Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36551 * 125.07005 * 2 1 4 4 C 1.34476 * 109.97827 * 180.02562 * 3 2 1 5 5 C 1.46246 * 107.03471 * 0.02562 * 4 3 2 6 6 C 1.39933 * 133.83274 * 180.02562 * 5 4 3 7 7 C 1.36172 * 119.96763 * 179.97438 * 6 5 4 8 8 C 1.40291 * 120.37216 * 0.02562 * 7 6 5 9 9 C 1.47445 * 119.83747 * 180.02562 * 8 7 6 10 10 O 1.21508 * 120.00056 * 179.97438 * 9 8 7 11 11 O 1.34761 * 119.99809 * 0.02562 * 9 8 7 12 12 C 1.45198 * 117.00077 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47366 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47369 * 179.97438 * 13 12 11 15 15 S 1.81003 * 109.47373 * 179.97438 * 14 13 12 16 16 C 1.76199 * 99.99991 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00322 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99867 * 180.02562 * 16 15 14 19 19 N 1.31631 * 119.99917 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47406 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47165 * 120.00180 * 20 18 16 23 23 H 1.48504 * 109.46892 * 240.00109 * 20 18 16 24 24 C 1.39344 * 120.32522 * 359.97438 * 8 7 6 25 25 C 1.37837 * 125.07090 * 179.70466 * 2 1 3 26 26 H 1.09002 * 109.47391 * 90.01942 * 1 2 3 27 27 H 1.09001 * 109.46813 * 330.01998 * 1 2 3 28 28 H 1.09004 * 109.47041 * 210.02125 * 1 2 3 29 29 H 1.07994 * 125.01248 * 0.02562 * 3 2 1 30 30 H 1.07997 * 126.48392 * 179.97438 * 4 3 2 31 31 H 1.08004 * 120.01037 * 359.95450 * 6 5 4 32 32 H 1.07996 * 119.80963 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46994 * 299.99908 * 12 11 9 34 34 H 1.09003 * 109.46990 * 59.99704 * 12 11 9 35 35 H 1.09002 * 109.47232 * 300.00060 * 13 12 11 36 36 H 1.09003 * 109.47065 * 60.00048 * 13 12 11 37 37 H 1.09002 * 109.47072 * 300.00256 * 14 13 12 38 38 H 1.09003 * 109.46909 * 60.00049 * 14 13 12 39 39 H 0.97005 * 119.99951 * 179.97438 * 19 18 16 40 40 H 1.08006 * 120.16640 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.1176 0.0000 4 6 3.5480 0.7675 -0.0006 5 6 3.5975 -0.6941 -0.0016 6 6 4.6393 -1.6285 -0.0020 7 6 4.3579 -2.9608 -0.0025 8 6 3.0271 -3.4048 -0.0031 9 6 2.7360 -4.8502 -0.0030 10 8 1.5845 -5.2381 -0.0030 11 8 3.7471 -5.7412 -0.0019 12 6 3.3864 -7.1476 -0.0013 13 6 4.6569 -8.0000 -0.0007 14 6 4.2768 -9.4820 0.0006 15 16 5.7799 -10.4905 0.0006 16 6 5.0672 -12.1019 0.0029 17 1 3.9935 -12.2175 0.0034 18 6 5.8858 -13.2228 0.0040 19 7 7.1946 -13.0819 0.0039 20 14 5.1303 -14.9312 0.0057 21 1 3.6497 -14.8177 0.0062 22 1 5.5704 -15.6682 -1.2060 23 1 5.5703 -15.6657 1.2190 24 6 1.9791 -2.4865 -0.0026 25 6 2.2570 -1.1281 0.0058 26 1 -0.3634 -0.0003 -1.0277 27 1 -0.3633 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.8817 2.1329 0.0004 30 1 4.3940 1.4387 -0.0011 31 1 5.6658 -1.2929 -0.0023 32 1 5.1639 -3.6797 -0.0024 33 1 2.7978 -7.3714 0.8885 34 1 2.7989 -7.3724 -0.8915 35 1 5.2451 -7.7762 -0.8906 36 1 5.2447 -7.7754 0.8894 37 1 3.6888 -9.7056 0.8908 38 1 3.6888 -9.7070 -0.8892 39 1 7.7667 -13.8653 0.0051 40 1 0.9555 -2.8312 -0.0035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869806330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -53.607717 kcal Electronic energy + Delta-G solvation = -22211.017334 eV Core-core repulsion = 18695.548213 eV Total energy + Delta-G solvation = -3515.469122 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38900 -41.41417 -38.26959 -37.57271 -34.90793 -34.58426 -33.87893 -31.45382 -30.62219 -28.18367 -27.45067 -27.16952 -24.91642 -23.19662 -22.73994 -21.85111 -21.21452 -19.58808 -18.89328 -18.03488 -17.76533 -17.75029 -16.91325 -16.90237 -16.32962 -16.27209 -15.95602 -15.47231 -15.08586 -14.95290 -14.55846 -14.25060 -14.11870 -13.94434 -13.79250 -13.73758 -13.23739 -13.14316 -12.96576 -12.84951 -12.61663 -12.42506 -12.42070 -12.25537 -12.08045 -11.75714 -11.53439 -11.45114 -11.16188 -10.76100 -10.36036 -9.32846 -8.68078 -8.67275 -8.38452 -6.14876 -0.47267 0.41196 1.24566 1.33013 1.38532 1.38820 1.51355 1.75734 1.84821 1.97247 2.26711 2.82726 2.96089 3.27769 3.52366 3.67496 3.83796 3.84258 3.93636 3.97199 4.06615 4.14078 4.22501 4.32009 4.39733 4.42374 4.49364 4.63005 4.67648 4.70458 4.71560 4.94634 4.99687 5.01373 5.08747 5.26801 5.32723 5.40082 5.47585 5.67425 5.72657 6.09130 6.17816 6.33231 6.61061 7.04141 8.71171 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.001793 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.401279 B =15616.586099 C =16259.930474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.487 5.487 3 C 0.078 3.922 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.086 4.086 7 C -0.099 4.099 8 C -0.132 4.132 9 C 0.512 3.488 10 O -0.541 6.541 11 O -0.349 6.349 12 C 0.080 3.920 13 C -0.085 4.085 14 C -0.092 4.092 15 S -0.183 6.183 16 C -0.541 4.541 17 H 0.074 0.926 18 C 0.016 3.984 19 N -0.906 5.906 20 Si 0.995 3.005 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.055 4.055 25 C 0.054 3.946 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.078 0.922 29 H 0.213 0.787 30 H 0.171 0.829 31 H 0.155 0.845 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.272 0.728 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 33.025 0.068 35.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.169 5.169 3 C -0.049 4.049 4 C -0.253 4.253 5 C -0.097 4.097 6 C -0.104 4.104 7 C -0.119 4.119 8 C -0.134 4.134 9 C 0.359 3.641 10 O -0.433 6.433 11 O -0.265 6.265 12 C 0.005 3.995 13 C -0.124 4.124 14 C -0.241 4.241 15 S 0.045 5.955 16 C -0.689 4.689 17 H 0.092 0.908 18 C -0.189 4.189 19 N -0.543 5.543 20 Si 0.817 3.183 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.075 4.075 25 C -0.051 4.051 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.096 0.904 29 H 0.230 0.770 30 H 0.189 0.811 31 H 0.172 0.828 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.326 33.107 0.064 34.991 hybrid contribution -1.674 -1.941 -0.009 2.563 sum -13.000 31.166 0.055 33.769 Atomic orbital electron populations 1.22277 0.74956 1.05763 1.04314 1.44162 1.07386 1.03691 1.61663 1.22653 0.90070 0.92333 0.99811 1.22099 0.97657 0.91631 1.13906 1.19934 0.91959 0.95458 1.02348 1.20503 0.99579 0.90988 0.99306 1.21010 0.94791 0.96898 0.99185 1.18652 0.95333 0.87584 1.11824 1.21412 0.82755 0.88044 0.71852 1.90799 1.22922 1.81609 1.47976 1.86516 1.37942 1.18339 1.83680 1.23080 0.97839 0.75532 1.03046 1.21101 0.96361 0.90296 1.04598 1.23068 1.00572 0.96758 1.03686 1.84624 1.11506 1.02278 1.97054 1.23096 0.95240 0.91596 1.58948 0.90803 1.26063 0.95217 1.03932 0.93715 1.70153 1.04251 1.31944 1.47908 0.84954 0.78554 0.76456 0.78323 1.18765 1.19622 1.19631 1.20014 0.99058 0.89338 0.99109 1.18089 0.91430 0.88205 1.07408 0.90113 0.86739 0.90355 0.77004 0.81114 0.82768 0.83802 0.90744 0.90755 0.90101 0.90106 0.91317 0.91325 0.91887 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.02 127.77 1.41 1.80 16 2 N -0.49 -6.18 3.18 -539.40 -1.71 -7.89 16 3 C 0.08 0.69 11.28 83.10 0.94 1.62 16 4 C -0.23 -2.80 11.08 23.49 0.26 -2.54 16 5 C -0.09 -1.69 6.37 -20.13 -0.13 -1.82 16 6 C -0.09 -1.55 10.03 22.20 0.22 -1.33 16 7 C -0.10 -2.14 9.53 22.29 0.21 -1.93 16 8 C -0.13 -3.32 5.87 -20.09 -0.12 -3.44 16 9 C 0.51 15.24 7.88 70.25 0.55 15.79 16 10 O -0.54 -18.40 16.10 19.81 0.32 -18.08 16 11 O -0.35 -10.30 9.44 -56.72 -0.54 -10.83 16 12 C 0.08 2.39 5.48 71.98 0.39 2.79 16 13 C -0.09 -2.80 5.60 30.59 0.17 -2.63 16 14 C -0.09 -3.71 5.67 71.98 0.41 -3.30 16 15 S -0.18 -9.77 21.44 -56.49 -1.21 -10.98 16 16 C -0.54 -31.44 9.50 67.95 0.65 -30.79 16 17 H 0.07 4.14 7.80 -2.91 -0.02 4.12 16 18 C 0.02 0.90 5.49 84.86 0.47 1.37 16 19 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 20 Si 1.00 44.24 29.55 68.60 2.03 46.27 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 C -0.05 -1.24 9.49 22.64 0.21 -1.02 16 25 C 0.05 1.06 6.80 38.95 0.26 1.32 16 26 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.11 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.08 0.55 8.10 -2.38 -0.02 0.53 16 29 H 0.21 -0.05 8.06 -2.91 -0.02 -0.08 16 30 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.14 2.90 7.58 -2.91 -0.02 2.87 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.13 2.88 7.62 -2.91 -0.02 2.85 16 Total: -1.00 -75.42 364.05 6.13 -69.29 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.04 Total: 10.85 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.91 Total: -24.12 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -1.43 Total: -62.40 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.22 Total: -28.91 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -9.77 SS G_CDS: -1.21 Total: -10.98 kcal Total: -75.42 6.13 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869806330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.683 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds