Wall clock time and date at job start Tue Mar 31 2020 12:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00298 * 2 1 4 4 H 1.48499 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46793 * 299.99653 * 3 2 1 6 6 H 1.48502 * 109.47341 * 59.99533 * 3 2 1 7 7 C 1.37874 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00291 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47239 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46529 * 180.02562 * 10 9 7 12 12 C 1.46905 * 110.99415 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47325 * 324.99835 * 12 11 10 14 14 C 1.53001 * 109.46888 * 204.99785 * 12 11 10 15 15 C 1.50705 * 109.47093 * 65.00277 * 14 12 11 16 16 C 1.38233 * 120.00468 * 264.72271 * 15 14 12 17 17 C 1.38225 * 120.01200 * 179.76972 * 16 15 14 18 18 C 1.38264 * 120.02428 * 0.50513 * 17 16 15 19 19 C 1.38189 * 120.01294 * 359.74826 * 18 17 16 20 20 C 1.38325 * 120.00717 * 84.99739 * 15 14 12 21 21 Cl 1.73606 * 120.01381 * 359.95875 * 20 15 14 22 22 C 1.50695 * 109.47026 * 85.00123 * 12 11 10 23 23 C 1.41388 * 126.58221 * 219.99338 * 22 12 11 24 24 C 1.34511 * 106.84442 * 179.97438 * 23 22 12 25 25 O 1.34295 * 108.42007 * 0.27361 * 24 23 22 26 26 C 1.34310 * 109.47916 * 359.55569 * 25 24 23 27 27 H 0.97006 * 119.99747 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46941 * 59.99945 * 9 7 2 29 29 H 1.09001 * 109.46931 * 300.00057 * 9 7 2 30 30 H 1.09000 * 109.47112 * 60.00156 * 10 9 7 31 31 H 1.09002 * 109.46896 * 299.99580 * 10 9 7 32 32 H 1.00896 * 111.00418 * 56.04903 * 11 10 9 33 33 H 1.09001 * 109.47470 * 185.00155 * 14 12 11 34 34 H 1.09001 * 109.47402 * 305.00274 * 14 12 11 35 35 H 1.07999 * 119.99268 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.98565 * 180.23235 * 17 16 15 37 37 H 1.07991 * 119.99039 * 179.76972 * 18 17 16 38 38 H 1.08004 * 120.00870 * 180.02562 * 19 18 17 39 39 H 1.08001 * 126.57171 * 0.02562 * 23 22 12 40 40 H 1.08002 * 125.78644 * 179.97438 * 24 23 22 41 41 H 1.08001 * 125.79002 * 180.14574 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 -0.0001 12 6 2.4351 -6.0759 -0.0007 13 1 3.3179 -5.8282 -0.5901 14 6 1.7399 -7.2946 -0.6109 15 6 1.4373 -7.0259 -2.0626 16 6 0.1933 -6.5505 -2.4329 17 6 -0.0828 -6.2994 -3.7638 18 6 0.8815 -6.5335 -4.7266 19 6 2.1238 -7.0137 -4.3581 20 6 2.4025 -7.2603 -3.0253 21 17 3.9632 -7.8630 -2.5616 22 6 2.8475 -6.3890 1.4145 23 6 4.1394 -6.7597 1.8533 24 6 4.0613 -6.9440 3.1834 25 8 2.7965 -6.7119 3.5705 26 6 2.0571 -6.3692 2.5028 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.8718 -3.6043 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.8744 -4.9841 -0.7816 33 1 2.3932 -8.1635 -0.5308 34 1 0.8103 -7.4885 -0.0758 35 1 -0.5620 -6.3721 -1.6818 36 1 -1.0537 -5.9245 -4.0522 37 1 0.6640 -6.3407 -5.7666 38 1 2.8772 -7.1961 -5.1102 39 1 5.0201 -6.8724 1.2384 40 1 4.8764 -7.2346 3.8296 41 1 1.0053 -6.1244 2.5152 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926132768.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:22 Heat of formation + Delta-G solvation = 3.372544 kcal Electronic energy + Delta-G solvation = -23985.433229 eV Core-core repulsion = 20470.391250 eV Total energy + Delta-G solvation = -3515.041979 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.108 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36452 -40.61801 -38.20580 -37.40187 -35.63964 -33.95020 -33.53715 -31.68690 -31.35153 -30.00045 -28.65812 -26.05343 -24.61551 -23.67696 -22.63087 -22.28874 -22.05308 -20.62710 -18.59732 -18.23244 -17.93499 -16.99308 -16.74822 -16.60179 -16.37269 -16.29306 -15.66571 -15.32488 -15.05588 -14.79568 -14.53278 -14.33438 -14.19858 -13.60771 -13.45367 -13.36035 -13.19963 -12.98074 -12.92265 -12.59972 -12.45472 -12.39385 -12.34682 -12.15144 -11.92200 -11.62587 -11.39406 -11.25668 -10.58494 -10.54004 -9.87074 -9.63228 -9.39101 -9.28100 -8.20705 -6.31364 0.17790 0.28993 0.99973 1.16250 1.38853 1.39400 1.52478 1.76181 2.39687 2.39939 2.65928 3.12739 3.27744 3.61862 3.82010 4.07431 4.09536 4.16315 4.21735 4.33013 4.34325 4.42447 4.50542 4.53076 4.60471 4.68748 4.75796 4.89478 4.99782 5.05155 5.06953 5.16194 5.28268 5.39432 5.40999 5.46411 5.50199 5.65619 5.68248 5.78463 5.87381 6.11062 6.23086 6.36649 6.54940 6.84599 7.37465 8.91403 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.008737 B = 0.004587 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.904431 B = 6102.992144 C = 8167.350707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.038 3.962 10 C 0.093 3.907 11 N -0.682 5.682 12 C 0.169 3.831 13 H 0.038 0.962 14 C -0.071 4.071 15 C -0.090 4.090 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.049 4.049 21 Cl -0.073 7.073 22 C -0.182 4.182 23 C -0.226 4.226 24 C -0.043 4.043 25 O -0.192 6.192 26 C -0.024 4.024 27 H 0.264 0.736 28 H -0.007 1.007 29 H -0.002 1.002 30 H 0.048 0.952 31 H 0.007 0.993 32 H 0.342 0.658 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.236 0.764 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -19.507 -4.843 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.001 3.999 10 C -0.036 4.036 11 N -0.315 5.315 12 C 0.059 3.941 13 H 0.056 0.944 14 C -0.109 4.109 15 C -0.091 4.091 16 C -0.134 4.134 17 C -0.133 4.133 18 C -0.130 4.130 19 C -0.137 4.137 20 C -0.075 4.075 21 Cl -0.044 7.044 22 C -0.184 4.184 23 C -0.246 4.246 24 C -0.110 4.110 25 O -0.088 6.088 26 C -0.091 4.091 27 H 0.073 0.927 28 H 0.011 0.989 29 H 0.016 0.984 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.162 0.838 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.160 0.840 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.252 0.748 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.056 -19.490 -3.836 20.274 hybrid contribution 0.848 1.100 -1.070 1.753 sum 4.903 -18.390 -4.906 19.655 Atomic orbital electron populations 1.70094 1.07599 1.27693 1.51368 1.25882 0.95751 1.03021 0.94585 0.85447 0.78944 0.78978 0.77968 1.19011 1.20079 1.20197 1.21590 0.93262 0.92447 1.50977 0.92850 1.18858 0.94062 0.91849 0.95148 1.21692 0.95496 0.88731 0.97722 1.60557 1.19791 1.01106 1.50043 1.19585 0.93722 0.90131 0.90614 0.94440 1.20748 1.02389 0.97480 0.90238 1.19878 0.93699 1.00140 0.95357 1.21354 0.95905 0.98495 0.97614 1.21619 1.00915 0.98161 0.92639 1.21476 0.92236 0.97979 1.01327 1.21322 0.98674 0.99713 0.93954 1.21029 0.87386 1.04167 0.94937 1.98350 1.26896 1.86402 1.92763 1.20393 0.94277 1.07570 0.96152 1.21912 0.98256 1.08332 0.96058 1.24609 0.85545 1.04884 0.95956 1.84065 1.20722 1.67446 1.36551 1.24037 0.98352 1.03222 0.83525 0.92692 0.98898 0.98363 0.93348 0.97464 0.83773 0.89341 0.88987 0.84009 0.83303 0.82558 0.83560 0.83056 0.74805 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.01 0.34 5.46 84.65 0.46 0.81 16 3 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.04 2.07 5.23 29.85 0.16 2.23 16 10 C 0.09 4.11 5.42 86.30 0.47 4.58 16 11 N -0.68 -24.41 6.05 -495.44 -3.00 -27.40 16 12 C 0.17 5.13 2.50 44.17 0.11 5.24 16 13 H 0.04 1.25 7.60 -2.39 -0.02 1.24 16 14 C -0.07 -1.76 4.45 29.85 0.13 -1.63 16 15 C -0.09 -2.22 4.71 -19.84 -0.09 -2.31 16 16 C -0.12 -2.66 8.12 22.27 0.18 -2.48 16 17 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 18 C -0.11 -2.11 10.05 22.26 0.22 -1.89 16 19 C -0.12 -2.47 9.83 22.29 0.22 -2.25 16 20 C -0.05 -1.18 6.31 22.32 0.14 -1.04 16 21 Cl -0.07 -1.71 27.21 -2.72 -0.07 -1.78 16 22 C -0.18 -5.42 4.93 -19.94 -0.10 -5.52 16 23 C -0.23 -5.94 10.87 22.19 0.24 -5.70 16 24 C -0.04 -0.99 12.09 66.97 0.81 -0.18 16 25 O -0.19 -5.32 10.65 -2.48 -0.03 -5.35 16 26 C -0.02 -0.69 11.70 66.97 0.78 0.09 16 27 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.05 2.24 8.00 -2.39 -0.02 2.22 16 31 H 0.01 0.33 8.05 -2.39 -0.02 0.31 16 32 H 0.34 11.81 5.96 -89.70 -0.53 11.27 16 33 H 0.09 2.11 7.13 -2.39 -0.02 2.09 16 34 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 35 H 0.14 3.01 7.87 -2.91 -0.02 2.99 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 40 H 0.24 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.21 5.68 8.06 -2.91 -0.02 5.66 16 Total: -1.00 -68.23 362.21 3.91 -64.33 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.50 Total: 23.29 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 4.19 Total: -43.73 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.71 Total: -83.63 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.03 Total: -5.35 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -68.23 3.91 -64.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132768.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.699 kcal (2) G-P(sol) polarization free energy of solvation -68.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds