Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36671 * 125.57048 * 2 1 4 4 C 1.34446 * 109.62805 * 180.02562 * 3 2 1 5 5 C 1.41633 * 107.84590 * 359.97438 * 4 3 2 6 6 C 1.37897 * 125.56775 * 180.02562 * 2 1 3 7 7 C 1.38938 * 133.34827 * 359.93953 * 6 2 1 8 8 C 1.38095 * 120.26632 * 180.02562 * 7 6 2 9 9 C 1.38237 * 120.82252 * 359.97438 * 8 7 6 10 10 C 1.39340 * 120.24934 * 0.02562 * 9 8 7 11 11 C 1.47232 * 120.32246 * 180.02562 * 10 9 8 12 12 O 1.21531 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.34782 * 119.99927 * 0.02562 * 11 10 9 14 14 C 1.45210 * 117.00074 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47083 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.46866 * 179.97438 * 15 14 13 17 17 S 1.81000 * 109.47010 * 179.97438 * 16 15 14 18 18 C 1.76199 * 99.99660 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00279 * 359.97438 * 18 17 16 20 20 C 1.38804 * 119.99481 * 180.02562 * 18 17 16 21 21 N 1.31626 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99590 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47200 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47284 * 119.99947 * 22 20 18 25 25 H 1.48500 * 109.46883 * 239.99418 * 22 20 18 26 26 H 1.08998 * 109.47028 * 89.97266 * 1 2 3 27 27 H 1.08998 * 109.47432 * 209.97744 * 1 2 3 28 28 H 1.09007 * 109.47364 * 329.97752 * 1 2 3 29 29 H 1.08005 * 125.19025 * 0.05759 * 3 2 1 30 30 H 1.08001 * 126.08110 * 179.97438 * 4 3 2 31 31 H 1.07988 * 119.86838 * 0.31434 * 7 6 2 32 32 H 1.08000 * 119.58580 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.87815 * 180.02562 * 9 8 7 34 34 H 1.09000 * 109.46845 * 300.00038 * 14 13 11 35 35 H 1.08997 * 109.46829 * 59.99483 * 14 13 11 36 36 H 1.08997 * 109.46834 * 299.99832 * 15 14 13 37 37 H 1.08994 * 109.47182 * 59.99977 * 15 14 13 38 38 H 1.09000 * 109.47017 * 300.00041 * 16 15 14 39 39 H 1.09005 * 109.46716 * 59.99897 * 16 15 14 40 40 H 0.97003 * 119.99685 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2600 1.1117 0.0000 4 6 3.5528 0.7424 -0.0006 5 6 3.5998 -0.6732 -0.0003 6 6 2.2671 -1.1217 -0.0005 7 6 2.0000 -2.4852 0.0000 8 6 3.0366 -3.3975 -0.0002 9 6 4.3526 -2.9743 -0.0014 10 6 4.6524 -1.6135 -0.0019 11 6 6.0534 -1.1610 -0.0038 12 8 6.3081 0.0274 -0.0046 13 8 7.0535 -2.0646 -0.0055 14 6 8.4100 -1.5466 -0.0078 15 6 9.4010 -2.7123 -0.0089 16 6 10.8304 -2.1664 -0.0120 17 16 12.0028 -3.5454 -0.0126 18 6 13.5229 -2.6545 -0.0154 19 1 13.5159 -1.5745 -0.0167 20 6 14.7295 -3.3407 -0.0171 21 7 14.7380 -4.6569 -0.0160 22 14 16.3411 -2.3962 -0.0209 23 1 16.0602 -0.9380 -0.0221 24 1 17.1244 -2.7488 1.1905 25 1 17.1199 -2.7510 -1.2345 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3634 0.8898 0.5142 29 1 1.9041 2.1314 0.0009 30 1 4.4041 1.4070 -0.0011 31 1 0.9776 -2.8329 -0.0042 32 1 2.8164 -4.4548 -0.0003 33 1 5.1515 -3.7011 -0.0020 34 1 8.5646 -0.9369 -0.8981 35 1 8.5676 -0.9369 0.8818 36 1 9.2463 -3.3215 0.8815 37 1 9.2435 -3.3222 -0.8984 38 1 10.9848 -1.5574 -0.9027 39 1 10.9881 -1.5562 0.8773 40 1 15.5812 -5.1365 -0.0176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805440000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -51.594303 kcal Electronic energy + Delta-G solvation = -22454.575523 eV Core-core repulsion = 18939.193710 eV Total energy + Delta-G solvation = -3515.381814 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58946 -41.25016 -38.08458 -37.63219 -34.90059 -34.58497 -34.00762 -31.77666 -30.00358 -28.23413 -27.50696 -27.13589 -25.02247 -22.90011 -22.56094 -22.50409 -21.05168 -19.57521 -18.61191 -18.21931 -17.71441 -17.42689 -16.97597 -16.90419 -16.33623 -16.18444 -16.00874 -15.91070 -15.02071 -14.90547 -14.37164 -14.23416 -13.98674 -13.80351 -13.70586 -13.66588 -13.17621 -13.13267 -12.96310 -12.68835 -12.60647 -12.58294 -12.39627 -12.37128 -12.23185 -11.62598 -11.52151 -11.32623 -11.16240 -10.76896 -10.36600 -9.22875 -8.69423 -8.68224 -8.38558 -6.14992 -0.52645 0.53633 1.26833 1.38492 1.42210 1.44025 1.52981 1.79632 1.80869 1.91883 2.26578 2.87157 2.95926 3.27958 3.54915 3.83852 3.85884 3.91204 3.94963 3.98723 4.12601 4.18464 4.21991 4.31617 4.39648 4.49317 4.53953 4.63758 4.67701 4.76254 4.82160 4.95605 5.00942 5.06623 5.11359 5.35266 5.39972 5.42766 5.43599 5.67294 5.70374 6.11027 6.17750 6.34738 6.70364 7.03983 8.71103 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.038702 B = 0.001899 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.294574 B =14742.663488 C =15434.906999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.479 5.479 3 C 0.080 3.920 4 C -0.244 4.244 5 C -0.076 4.076 6 C 0.055 3.945 7 C -0.070 4.070 8 C -0.125 4.125 9 C -0.071 4.071 10 C -0.128 4.128 11 C 0.505 3.495 12 O -0.535 6.535 13 O -0.353 6.353 14 C 0.081 3.919 15 C -0.084 4.084 16 C -0.092 4.092 17 S -0.182 6.182 18 C -0.542 4.542 19 H 0.073 0.927 20 C 0.016 3.984 21 N -0.906 5.906 22 Si 0.995 3.005 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.271 1.271 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.210 0.790 30 H 0.133 0.867 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.144 0.856 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.717 7.553 0.123 35.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.160 5.160 3 C -0.048 4.048 4 C -0.269 4.269 5 C -0.082 4.082 6 C -0.051 4.051 7 C -0.090 4.090 8 C -0.144 4.144 9 C -0.090 4.090 10 C -0.130 4.130 11 C 0.352 3.648 12 O -0.427 6.427 13 O -0.269 6.269 14 C 0.006 3.994 15 C -0.122 4.122 16 C -0.241 4.241 17 S 0.047 5.953 18 C -0.689 4.689 19 H 0.092 0.908 20 C -0.189 4.189 21 N -0.542 5.542 22 Si 0.817 3.183 23 H -0.188 1.188 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.227 0.773 30 H 0.151 0.849 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.162 0.838 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -35.070 6.628 0.124 35.691 hybrid contribution 1.907 1.961 -0.023 2.736 sum -33.163 8.589 0.101 34.257 Atomic orbital electron populations 1.22334 0.73688 1.06262 1.04593 1.44249 1.07557 1.03473 1.60716 1.22510 0.89139 0.93059 1.00069 1.20951 0.97610 0.93647 1.14677 1.18266 0.92145 0.94263 1.03503 1.18408 0.88947 0.90043 1.07698 1.20698 1.01619 0.88090 0.98546 1.21172 0.90465 1.01285 1.01431 1.21574 0.98955 0.93221 0.95239 1.18602 0.87159 0.94791 1.12473 1.21553 0.87058 0.83950 0.72238 1.90768 1.85567 1.18832 1.47528 1.86517 1.16461 1.39943 1.84010 1.23031 0.76867 0.96718 1.02788 1.21093 0.89684 0.96898 1.04556 1.23069 0.96527 1.00866 1.03630 1.84601 1.00644 1.13029 1.97051 1.23099 0.92008 0.94833 1.58991 0.90847 1.26064 1.03027 0.96120 0.93695 1.70150 1.28349 1.07846 1.47885 0.84953 0.76628 0.78350 0.78348 1.18805 1.19581 1.19593 0.89788 0.88546 0.87516 0.77345 0.84881 0.82076 0.81388 0.83778 0.91025 0.91028 0.90099 0.90108 0.91385 0.91390 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.20 11.08 127.77 1.42 1.61 16 2 N -0.48 -6.26 3.19 -539.27 -1.72 -7.98 16 3 C 0.08 1.21 11.33 83.07 0.94 2.15 16 4 C -0.24 -5.91 10.03 22.24 0.22 -5.69 16 5 C -0.08 -1.97 6.01 -21.15 -0.13 -2.09 16 6 C 0.06 1.02 6.82 38.94 0.27 1.29 16 7 C -0.07 -0.92 9.98 22.40 0.22 -0.69 16 8 C -0.12 -1.77 9.99 22.24 0.22 -1.55 16 9 C -0.07 -1.49 9.60 22.54 0.22 -1.27 16 10 C -0.13 -3.53 5.90 -19.93 -0.12 -3.64 16 11 C 0.50 16.36 7.89 70.19 0.55 16.92 16 12 O -0.54 -19.72 14.76 19.73 0.29 -19.43 16 13 O -0.35 -11.05 9.47 -56.93 -0.54 -11.59 16 14 C 0.08 2.56 5.48 71.98 0.39 2.95 16 15 C -0.08 -2.85 5.60 30.60 0.17 -2.68 16 16 C -0.09 -3.80 5.67 71.98 0.41 -3.39 16 17 S -0.18 -9.79 21.44 -56.49 -1.21 -11.00 16 18 C -0.54 -31.71 9.50 67.96 0.65 -31.07 16 19 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 20 C 0.02 0.92 5.49 84.86 0.47 1.39 16 21 N -0.91 -54.97 13.22 21.65 0.29 -54.69 16 22 Si 1.00 44.51 29.55 68.60 2.03 46.54 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 28 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 29 H 0.21 1.30 8.06 -2.91 -0.02 1.28 16 30 H 0.13 3.69 7.00 -2.91 -0.02 3.67 16 31 H 0.16 0.84 8.06 -2.92 -0.02 0.82 16 32 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 33 H 0.14 2.81 7.60 -2.91 -0.02 2.79 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -78.93 361.46 6.07 -72.86 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.04 Total: 11.07 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 5.90 Total: -25.78 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -1.44 Total: -62.67 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.25 Total: -31.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -9.79 SS G_CDS: -1.21 Total: -11.00 kcal Total: -78.93 6.07 -72.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805440000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.266 kcal (2) G-P(sol) polarization free energy of solvation -78.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds