Wall clock time and date at job start Tue Mar 31 2020 12:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48489 * 109.47351 * 269.99724 * 3 2 1 5 5 H 1.48504 * 109.47065 * 30.00222 * 3 2 1 6 6 H 1.48505 * 109.47046 * 149.99457 * 3 2 1 7 7 C 1.37876 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99671 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00287 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47379 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.47317 * 179.97438 * 10 9 7 12 12 C 1.46896 * 110.99913 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47220 * 325.00418 * 12 11 10 14 14 C 1.53000 * 109.47053 * 205.00062 * 12 11 10 15 15 C 1.50703 * 109.46801 * 65.00291 * 14 12 11 16 16 C 1.38229 * 120.00922 * 264.72032 * 15 14 12 17 17 C 1.38220 * 120.01753 * 179.77153 * 16 15 14 18 18 C 1.38271 * 120.02414 * 0.50586 * 17 16 15 19 19 C 1.38195 * 120.00778 * 359.75150 * 18 17 16 20 20 C 1.38335 * 120.00382 * 85.00136 * 15 14 12 21 21 Cl 1.73604 * 120.01556 * 359.95096 * 20 15 14 22 22 C 1.50703 * 109.46997 * 85.00438 * 12 11 10 23 23 C 1.34511 * 125.79110 * 220.00243 * 22 12 11 24 24 C 1.41379 * 106.84200 * 179.97438 * 23 22 12 25 25 C 1.34518 * 106.84125 * 359.97438 * 24 23 22 26 26 O 1.34302 * 125.78817 * 39.68889 * 22 12 11 27 27 H 0.96996 * 119.99919 * 0.02562 * 1 2 3 28 28 H 1.09010 * 109.46927 * 60.00049 * 9 7 2 29 29 H 1.09000 * 109.47453 * 300.00712 * 9 7 2 30 30 H 1.09007 * 109.46416 * 60.00028 * 10 9 7 31 31 H 1.08990 * 109.47033 * 300.00725 * 10 9 7 32 32 H 1.00896 * 111.00002 * 303.96348 * 11 10 9 33 33 H 1.09002 * 109.47069 * 185.00015 * 14 12 11 34 34 H 1.08991 * 109.47625 * 305.00335 * 14 12 11 35 35 H 1.08006 * 119.99021 * 0.02562 * 16 15 14 36 36 H 1.07999 * 119.99024 * 180.23043 * 17 16 15 37 37 H 1.07987 * 119.99595 * 179.76745 * 18 17 16 38 38 H 1.08005 * 120.00198 * 180.02562 * 19 18 17 39 39 H 1.08001 * 126.57779 * 359.95567 * 23 22 12 40 40 H 1.08000 * 126.58175 * 180.02562 * 24 23 22 41 41 H 1.07998 * 125.79052 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.3999 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0077 0.0027 13 1 5.3615 -4.6484 0.5924 14 6 7.4205 -4.0151 0.6123 15 6 7.3395 -3.6186 2.0640 16 6 7.5500 -2.3035 2.4343 17 6 7.4711 -1.9388 3.7651 18 6 7.1920 -2.8910 4.7281 19 6 6.9867 -4.2070 4.3597 20 6 7.0603 -4.5717 3.0269 21 17 6.8018 -6.2247 2.5634 22 6 6.0816 -4.5215 -1.4125 23 6 5.7681 -5.7670 -1.8123 24 6 5.9708 -5.8115 -3.2108 25 6 6.3956 -4.5904 -3.5821 26 8 6.4563 -3.8119 -2.4894 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6798 0.8912 29 1 3.8753 -0.6802 -0.8888 30 1 3.6587 -3.1508 -0.8876 31 1 3.6580 -3.1497 0.8923 32 1 5.8522 -2.1107 -0.7795 33 1 7.8462 -5.0153 0.5321 34 1 8.0529 -3.3069 0.0771 35 1 7.7721 -1.5601 1.6830 36 1 7.6320 -0.9105 4.0535 37 1 7.1343 -2.6062 5.7681 38 1 6.7683 -4.9506 5.1119 39 1 5.4272 -6.5775 -1.1853 40 1 5.8138 -6.6624 -3.8572 41 1 6.6422 -4.2865 -4.5887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926132618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:16 Heat of formation + Delta-G solvation = 6.112158 kcal Electronic energy + Delta-G solvation = -24080.686986 eV Core-core repulsion = 20565.763806 eV Total energy + Delta-G solvation = -3514.923180 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.53555 -40.38289 -38.11935 -37.32918 -35.51895 -34.09755 -33.81629 -32.12389 -31.52941 -30.30115 -28.49212 -25.98892 -24.21585 -23.53707 -22.81102 -22.23593 -21.99411 -21.10538 -18.98397 -18.61927 -17.87400 -16.98979 -16.72850 -16.62609 -16.31181 -16.01028 -15.73465 -15.22549 -15.10736 -14.65261 -14.57848 -14.21135 -14.09237 -13.76283 -13.68546 -13.46380 -13.34161 -13.26301 -12.93696 -12.63569 -12.43710 -12.28710 -12.06055 -11.96686 -11.78456 -11.69751 -11.51700 -11.44171 -10.86159 -10.77240 -9.76419 -9.64482 -9.44275 -9.31811 -8.29900 -6.34789 0.29784 0.45065 0.80552 1.24145 1.36689 1.38996 1.52152 1.69632 2.02754 2.36904 2.78894 3.05785 3.20604 3.54957 3.90793 3.98103 4.07754 4.13621 4.20796 4.27746 4.31674 4.43855 4.48528 4.52518 4.55108 4.75448 4.78105 4.88811 4.92137 4.97185 5.00717 5.12541 5.18355 5.24667 5.38136 5.46887 5.56055 5.56989 5.62660 5.64916 5.94006 6.00628 6.19567 6.25607 6.42313 6.73001 7.29961 8.87014 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.004958 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.659131 B = 5646.315343 C = 7733.427087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.027 0.973 9 C 0.002 3.998 10 C 0.093 3.907 11 N -0.668 5.668 12 C 0.183 3.817 13 H 0.093 0.907 14 C -0.061 4.061 15 C -0.067 4.067 16 C -0.090 4.090 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.051 4.051 21 Cl -0.078 7.078 22 C -0.053 4.053 23 C -0.218 4.218 24 C -0.225 4.225 25 C -0.043 4.043 26 O -0.187 6.187 27 H 0.267 0.733 28 H 0.027 0.973 29 H 0.016 0.984 30 H 0.007 0.993 31 H 0.053 0.947 32 H 0.347 0.653 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.168 0.832 41 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.661 -9.504 2.512 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.036 4.036 10 C -0.036 4.036 11 N -0.298 5.298 12 C 0.072 3.928 13 H 0.111 0.889 14 C -0.099 4.099 15 C -0.068 4.068 16 C -0.108 4.108 17 C -0.140 4.140 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.077 4.077 21 Cl -0.049 7.049 22 C -0.104 4.104 23 C -0.238 4.238 24 C -0.244 4.244 25 C -0.110 4.110 26 O -0.083 6.083 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.035 0.965 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.165 0.835 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.186 0.814 41 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 21.625 -9.171 3.183 23.704 hybrid contribution -0.906 -0.238 -1.175 1.502 sum 20.719 -9.409 2.008 22.844 Atomic orbital electron populations 1.70071 1.08382 1.28234 1.52528 1.26001 0.95601 1.03565 0.93877 0.85609 0.79640 0.77916 0.79196 1.19226 1.20939 1.16647 1.21381 0.91982 0.93091 1.50791 0.95417 1.19373 0.93443 0.93978 0.96818 1.21595 0.86063 0.97649 0.98276 1.60613 1.07590 1.11881 1.49722 1.20186 0.97285 0.90091 0.85215 0.88919 1.20591 0.94940 1.03111 0.91215 1.19554 0.99641 0.93208 0.94391 1.21176 0.98115 0.94622 0.96902 1.21561 0.98741 1.00815 0.92856 1.21399 0.98906 0.91942 1.01085 1.21237 1.00957 0.97940 0.93995 1.21004 1.06339 0.85417 0.94955 1.98343 1.95110 1.18700 1.92760 1.23552 1.04610 0.92132 0.90154 1.21888 1.07567 0.97728 0.96590 1.22142 1.07045 0.99892 0.95336 1.24798 1.04602 0.90119 0.91520 1.83956 1.67654 1.40927 1.15789 0.92444 0.95419 0.96527 0.97449 0.92806 0.83454 0.89474 0.89440 0.84526 0.83751 0.83043 0.83964 0.83185 0.81443 0.74756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 44.71 27.47 68.60 1.88 46.59 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 7 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 9 C 0.00 0.08 4.30 29.85 0.13 0.21 16 10 C 0.09 3.84 5.42 86.30 0.47 4.31 16 11 N -0.67 -21.62 5.85 -495.45 -2.90 -24.52 16 12 C 0.18 5.13 2.43 44.17 0.11 5.24 16 13 H 0.09 2.82 7.59 -2.39 -0.02 2.81 16 14 C -0.06 -1.43 4.52 29.85 0.13 -1.29 16 15 C -0.07 -1.63 4.89 -19.84 -0.10 -1.73 16 16 C -0.09 -2.08 9.55 22.26 0.21 -1.86 16 17 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 18 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 19 C -0.12 -2.62 9.83 22.29 0.22 -2.40 16 20 C -0.05 -1.22 6.31 22.33 0.14 -1.07 16 21 Cl -0.08 -1.78 27.21 -2.72 -0.07 -1.86 16 22 C -0.05 -1.49 5.87 24.83 0.15 -1.34 16 23 C -0.22 -5.78 10.80 22.19 0.24 -5.54 16 24 C -0.23 -5.12 10.91 22.19 0.24 -4.88 16 25 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 26 O -0.19 -5.15 10.08 -2.48 -0.02 -5.18 16 27 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.03 1.31 7.20 -2.38 -0.02 1.30 16 29 H 0.02 0.76 7.57 -2.39 -0.02 0.75 16 30 H 0.01 0.32 8.00 -2.38 -0.02 0.30 16 31 H 0.05 2.32 8.06 -2.39 -0.02 2.30 16 32 H 0.35 10.90 8.03 -89.70 -0.72 10.18 16 33 H 0.09 1.94 7.13 -2.39 -0.02 1.92 16 34 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 35 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.15 2.09 8.06 -2.92 -0.02 2.07 16 38 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 40 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16 41 H 0.24 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -69.91 361.78 3.35 -66.55 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.26 Total: 24.00 kcal Atomic # 6 Polarization: -49.20 SS G_CDS: 3.91 Total: -45.29 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.60 Total: -84.83 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.02 Total: -5.18 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.86 kcal Total: -69.91 3.35 -66.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.664 kcal (2) G-P(sol) polarization free energy of solvation -69.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds