Wall clock time and date at job start Tue Mar 31 2020 12:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48489 * 109.47351 * 269.99724 * 3 2 1 5 5 H 1.48504 * 109.47065 * 30.00222 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99457 * 3 2 1 7 7 C 1.37876 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99671 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47379 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46896 * 110.99913 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47220 * 325.00418 * 12 11 10 14 14 C 1.53000 * 109.47053 * 205.00062 * 12 11 10 15 15 C 1.50703 * 109.46801 * 65.00291 * 14 12 11 16 16 C 1.38229 * 120.00922 * 264.72032 * 15 14 12 17 17 C 1.38220 * 120.01753 * 179.77153 * 16 15 14 18 18 C 1.38271 * 120.02414 * 0.50586 * 17 16 15 19 19 C 1.38195 * 120.00778 * 359.75150 * 18 17 16 20 20 C 1.38335 * 120.00382 * 85.00136 * 15 14 12 21 21 Cl 1.73604 * 120.01556 * 359.95096 * 20 15 14 22 22 C 1.50703 * 109.46997 * 85.00438 * 12 11 10 23 23 C 1.34511 * 125.79110 * 220.00243 * 22 12 11 24 24 C 1.41379 * 106.84200 * 179.97438 * 23 22 12 25 25 C 1.34518 * 106.84125 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78817 * 39.68889 * 22 12 11 27 27 H 0.96996 * 119.99919 * 0.02562 * 1 2 3 28 28 H 1.09010 * 109.46927 * 60.00049 * 9 7 2 29 29 H 1.09000 * 109.47453 * 300.00712 * 9 7 2 30 30 H 1.09007 * 109.46416 * 60.00028 * 10 9 7 31 31 H 1.08990 * 109.47033 * 300.00725 * 10 9 7 32 32 H 1.00896 * 111.00002 * 303.96348 * 11 10 9 33 33 H 1.09002 * 109.47069 * 185.00015 * 14 12 11 34 34 H 1.08991 * 109.47625 * 305.00335 * 14 12 11 35 35 H 1.08006 * 119.99021 * 0.02562 * 16 15 14 36 36 H 1.07999 * 119.99024 * 180.23043 * 17 16 15 37 37 H 1.07987 * 119.99595 * 179.76745 * 18 17 16 38 38 H 1.08005 * 120.00198 * 180.02562 * 19 18 17 39 39 H 1.08001 * 126.57779 * 359.95567 * 23 22 12 40 40 H 1.08000 * 126.58175 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.79052 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0077 0.0027 13 1 5.3615 -4.6484 0.5924 14 6 7.4205 -4.0151 0.6123 15 6 7.3395 -3.6186 2.0640 16 6 7.5500 -2.3035 2.4343 17 6 7.4711 -1.9388 3.7651 18 6 7.1920 -2.8910 4.7281 19 6 6.9867 -4.2070 4.3597 20 6 7.0603 -4.5717 3.0269 21 17 6.8018 -6.2247 2.5634 22 6 6.0816 -4.5215 -1.4125 23 6 5.7681 -5.7670 -1.8123 24 6 5.9708 -5.8115 -3.2108 25 6 6.3956 -4.5904 -3.5821 26 8 6.4563 -3.8119 -2.4894 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6798 0.8912 29 1 3.8753 -0.6802 -0.8888 30 1 3.6587 -3.1508 -0.8876 31 1 3.6580 -3.1497 0.8923 32 1 5.8522 -2.1107 -0.7795 33 1 7.8462 -5.0153 0.5321 34 1 8.0529 -3.3069 0.0771 35 1 7.7721 -1.5601 1.6830 36 1 7.6320 -0.9105 4.0535 37 1 7.1343 -2.6062 5.7681 38 1 6.7683 -4.9506 5.1119 39 1 5.4272 -6.5775 -1.1853 40 1 5.8138 -6.6624 -3.8572 41 1 6.6422 -4.2865 -4.5887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:17 Heat of formation + Delta-G solvation = 23.996447 kcal Electronic energy + Delta-G solvation = -24079.911465 eV Core-core repulsion = 20565.763806 eV Total energy + Delta-G solvation = -3514.147659 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.52399 -39.48734 -36.82601 -36.43033 -33.78651 -32.89773 -32.32484 -30.82967 -30.60747 -28.82943 -27.41518 -24.28527 -23.04804 -22.62257 -21.70583 -21.16175 -20.40527 -19.99783 -17.58253 -17.00961 -16.77528 -15.95807 -15.72803 -15.54859 -14.98196 -14.51682 -14.37576 -13.90242 -13.78440 -13.50059 -13.28054 -13.09640 -12.77534 -12.65663 -12.48337 -12.37790 -12.14470 -11.67824 -11.56967 -11.40479 -11.36428 -11.13033 -10.99860 -10.66840 -10.11575 -9.90122 -9.86224 -9.74867 -9.22208 -8.85600 -8.68743 -8.52460 -8.34520 -8.08409 -6.02878 -4.01034 1.18407 1.32871 1.80907 2.14346 2.67960 3.01514 3.32521 3.39745 3.45147 3.67604 4.47173 4.49501 4.52604 4.79738 4.87437 4.99589 5.08247 5.12631 5.27478 5.30771 5.32071 5.34770 5.43867 5.65983 5.70041 5.83886 5.90280 5.97525 5.99371 6.12635 6.18675 6.23480 6.29290 6.42636 6.52532 6.52805 6.77090 6.84647 7.02059 7.21774 7.37356 7.56015 7.71358 7.87109 8.54752 9.01426 9.59408 11.10567 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.004958 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.659131 B = 5646.315343 C = 7733.427087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.007 4.007 10 C 0.075 3.925 11 N -0.678 5.678 12 C 0.176 3.824 13 H 0.105 0.895 14 C -0.071 4.071 15 C -0.053 4.053 16 C -0.077 4.077 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.036 4.036 21 Cl -0.077 7.077 22 C -0.031 4.031 23 C -0.208 4.208 24 C -0.214 4.214 25 C -0.045 4.045 26 O -0.172 6.172 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.008 0.992 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.343 0.657 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.493 -10.420 2.616 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.558 4.558 8 H 0.088 0.912 9 C -0.045 4.045 10 C -0.053 4.053 11 N -0.308 5.308 12 C 0.065 3.935 13 H 0.123 0.877 14 C -0.109 4.109 15 C -0.053 4.053 16 C -0.095 4.095 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.133 4.133 20 C -0.063 4.063 21 Cl -0.048 7.048 22 C -0.083 4.083 23 C -0.228 4.228 24 C -0.233 4.233 25 C -0.113 4.113 26 O -0.067 6.067 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 19.433 -10.060 3.287 22.128 hybrid contribution -0.184 0.169 -1.193 1.219 sum 19.249 -9.891 2.094 21.743 Atomic orbital electron populations 1.69916 1.06320 1.26868 1.51207 1.24994 0.94706 0.99141 0.94509 0.86763 0.80507 0.83523 0.78437 1.20432 1.21454 1.18742 1.21056 0.89363 0.94499 1.50893 0.91162 1.19517 0.96680 0.91635 0.96646 1.22003 0.83499 1.00281 0.99557 1.60716 1.10468 1.10063 1.49548 1.20281 0.96474 0.91921 0.84834 0.87700 1.20692 0.96379 1.02551 0.91302 1.19457 0.98796 0.92783 0.94297 1.20991 0.97737 0.94656 0.96099 1.21253 0.99249 0.99649 0.93119 1.21052 1.00005 0.92375 0.99811 1.20950 1.01211 0.97072 0.94029 1.20812 1.05784 0.85328 0.94343 1.98349 1.95071 1.18696 1.92702 1.23616 1.03007 0.91622 0.90063 1.21606 1.08041 0.97703 0.95454 1.21799 1.06965 0.98777 0.95741 1.23993 1.06035 0.90393 0.90843 1.83972 1.67304 1.40226 1.15243 0.92759 0.95638 0.97353 0.95858 0.91649 0.83887 0.90037 0.90164 0.84988 0.85630 0.85530 0.85383 0.83750 0.83713 0.78346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.98 27.47 -169.99 -4.67 17.32 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C -0.01 -0.17 4.30 -27.88 -0.12 -0.29 16 10 C 0.07 1.52 5.42 -3.82 -0.02 1.50 16 11 N -0.68 -11.18 5.85 -107.95 -0.63 -11.82 16 12 C 0.18 2.49 2.43 -68.87 -0.17 2.33 16 13 H 0.11 1.57 7.59 -51.93 -0.39 1.18 16 14 C -0.07 -0.86 4.52 -27.88 -0.13 -0.99 16 15 C -0.05 -0.66 4.89 -104.59 -0.51 -1.17 16 16 C -0.08 -0.94 9.55 -39.59 -0.38 -1.31 16 17 C -0.11 -1.29 10.05 -39.58 -0.40 -1.69 16 18 C -0.11 -1.22 10.05 -39.59 -0.40 -1.62 16 19 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 20 C -0.04 -0.45 6.31 -39.50 -0.25 -0.70 16 21 Cl -0.08 -0.90 27.21 -51.86 -1.41 -2.31 16 22 C -0.03 -0.44 5.87 -35.62 -0.21 -0.65 16 23 C -0.21 -2.82 10.80 -39.70 -0.43 -3.25 16 24 C -0.21 -2.60 10.91 -39.70 -0.43 -3.04 16 25 C -0.04 -0.54 12.09 29.42 0.36 -0.18 16 26 O -0.17 -2.47 10.08 5.71 0.06 -2.42 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.03 0.63 7.20 -51.92 -0.37 0.25 16 29 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 30 H 0.02 0.50 8.00 -51.93 -0.42 0.08 16 31 H 0.07 1.37 8.06 -51.93 -0.42 0.96 16 32 H 0.34 5.59 8.03 -39.29 -0.32 5.27 16 33 H 0.08 0.93 7.13 -51.93 -0.37 0.56 16 34 H 0.08 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 361.78 15.07 5.45 5.45 Total: -1.00 -32.07 361.78 -9.98 -42.04 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.64 Total: 5.39 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.90 Total: -26.21 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.14 Total: -39.26 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.06 Total: -2.42 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.41 Total: -2.31 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.07 -9.98 -42.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.038 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds