Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36671 * 125.57048 * 2 1 4 4 C 1.34446 * 109.62805 * 180.02562 * 3 2 1 5 5 C 1.41633 * 107.84590 * 359.97438 * 4 3 2 6 6 C 1.37897 * 125.56775 * 180.02562 * 2 1 3 7 7 C 1.38938 * 133.34827 * 359.93953 * 6 2 1 8 8 C 1.38095 * 120.26632 * 180.02562 * 7 6 2 9 9 C 1.38237 * 120.82252 * 359.97438 * 8 7 6 10 10 C 1.39340 * 120.24934 * 0.02562 * 9 8 7 11 11 C 1.47232 * 120.32246 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.34782 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.45210 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47083 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46866 * 179.97438 * 15 14 13 17 17 S 1.81000 * 109.47010 * 179.97438 * 16 15 14 18 18 C 1.76199 * 99.99660 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00279 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99481 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99590 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47284 * 119.99947 * 22 20 18 25 25 H 1.48500 * 109.46883 * 239.99418 * 22 20 18 26 26 H 1.08998 * 109.47028 * 89.97266 * 1 2 3 27 27 H 1.08998 * 109.47432 * 209.97744 * 1 2 3 28 28 H 1.09007 * 109.47364 * 329.97752 * 1 2 3 29 29 H 1.08005 * 125.19025 * 0.05759 * 3 2 1 30 30 H 1.08001 * 126.08110 * 179.97438 * 4 3 2 31 31 H 1.07988 * 119.86838 * 0.31434 * 7 6 2 32 32 H 1.08000 * 119.58580 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.87815 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46845 * 300.00038 * 14 13 11 35 35 H 1.08997 * 109.46829 * 59.99483 * 14 13 11 36 36 H 1.08997 * 109.46834 * 299.99832 * 15 14 13 37 37 H 1.08994 * 109.47182 * 59.99977 * 15 14 13 38 38 H 1.09000 * 109.47017 * 300.00041 * 16 15 14 39 39 H 1.09005 * 109.46716 * 59.99897 * 16 15 14 40 40 H 0.97003 * 119.99685 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2600 1.1117 0.0000 4 6 3.5528 0.7424 -0.0006 5 6 3.5998 -0.6732 -0.0003 6 6 2.2671 -1.1217 -0.0005 7 6 2.0000 -2.4852 0.0000 8 6 3.0366 -3.3975 -0.0002 9 6 4.3526 -2.9743 -0.0014 10 6 4.6524 -1.6135 -0.0019 11 6 6.0534 -1.1610 -0.0038 12 8 6.3081 0.0274 -0.0046 13 8 7.0535 -2.0646 -0.0055 14 6 8.4100 -1.5466 -0.0078 15 6 9.4010 -2.7123 -0.0089 16 6 10.8304 -2.1664 -0.0120 17 16 12.0028 -3.5454 -0.0126 18 6 13.5229 -2.6545 -0.0154 19 1 13.5159 -1.5745 -0.0167 20 6 14.7295 -3.3407 -0.0171 21 7 14.7380 -4.6569 -0.0160 22 14 16.3411 -2.3962 -0.0209 23 1 16.0602 -0.9380 -0.0221 24 1 17.1244 -2.7488 1.1905 25 1 17.1199 -2.7510 -1.2345 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 1.9041 2.1314 0.0009 30 1 4.4041 1.4070 -0.0011 31 1 0.9776 -2.8329 -0.0042 32 1 2.8164 -4.4548 -0.0003 33 1 5.1515 -3.7011 -0.0020 34 1 8.5646 -0.9369 -0.8981 35 1 8.5676 -0.9369 0.8818 36 1 9.2463 -3.3215 0.8815 37 1 9.2435 -3.3222 -0.8984 38 1 10.9848 -1.5574 -0.9027 39 1 10.9881 -1.5562 0.8773 40 1 15.5812 -5.1365 -0.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805440000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -32.925318 kcal Electronic energy + Delta-G solvation = -22453.765975 eV Core-core repulsion = 18939.193710 eV Total energy + Delta-G solvation = -3514.572266 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88656 -40.10747 -37.30170 -36.46767 -33.42956 -33.38867 -32.41913 -31.04014 -29.29856 -26.86600 -26.50855 -25.47048 -24.05601 -21.92578 -21.79625 -21.22263 -20.17255 -17.76896 -17.40815 -17.32739 -16.59067 -16.46752 -16.08272 -15.76913 -15.44775 -14.79739 -14.54900 -14.37076 -14.22808 -13.67683 -13.35100 -13.25583 -13.10419 -12.73963 -12.66123 -12.63913 -12.06690 -11.95304 -11.78090 -11.61456 -11.27042 -11.10715 -10.92181 -10.84843 -10.65077 -10.32356 -10.19378 -10.03009 -9.58994 -9.06035 -8.52802 -8.31794 -7.98835 -6.53207 -6.22494 -3.92990 0.29072 1.25016 2.35720 2.39366 2.58656 2.70065 3.22472 3.24876 3.31811 3.59004 3.68872 4.22381 4.25968 4.32658 4.52881 4.61702 4.65905 4.78504 4.91460 4.94895 5.10472 5.13666 5.20615 5.26968 5.27428 5.41047 5.48277 5.56893 5.65495 5.82820 5.84223 5.95629 6.13206 6.15897 6.22132 6.35745 6.41213 6.51040 6.58323 6.74148 6.80341 6.90327 7.61979 7.86016 8.37719 9.24102 10.85730 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.038702 B = 0.001899 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.294574 B =14742.663488 C =15434.906999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.485 5.485 3 C 0.052 3.948 4 C -0.193 4.193 5 C -0.049 4.049 6 C 0.073 3.927 7 C -0.089 4.089 8 C -0.119 4.119 9 C -0.074 4.074 10 C -0.086 4.086 11 C 0.508 3.492 12 O -0.505 6.505 13 O -0.352 6.352 14 C 0.074 3.926 15 C -0.098 4.098 16 C -0.114 4.114 17 S -0.125 6.125 18 C -0.517 4.517 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.869 5.869 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.172 0.828 30 H 0.157 0.843 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.970 7.161 0.097 32.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.167 5.167 3 C -0.074 4.074 4 C -0.217 4.217 5 C -0.054 4.054 6 C -0.033 4.033 7 C -0.109 4.109 8 C -0.139 4.139 9 C -0.093 4.093 10 C -0.088 4.088 11 C 0.353 3.647 12 O -0.395 6.395 13 O -0.269 6.269 14 C -0.001 4.001 15 C -0.136 4.136 16 C -0.263 4.263 17 S 0.104 5.896 18 C -0.666 4.666 19 H 0.092 0.908 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.189 0.811 30 H 0.174 0.826 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -32.284 6.260 0.098 32.885 hybrid contribution 1.282 2.062 -0.013 2.428 sum -31.002 8.322 0.085 32.100 Atomic orbital electron populations 1.21949 0.76737 1.04329 1.03123 1.43896 1.05884 1.04439 1.62525 1.22029 0.90201 0.91396 1.03727 1.20972 0.96460 0.93746 1.10571 1.17939 0.90842 0.93760 1.02870 1.18133 0.89585 0.88610 1.06960 1.20228 0.99814 0.89122 1.01786 1.20796 0.91631 0.99479 1.01964 1.21382 0.97397 0.94278 0.96248 1.18538 0.88494 0.93334 1.08453 1.20990 0.86274 0.84307 0.73174 1.90798 1.85170 1.17781 1.45706 1.86531 1.16695 1.39843 1.83832 1.23253 0.76607 0.97625 1.02591 1.21280 0.91483 0.96542 1.04289 1.23182 0.96411 1.03335 1.03344 1.84642 0.99115 1.09012 1.96868 1.22750 0.90723 0.94622 1.58457 0.90781 1.25019 0.99096 0.95116 0.94569 1.70029 1.27052 1.06128 1.47289 0.86097 0.81758 0.79702 0.77877 1.19578 1.20558 1.20563 0.91115 0.90032 0.89710 0.81107 0.82585 0.85909 0.84685 0.83979 0.91156 0.91161 0.90345 0.90352 0.91731 0.91734 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.08 59.85 0.66 0.94 16 2 N -0.48 -3.81 3.19 -121.80 -0.39 -4.20 16 3 C 0.05 0.43 11.33 -16.73 -0.19 0.24 16 4 C -0.19 -2.23 10.03 -39.63 -0.40 -2.62 16 5 C -0.05 -0.61 6.01 -106.60 -0.64 -1.25 16 6 C 0.07 0.73 6.82 -83.98 -0.57 0.16 16 7 C -0.09 -0.72 9.98 -39.37 -0.39 -1.12 16 8 C -0.12 -0.99 9.99 -39.63 -0.40 -1.39 16 9 C -0.07 -0.78 9.60 -39.17 -0.38 -1.16 16 10 C -0.09 -1.13 5.90 -104.73 -0.62 -1.75 16 11 C 0.51 7.74 7.89 34.38 0.27 8.01 16 12 O -0.51 -8.64 14.76 -19.29 -0.28 -8.92 16 13 O -0.35 -5.32 9.47 -40.72 -0.39 -5.71 16 14 C 0.07 1.14 5.48 37.16 0.20 1.35 16 15 C -0.10 -1.64 5.60 -26.73 -0.15 -1.79 16 16 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 17 S -0.12 -3.27 21.44 -107.50 -2.30 -5.58 16 18 C -0.52 -14.93 9.50 30.94 0.29 -14.64 16 19 H 0.07 2.08 7.80 -52.49 -0.41 1.67 16 20 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 21 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 22 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.14 8.14 -51.92 -0.42 -0.28 16 29 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 30 H 0.16 1.92 7.00 -52.49 -0.37 1.55 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.14 1.38 7.60 -52.49 -0.40 0.98 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 39 H 0.06 1.30 8.14 -51.91 -0.42 0.87 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.82 361.46 -9.78 -44.60 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.38 Total: -1.78 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -2.19 Total: -15.22 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.34 Total: -29.52 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.67 Total: -14.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -2.30 Total: -5.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.82 -9.78 -44.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805440000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.674 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds