Wall clock time and date at job start Tue Mar 31 2020 12:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99954 * 2 1 4 4 H 1.48506 * 109.47484 * 240.00284 * 3 2 1 5 5 H 1.48499 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47076 * 120.00134 * 3 2 1 7 7 C 1.38816 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99774 * 189.09525 * 7 2 1 9 9 N 1.36932 * 119.99698 * 9.09569 * 7 2 1 10 10 C 1.48142 * 127.84422 * 15.57522 * 9 7 2 11 11 C 1.54386 * 104.62035 * 140.41135 * 10 9 7 12 12 H 1.09000 * 117.61688 * 242.76785 * 11 10 9 13 13 C 1.54138 * 106.22609 * 23.25500 * 11 10 9 14 14 H 1.09008 * 121.79108 * 221.54875 * 13 11 10 15 15 C 1.48145 * 127.83576 * 195.57149 * 9 7 2 16 16 C 1.52997 * 59.75565 * 113.48662 * 13 11 10 17 17 H 1.08996 * 117.44336 * 252.37355 * 16 13 11 18 18 N 1.46500 * 117.44290 * 107.62339 * 16 13 11 19 19 C 1.34780 * 119.99982 * 136.00337 * 18 16 13 20 20 O 1.21625 * 119.99568 * 359.97438 * 19 18 16 21 21 C 1.47255 * 119.99863 * 180.27457 * 19 18 16 22 22 N 1.29757 * 125.52869 * 359.41739 * 21 19 18 23 23 C 1.32593 * 116.75626 * 179.81247 * 22 21 19 24 24 C 1.34625 * 114.30804 * 0.50355 * 23 22 21 25 25 S 1.71627 * 109.60117 * 359.70977 * 24 23 22 26 26 C 1.51944 * 110.68891 * 179.67453 * 24 23 22 27 27 C 1.54235 * 104.84666 * 342.60599 * 26 24 23 28 28 C 1.52795 * 136.15949 * 180.18170 * 23 22 21 29 29 H 0.97004 * 119.99745 * 359.97438 * 1 2 3 30 30 H 1.09008 * 110.40475 * 21.62532 * 10 9 7 31 31 H 1.09001 * 110.50579 * 259.25409 * 10 9 7 32 32 H 1.09007 * 110.40554 * 338.37124 * 15 9 7 33 33 H 1.08999 * 110.40942 * 100.79894 * 15 9 7 34 34 H 0.97002 * 120.00017 * 315.99987 * 18 16 13 35 35 H 1.09000 * 110.36493 * 101.43840 * 26 24 23 36 36 H 1.09003 * 110.36622 * 223.76350 * 26 24 23 37 37 H 1.08998 * 110.94974 * 268.38741 * 27 26 24 38 38 H 1.08993 * 110.98923 * 144.67765 * 27 26 24 39 39 H 1.08999 * 110.31571 * 316.79608 * 28 23 22 40 40 H 1.09005 * 110.31221 * 78.87683 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1473 9 7 1.3385 -2.3805 -0.1885 10 6 -0.0342 -2.5705 -0.7123 11 6 0.0638 -3.8160 -1.6193 12 1 -0.1485 -3.6861 -2.6806 13 6 1.2890 -4.6116 -1.1276 14 1 1.9896 -5.0746 -1.8226 15 6 1.8196 -3.7546 0.0856 16 6 -0.1184 -5.1924 -0.9765 17 1 -0.5428 -5.2260 0.0269 18 7 -0.4879 -6.3045 -1.8556 19 6 -1.1415 -7.3713 -1.3543 20 8 -1.4242 -7.4108 -0.1720 21 6 -1.5075 -8.4919 -2.2368 22 7 -1.2645 -8.5598 -3.5096 23 6 -1.6693 -9.6556 -4.1369 24 6 -2.2940 -10.5481 -3.3461 25 16 -2.3514 -9.9515 -1.7379 26 6 -2.7283 -11.7638 -4.1475 27 6 -2.6796 -11.3050 -5.6192 28 6 -1.6178 -10.1889 -5.5679 29 1 -0.4850 0.8401 0.0004 30 1 -0.3433 -1.7010 -1.2925 31 1 -0.7332 -2.7492 0.1047 32 1 2.9092 -3.7785 0.1074 33 1 1.4117 -4.1190 1.0284 34 1 -0.2621 -6.2731 -2.7984 35 1 -2.0379 -12.5915 -3.9854 36 1 -3.7425 -12.0556 -3.8745 37 1 -3.6448 -10.9104 -5.9366 38 1 -2.3596 -12.1177 -6.2712 39 1 -1.8657 -9.3979 -6.2757 40 1 -0.6297 -10.5943 -5.7853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961103319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:25 Heat of formation + Delta-G solvation = 57.728380 kcal Electronic energy + Delta-G solvation = -23114.603474 eV Core-core repulsion = 19636.254998 eV Total energy + Delta-G solvation = -3478.348475 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65252 -40.94401 -39.75285 -36.95428 -36.16556 -34.36422 -32.22654 -29.82013 -29.48461 -28.81636 -27.61924 -26.30323 -23.79354 -22.67515 -22.06025 -21.69584 -20.94967 -20.36231 -19.24084 -18.85421 -18.07625 -17.55041 -16.99851 -16.73480 -16.23208 -15.90810 -15.45513 -15.07711 -14.96701 -14.65429 -14.60999 -14.31272 -13.84035 -13.74976 -13.34894 -13.26879 -13.00134 -12.91085 -12.68251 -12.28007 -12.18827 -12.11889 -12.03728 -11.93782 -11.89886 -11.73125 -11.66901 -10.99975 -10.85833 -10.72716 -10.52296 -9.93026 -9.60463 -8.94043 -7.92260 -5.29407 -0.88506 -0.10663 0.64346 1.07210 1.47043 1.50479 1.57223 1.79211 1.92188 2.47660 2.59937 2.80555 3.27759 3.46539 3.47695 3.58796 3.77226 3.89259 3.98813 4.03731 4.15306 4.25496 4.38869 4.46645 4.51674 4.69900 4.74414 4.82919 4.84276 4.88473 4.96755 5.10349 5.17895 5.22686 5.30763 5.31335 5.41721 5.48039 5.62685 6.12017 6.15554 6.41660 6.85583 6.99038 7.66071 8.44499 9.21620 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.034868 B = 0.002265 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.828028 B =12360.122908 C =12708.679377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.984 3.016 4 H -0.275 1.275 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.190 3.810 11 C -0.178 4.178 12 H 0.122 0.878 13 C -0.162 4.162 14 H 0.138 0.862 15 C 0.151 3.849 16 C 0.110 3.890 17 H 0.117 0.883 18 N -0.661 5.661 19 C 0.602 3.398 20 O -0.559 6.559 21 C -0.044 4.044 22 N -0.428 5.428 23 C 0.006 3.994 24 C -0.255 4.255 25 S 0.275 5.725 26 C -0.040 4.040 27 C -0.107 4.107 28 C -0.042 4.042 29 H 0.251 0.749 30 H 0.060 0.940 31 H 0.000 1.000 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.419 0.581 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 -27.897 -13.485 31.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.340 5.340 10 C 0.064 3.936 11 C -0.199 4.199 12 H 0.140 0.860 13 C -0.183 4.183 14 H 0.156 0.844 15 C 0.025 3.975 16 C 0.003 3.997 17 H 0.134 0.866 18 N -0.310 5.310 19 C 0.386 3.614 20 O -0.437 6.437 21 C -0.318 4.318 22 N -0.146 5.146 23 C -0.130 4.130 24 C -0.378 4.378 25 S 0.532 5.468 26 C -0.080 4.080 27 C -0.146 4.146 28 C -0.081 4.081 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.018 0.982 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.257 0.743 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.103 0.897 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.916 -27.520 -11.806 30.525 hybrid contribution 0.518 1.405 -0.899 1.747 sum -5.398 -26.115 -12.705 29.539 Atomic orbital electron populations 1.70093 1.06602 1.25926 1.56952 1.25794 0.96524 1.01449 1.01930 0.85088 0.77153 0.78275 0.78394 1.20105 1.22023 1.20034 1.19359 0.91437 0.83379 1.42885 0.89836 1.45399 1.13731 1.01156 1.73709 1.20800 0.86203 0.93432 0.93161 1.24316 1.03896 0.90980 1.00675 0.85970 1.25023 0.90560 1.01009 1.01711 0.84399 1.21846 0.98065 0.84142 0.93482 1.21593 0.98377 0.84707 0.94996 0.86565 1.44945 1.56122 1.16797 1.13129 1.16894 0.77577 0.81086 0.85829 1.90846 1.56286 1.80227 1.16362 1.26809 1.10224 1.01622 0.93187 1.65866 1.18165 1.24579 1.05981 1.22406 1.00784 0.88741 1.01074 1.27658 1.05857 1.05918 0.98362 1.83802 1.48865 1.09685 1.04411 1.21016 1.03320 0.91229 0.92386 1.22397 0.99077 0.97999 0.95118 1.21110 1.01949 0.98277 0.86790 0.94039 0.92156 0.98189 0.91733 0.95531 0.74297 0.87373 0.88365 0.89818 0.86522 0.89713 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 10.86 21.65 0.24 -57.50 16 2 C -0.06 -3.63 5.40 84.86 0.46 -3.17 16 3 Si 0.98 45.77 29.56 68.60 2.03 47.80 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.24 -13.71 10.35 84.04 0.87 -12.84 16 8 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 9 N -0.62 -32.49 3.38 -681.33 -2.30 -34.79 16 10 C 0.19 9.61 5.70 86.53 0.49 10.10 16 11 C -0.18 -6.86 6.97 -9.94 -0.07 -6.93 16 12 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 13 C -0.16 -5.72 7.33 -8.73 -0.06 -5.79 16 14 H 0.14 4.13 8.14 -2.38 -0.02 4.11 16 15 C 0.15 6.43 7.10 87.74 0.62 7.05 16 16 C 0.11 3.85 5.93 44.99 0.27 4.12 16 17 H 0.12 4.62 7.40 -2.39 -0.02 4.60 16 18 N -0.66 -19.87 5.56 -445.96 -2.48 -22.35 16 19 C 0.60 19.18 7.81 86.61 0.68 19.86 16 20 O -0.56 -21.08 16.50 -4.11 -0.07 -21.15 16 21 C -0.04 -1.18 7.44 87.37 0.65 -0.53 16 22 N -0.43 -10.65 10.22 -175.38 -1.79 -12.44 16 23 C 0.01 0.12 7.62 42.29 0.32 0.44 16 24 C -0.25 -4.09 7.17 25.26 0.18 -3.91 16 25 S 0.28 5.60 23.03 -56.49 -1.30 4.30 16 26 C -0.04 -0.28 6.80 30.66 0.21 -0.07 16 27 C -0.11 -0.50 7.11 31.40 0.22 -0.28 16 28 C -0.04 -0.44 6.80 30.91 0.21 -0.23 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.06 3.41 6.51 -2.38 -0.02 3.39 16 31 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.42 10.95 8.48 -92.71 -0.79 10.17 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -72.73 348.09 -0.34 -73.07 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.29 Total: 15.24 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.05 Total: 7.82 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.34 Total: -127.08 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.07 Total: -21.15 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -1.30 Total: 4.30 kcal Total: -72.73 -0.34 -73.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961103319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.795 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds