1.54722 0.90925 1.18270 0.86811 0.82028 0.76190 1.90607 1.14619 1.85728 1.54620 1.48392 1.07441 1.05425 1.77381 1.21332 0.97151 0.84289 0.97352 1.22765 0.82121 1.02347 0.99419 1.58327 1.04424 1.07526 1.45887 1.23743 0.78483 0.94564 0.87731 1.71346 1.30166 1.13705 1.10612 1.19368 0.89232 0.97494 0.97284 1.20031 0.98434 0.96612 0.98267 1.17210 0.94258 0.91076 0.88815 1.91527 1.97114 1.64189 1.58328 1.20858 0.98238 1.00409 0.96822 1.19625 0.94936 0.94734 0.97577 1.20119 0.97738 0.95341 0.93322 1.84467 1.27208 1.48721 1.49904 1.22943 0.98699 0.84878 1.02028 1.21558 0.82766 0.99417 0.95971 0.91842 0.92566 0.88204 0.88609 0.91862 0.83482 0.83140 0.83710 0.92018 0.89060 0.92355 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.16 11.86 55.55 0.66 -21.50 16 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 3 Si 0.91 19.17 29.56 -169.99 -5.02 14.14 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.55 -14.42 8.85 -35.63 -0.32 -14.73 16 8 H 0.07 1.71 5.73 -52.49 -0.30 1.41 16 9 C 0.56 15.10 7.61 -12.99 -0.10 15.01 16 10 O -0.57 -17.79 14.55 5.20 0.08 -17.71 16 11 N -0.65 -13.74 3.01 -174.13 -0.52 -14.26 16 12 C 0.12 2.26 6.58 -3.60 -0.02 2.24 16 13 C 0.06 0.94 4.99 -3.70 -0.02 0.92 16 14 N -0.44 -6.59 4.67 -175.23 -0.82 -7.41 16 15 C 0.45 6.84 7.41 -87.63 -0.65 6.19 16 16 N -0.52 -8.06 10.18 -12.13 -0.12 -8.18 16 17 C 0.08 1.09 7.23 -84.70 -0.61 0.48 16 18 C -0.11 -1.28 10.07 -39.19 -0.39 -1.68 16 19 C 0.11 1.05 7.29 -39.46 -0.29 0.76 16 20 F -0.13 -1.32 17.26 2.25 0.04 -1.28 16 21 C -0.14 -1.15 10.01 -39.44 -0.39 -1.55 16 22 C -0.05 -0.44 10.05 -39.55 -0.40 -0.84 16 23 C -0.01 -0.18 7.42 -38.71 -0.29 -0.46 16 24 O -0.21 -2.96 10.47 2.36 0.02 -2.94 16 25 C 0.04 0.59 5.54 -3.70 -0.02 0.57 16 26 C 0.13 2.15 6.52 -3.61 -0.02 2.13 16 27 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 2.02 7.09 -51.93 -0.37 1.65 16 30 H 0.10 1.40 7.80 -51.93 -0.40 0.99 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 33 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.11 7.84 -51.93 -0.41 0.70 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 1.87 5.38 -51.93 -0.28 1.59 16 LS Contribution 326.81 15.07 4.92 4.92 Total: -1.00 -33.06 326.81 -8.24 -41.30 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.85 Total: 1.62 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: -3.62 Total: 11.28 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.81 Total: -51.35 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.10 Total: -20.65 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.06 -8.24 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577191311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.493 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds