Wall clock time and date at job start Tue Mar 31 2020 12:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 119.99786 * 2 1 4 4 H 1.48502 * 109.46828 * 239.99811 * 3 2 1 5 5 H 1.48493 * 109.47204 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46897 * 120.00139 * 3 2 1 7 7 C 1.40051 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00109 * 359.97438 * 7 2 1 10 10 O 1.21690 * 119.99891 * 351.79366 * 9 7 2 11 11 N 1.34772 * 120.00181 * 171.78534 * 9 7 2 12 12 C 1.47078 * 120.88302 * 175.14331 * 11 9 7 13 13 C 1.53243 * 108.51989 * 231.16407 * 12 11 9 14 14 N 1.46901 * 109.34153 * 306.17155 * 13 12 11 15 15 C 1.37658 * 110.99665 * 187.25528 * 14 13 12 16 16 N 1.30861 * 124.96324 * 0.71078 * 15 14 13 17 17 C 1.36142 * 108.69888 * 180.09585 * 16 15 14 18 18 C 1.39552 * 133.63956 * 179.21655 * 17 16 15 19 19 C 1.37962 * 119.71335 * 179.97438 * 18 17 16 20 20 F 1.35102 * 119.83578 * 179.97438 * 19 18 17 21 21 C 1.38844 * 120.33675 * 359.97438 * 19 18 17 22 22 C 1.38021 * 120.43328 * 0.02562 * 21 19 18 23 23 C 1.38533 * 119.93261 * 0.28065 * 22 21 19 24 24 O 1.34453 * 124.95489 * 179.97438 * 15 14 13 25 25 C 1.46900 * 111.27024 * 63.10198 * 14 13 12 26 26 C 1.47081 * 120.88230 * 355.12363 * 11 9 7 27 27 H 0.97001 * 120.00284 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.62849 * 111.45924 * 12 11 9 29 29 H 1.08991 * 109.62895 * 350.87223 * 12 11 9 30 30 H 1.09005 * 109.49286 * 186.20770 * 13 12 11 31 31 H 1.08997 * 109.51594 * 66.14457 * 13 12 11 32 32 H 1.08006 * 120.14499 * 0.02562 * 18 17 16 33 33 H 1.07997 * 119.78503 * 180.02562 * 21 19 18 34 34 H 1.07994 * 120.03063 * 180.02562 * 22 21 19 35 35 H 1.09005 * 109.48840 * 56.85558 * 25 14 13 36 36 H 1.08991 * 109.49183 * 176.93573 * 25 14 13 37 37 H 1.08998 * 109.63271 * 248.54669 * 26 11 9 38 38 H 1.09007 * 109.62837 * 8.92389 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6964 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0676 -2.4858 0.1526 11 7 1.9385 -3.6418 -0.1646 12 6 1.2398 -4.9319 -0.0612 13 6 2.0127 -5.8273 0.9130 14 7 3.4157 -5.9132 0.4864 15 6 4.1053 -6.8351 1.2411 16 7 3.5868 -7.5553 2.2029 17 6 4.5598 -8.3514 2.7252 18 6 4.5846 -9.2916 3.7562 19 6 5.7597 -9.9512 4.0520 20 9 5.7867 -10.8615 5.0500 21 6 6.9148 -9.6842 3.3294 22 6 6.9016 -8.7563 2.3077 23 6 5.7312 -8.0809 2.0024 24 8 5.4065 -7.1371 1.0885 25 6 4.0690 -4.5984 0.5351 26 6 3.3804 -3.6527 -0.4546 27 1 -0.4850 0.8400 -0.0004 28 1 1.2002 -5.4064 -1.0417 29 1 0.2286 -4.7716 0.3124 30 1 1.5723 -6.8244 0.9181 31 1 1.9628 -5.4027 1.9157 32 1 3.6876 -9.5026 4.3195 33 1 7.8297 -10.2060 3.5683 34 1 7.8037 -8.5541 1.7496 35 1 3.9904 -4.1904 1.5429 36 1 5.1199 -4.7042 0.2660 37 1 3.5465 -4.0042 -1.4729 38 1 3.7837 -2.6460 -0.3445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577191311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:00 Heat of formation + Delta-G solvation = -34.091971 kcal Electronic energy + Delta-G solvation = -25897.506885 eV Core-core repulsion = 21848.963604 eV Total energy + Delta-G solvation = -4048.543280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.112 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.00983 -44.43114 -40.79381 -39.07063 -38.39458 -36.04032 -35.00701 -34.58541 -32.45777 -31.59935 -30.51840 -28.87356 -27.65750 -25.15156 -24.31916 -23.75964 -23.23131 -22.46542 -20.73747 -19.74749 -19.17783 -18.54595 -18.21742 -17.97137 -17.56428 -16.88087 -16.64000 -16.49251 -16.21063 -15.93379 -15.85739 -15.64709 -15.35458 -15.21491 -14.47291 -14.41518 -13.96079 -13.62760 -13.52445 -13.34110 -13.16461 -12.95217 -12.73243 -12.65944 -12.57549 -12.41413 -12.36960 -12.03079 -11.99028 -11.58529 -10.92914 -10.87148 -9.82559 -9.79284 -9.32410 -9.17233 -8.29528 -6.84182 -0.53138 -0.09942 0.80448 1.14803 1.42503 1.45138 1.56784 2.18660 2.25057 2.35864 2.45753 2.72459 2.93279 3.26425 3.43535 3.55704 3.79073 3.79873 3.83240 3.89622 4.12813 4.14014 4.19173 4.25096 4.28089 4.50147 4.59977 4.73167 4.84258 4.85949 4.88398 4.94285 4.98726 5.03535 5.16861 5.39227 5.55061 5.59255 5.69237 6.09077 6.31745 6.43682 6.88158 7.36368 8.43951 8.66313 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026927 B = 0.002640 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.590360 B =10605.499501 C =10942.838503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.029 3.971 3 Si 0.994 3.006 4 H -0.249 1.249 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.567 4.567 8 H 0.099 0.901 9 C 0.544 3.456 10 O -0.630 6.630 11 N -0.651 5.651 12 C 0.125 3.875 13 C 0.078 3.922 14 N -0.436 5.436 15 C 0.442 3.558 16 N -0.540 5.540 17 C 0.046 3.954 18 C -0.124 4.124 19 C 0.108 3.892 20 F -0.132 7.132 21 C -0.121 4.121 22 C -0.042 4.042 23 C -0.026 4.026 24 O -0.213 6.213 25 C 0.050 3.950 26 C 0.126 3.874 27 H 0.274 0.726 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.148 0.852 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.663 -16.410 3.987 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.814 3.186 4 H -0.173 1.173 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.603 4.603 8 H 0.117 0.883 9 C 0.351 3.649 10 O -0.517 6.517 11 N -0.388 5.388 12 C 0.001 3.999 13 C -0.048 4.048 14 N -0.161 5.161 15 C 0.141 3.859 16 N -0.279 5.279 17 C -0.067 4.067 18 C -0.145 4.145 19 C 0.088 3.912 20 F -0.111 7.111 21 C -0.140 4.140 22 C -0.060 4.060 23 C -0.077 4.077 24 O -0.103 6.103 25 C -0.076 4.076 26 C 0.003 3.997 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.165 0.835 33 H 0.208 0.792 34 H 0.198 0.802 35 H 0.068 0.932 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.226 -16.443 3.762 24.110 hybrid contribution 0.042 0.726 0.562 0.919 sum 17.268 -15.718 4.324 23.747 Atomic orbital electron populations 1.70169 1.09624 1.29048 1.36513 1.26982 0.95444 1.04975 0.91170 0.85112 0.78238 0.74823 0.80445 1.17309 1.20432 1.17905 1.21449 0.94937 0.89468 1.54478 0.88290 1.18669 0.86434 0.83970 0.75869 1.90556 1.16973 1.87093 1.57042 1.48226 1.09391 1.04939 1.76218 1.21352 0.96136 0.83669 0.98713 1.22434 0.83024 1.01963 0.97416 1.58274 1.03757 1.07784 1.46288 1.23508 0.79186 0.94895 0.88288 1.71237 1.31550 1.14152 1.10944 1.19593 0.89569 0.98765 0.98792 1.20151 0.99480 0.96749 0.98104 1.17359 0.94423 0.90632 0.88818 1.91537 1.97102 1.64087 1.58362 1.21331 0.98737 0.99000 0.94927 1.20118 0.94818 0.93559 0.97501 1.20638 0.98582 0.95469 0.93004 1.84430 1.26342 1.49195 1.50339 1.22855 0.99959 0.84171 1.00616 1.21735 0.80059 1.00232 0.97673 0.91607 0.90979 0.90912 0.87404 0.93669 0.83457 0.79167 0.80191 0.93205 0.85862 0.90491 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.47 11.86 21.84 0.26 -49.21 16 2 C 0.03 1.58 5.50 85.31 0.47 2.05 16 3 Si 0.99 39.19 29.56 68.60 2.03 41.22 16 4 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.57 -30.38 8.85 24.83 0.22 -30.16 16 8 H 0.10 4.58 5.73 -2.91 -0.02 4.56 16 9 C 0.54 30.48 7.61 86.36 0.66 31.14 16 10 O -0.63 -41.37 14.55 -4.32 -0.06 -41.43 16 11 N -0.65 -28.28 3.01 -823.05 -2.48 -30.76 16 12 C 0.13 4.78 6.58 86.35 0.57 5.35 16 13 C 0.08 2.52 4.99 86.38 0.43 2.95 16 14 N -0.44 -12.89 4.67 -818.93 -3.83 -16.72 16 15 C 0.44 12.98 7.41 179.30 1.33 14.31 16 16 N -0.54 -16.76 10.18 -306.52 -3.12 -19.88 16 17 C 0.05 1.21 7.23 39.29 0.28 1.49 16 18 C -0.12 -2.71 10.07 22.52 0.23 -2.48 16 19 C 0.11 1.84 7.29 22.35 0.16 2.00 16 20 F -0.13 -2.28 17.26 44.97 0.78 -1.51 16 21 C -0.12 -1.41 10.01 22.36 0.22 -1.18 16 22 C -0.04 -0.57 10.05 22.29 0.22 -0.35 16 23 C -0.03 -0.60 7.42 22.84 0.17 -0.43 16 24 O -0.21 -5.55 10.47 -14.47 -0.15 -5.70 16 25 C 0.05 1.39 5.54 86.38 0.48 1.87 16 26 C 0.13 4.15 6.52 86.35 0.56 4.71 16 27 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 28 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.07 3.17 7.09 -2.39 -0.02 3.15 16 30 H 0.11 3.22 7.80 -2.38 -0.02 3.20 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.19 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.12 2.66 7.84 -2.39 -0.02 2.64 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.11 3.54 5.38 -2.38 -0.01 3.53 16 Total: -1.00 -76.47 326.81 0.55 -75.92 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.12 Total: 16.81 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 6.01 Total: 31.27 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -9.16 Total: -116.57 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -0.21 Total: -47.13 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.51 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -76.47 0.55 -75.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577191311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.824 kcal (2) G-P(sol) polarization free energy of solvation -76.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds