Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47484 * 240.00284 * 3 2 1 5 5 H 1.48499 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47076 * 120.00134 * 3 2 1 7 7 C 1.38816 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99774 * 189.09525 * 7 2 1 9 9 N 1.36932 * 119.99698 * 9.09569 * 7 2 1 10 10 C 1.48142 * 127.84422 * 15.57522 * 9 7 2 11 11 C 1.54386 * 104.62035 * 140.41135 * 10 9 7 12 12 H 1.09000 * 117.61688 * 242.76785 * 11 10 9 13 13 C 1.54138 * 106.22609 * 23.25500 * 11 10 9 14 14 H 1.09008 * 121.79108 * 221.54875 * 13 11 10 15 15 C 1.48145 * 127.83576 * 195.57149 * 9 7 2 16 16 C 1.52997 * 59.75565 * 113.48662 * 13 11 10 17 17 H 1.08996 * 117.44336 * 252.37355 * 16 13 11 18 18 N 1.46500 * 117.44290 * 107.62339 * 16 13 11 19 19 C 1.34780 * 119.99982 * 136.00337 * 18 16 13 20 20 O 1.21625 * 119.99568 * 359.97438 * 19 18 16 21 21 C 1.47255 * 119.99863 * 180.27457 * 19 18 16 22 22 N 1.29757 * 125.52869 * 359.41739 * 21 19 18 23 23 C 1.32593 * 116.75626 * 179.81247 * 22 21 19 24 24 C 1.34625 * 114.30804 * 0.50355 * 23 22 21 25 25 S 1.71627 * 109.60117 * 359.70977 * 24 23 22 26 26 C 1.51944 * 110.68891 * 179.67453 * 24 23 22 27 27 C 1.54235 * 104.84666 * 342.60599 * 26 24 23 28 28 C 1.52795 * 136.15949 * 180.18170 * 23 22 21 29 29 H 0.97004 * 119.99745 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.40475 * 21.62532 * 10 9 7 31 31 H 1.09001 * 110.50579 * 259.25409 * 10 9 7 32 32 H 1.09007 * 110.40554 * 338.37124 * 15 9 7 33 33 H 1.08999 * 110.40942 * 100.79894 * 15 9 7 34 34 H 0.97002 * 120.00017 * 315.99987 * 18 16 13 35 35 H 1.09000 * 110.36493 * 101.43840 * 26 24 23 36 36 H 1.09003 * 110.36622 * 223.76350 * 26 24 23 37 37 H 1.08998 * 110.94974 * 268.38741 * 27 26 24 38 38 H 1.08993 * 110.98923 * 144.67765 * 27 26 24 39 39 H 1.08999 * 110.31571 * 316.79608 * 28 23 22 40 40 H 1.09005 * 110.31221 * 78.87683 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1485 -3.6861 -2.6806 13 6 1.2890 -4.6116 -1.1276 14 1 1.9896 -5.0746 -1.8226 15 6 1.8196 -3.7546 0.0856 16 6 -0.1184 -5.1924 -0.9765 17 1 -0.5428 -5.2260 0.0269 18 7 -0.4879 -6.3045 -1.8556 19 6 -1.1415 -7.3713 -1.3543 20 8 -1.4242 -7.4108 -0.1720 21 6 -1.5075 -8.4919 -2.2368 22 7 -1.2645 -8.5598 -3.5096 23 6 -1.6693 -9.6556 -4.1369 24 6 -2.2940 -10.5481 -3.3461 25 16 -2.3514 -9.9515 -1.7379 26 6 -2.7283 -11.7638 -4.1475 27 6 -2.6796 -11.3050 -5.6192 28 6 -1.6178 -10.1889 -5.5679 29 1 -0.4850 0.8401 0.0004 30 1 -0.3433 -1.7010 -1.2925 31 1 -0.7332 -2.7492 0.1047 32 1 2.9092 -3.7785 0.1074 33 1 1.4117 -4.1190 1.0284 34 1 -0.2621 -6.2731 -2.7984 35 1 -2.0379 -12.5915 -3.9854 36 1 -3.7425 -12.0556 -3.8745 37 1 -3.6448 -10.9104 -5.9366 38 1 -2.3596 -12.1177 -6.2712 39 1 -1.8657 -9.3979 -6.2757 40 1 -0.6297 -10.5943 -5.7853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961103319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = 78.663251 kcal Electronic energy + Delta-G solvation = -23113.695670 eV Core-core repulsion = 19636.254998 eV Total energy + Delta-G solvation = -3477.440671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76712 -39.69382 -38.23305 -36.27793 -34.50723 -32.64326 -30.40150 -29.12145 -28.77268 -27.01561 -25.94556 -25.14944 -22.54321 -21.59711 -20.79925 -20.37329 -19.42544 -19.23152 -18.43362 -17.08318 -16.77790 -16.34942 -16.17351 -15.21583 -14.74845 -14.55154 -14.38035 -13.79809 -13.72898 -13.56368 -13.31706 -13.24143 -12.74200 -12.50725 -12.24055 -11.72854 -11.60715 -11.51205 -11.48859 -11.45287 -11.00275 -10.81072 -10.52885 -10.36229 -10.22343 -10.16679 -9.98141 -9.73079 -9.72538 -9.23327 -8.93190 -8.73270 -8.35008 -6.87282 -5.79432 -3.13823 0.01092 0.74716 1.45722 2.00270 2.94927 3.01830 3.39526 3.44011 3.45439 3.49586 3.98896 4.25659 4.32550 4.46533 4.47239 4.65976 4.92239 5.05686 5.14704 5.16032 5.24707 5.36128 5.37298 5.39904 5.45535 5.57430 5.63102 5.73163 5.73976 5.85878 6.09411 6.20962 6.51413 6.68836 6.72792 6.89053 7.14208 7.34767 7.48854 7.53420 7.71640 8.06042 8.20544 9.10941 9.73726 10.50588 11.34909 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034868 B = 0.002265 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.828028 B =12360.122908 C =12708.679377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.177 4.177 12 H 0.103 0.897 13 C -0.182 4.182 14 H 0.108 0.892 15 C 0.158 3.842 16 C 0.089 3.911 17 H 0.136 0.864 18 N -0.669 5.669 19 C 0.600 3.400 20 O -0.525 6.525 21 C -0.002 4.002 22 N -0.419 5.419 23 C 0.035 3.965 24 C -0.273 4.273 25 S 0.259 5.741 26 C -0.037 4.037 27 C -0.117 4.117 28 C -0.041 4.041 29 H 0.255 0.745 30 H 0.092 0.908 31 H 0.028 0.972 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.409 0.591 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -25.187 -11.315 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.198 4.198 12 H 0.121 0.879 13 C -0.204 4.204 14 H 0.126 0.874 15 C 0.031 3.969 16 C -0.016 4.016 17 H 0.153 0.847 18 N -0.317 5.317 19 C 0.382 3.618 20 O -0.400 6.400 21 C -0.279 4.279 22 N -0.137 5.137 23 C -0.101 4.101 24 C -0.396 4.396 25 S 0.517 5.483 26 C -0.077 4.077 27 C -0.156 4.156 28 C -0.081 4.081 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.438 -24.782 -9.617 27.351 hybrid contribution 0.737 0.740 -1.570 1.886 sum -5.701 -24.041 -11.187 27.123 Atomic orbital electron populations 1.69887 1.05060 1.25601 1.55556 1.24909 0.95657 0.98017 1.01675 0.86175 0.78530 0.82879 0.78012 1.21082 1.21543 1.20953 1.18941 0.90812 0.82254 1.43585 0.90533 1.45110 1.13322 0.99996 1.73125 1.21081 0.86995 0.92357 0.93662 1.24645 1.02195 0.92217 1.00724 0.87899 1.25114 0.90263 1.01914 1.03100 0.87368 1.21718 0.97233 0.85608 0.92373 1.22022 0.99045 0.84922 0.95634 0.84675 1.45139 1.56062 1.17500 1.13021 1.16616 0.78537 0.80734 0.85923 1.90873 1.54977 1.79398 1.14789 1.27344 1.06910 1.00799 0.92821 1.65898 1.18318 1.23291 1.06155 1.21702 1.00297 0.89090 0.99042 1.27008 1.08169 1.05005 0.99392 1.83887 1.49947 1.11148 1.03310 1.20720 1.02010 0.92475 0.92495 1.22342 0.99579 0.98132 0.95520 1.20905 1.00400 0.97557 0.89198 0.93448 0.88998 0.95454 0.93024 0.95017 0.75520 0.89348 0.90012 0.90230 0.89342 0.89768 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.86 55.49 0.60 -26.26 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 9 N -0.59 -15.27 3.38 -166.70 -0.56 -15.83 16 10 C 0.19 4.48 5.70 -2.41 -0.01 4.47 16 11 C -0.18 -3.40 6.97 -89.30 -0.62 -4.02 16 12 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 13 C -0.18 -3.31 7.33 -87.43 -0.64 -3.96 16 14 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 15 C 0.16 3.36 7.10 -0.54 0.00 3.36 16 16 C 0.09 1.56 5.93 -67.93 -0.40 1.16 16 17 H 0.14 2.59 7.40 -51.93 -0.38 2.21 16 18 N -0.67 -10.17 5.56 -54.93 -0.31 -10.48 16 19 C 0.60 9.47 7.81 -12.59 -0.10 9.37 16 20 O -0.52 -9.64 16.50 5.26 0.09 -9.56 16 21 C 0.00 -0.03 7.44 -14.77 -0.11 -0.14 16 22 N -0.42 -5.42 10.22 -6.78 -0.07 -5.49 16 23 C 0.03 0.37 7.62 -82.50 -0.63 -0.26 16 24 C -0.27 -2.53 7.17 -34.97 -0.25 -2.78 16 25 S 0.26 2.77 23.03 -107.50 -2.48 0.30 16 26 C -0.04 -0.21 6.80 -26.62 -0.18 -0.39 16 27 C -0.12 -0.52 7.11 -25.49 -0.18 -0.70 16 28 C -0.04 -0.28 6.80 -26.24 -0.18 -0.46 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.09 2.47 6.51 -51.92 -0.34 2.13 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.41 5.55 8.48 -40.82 -0.35 5.20 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -32.29 348.09 -11.33 -43.62 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.27 Total: 2.61 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.56 Total: -1.09 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.34 Total: -58.06 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.29 -11.33 -43.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961103319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.281 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds