Wall clock time and date at job start Tue Mar 31 2020 12:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00221 * 2 1 4 4 H 1.48498 * 109.47102 * 270.00737 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00155 * 3 2 1 6 6 H 1.48492 * 109.47279 * 150.00189 * 3 2 1 7 7 C 1.38817 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99751 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99883 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99733 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.85173 * 336.20635 * 10 9 7 12 12 C 1.53788 * 113.68564 * 107.47189 * 10 9 7 13 13 C 1.53782 * 87.08023 * 139.99085 * 12 10 9 14 14 H 1.08999 * 113.68556 * 89.12783 * 13 12 10 15 15 C 1.53004 * 113.61001 * 220.01524 * 13 12 10 16 16 N 1.46492 * 109.47229 * 272.49801 * 15 13 12 17 17 C 1.34773 * 120.00040 * 180.02562 * 16 15 13 18 18 O 1.21728 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.46494 * 120.00425 * 180.02562 * 17 16 15 20 20 C 1.36109 * 125.71716 * 179.97438 * 19 17 16 21 21 C 1.42229 * 107.62949 * 180.02562 * 20 19 17 22 22 C 1.45591 * 140.77746 * 180.02562 * 21 20 19 23 23 C 1.31811 * 114.63043 * 179.72938 * 22 21 20 24 24 S 1.75354 * 111.24550 * 0.27187 * 23 22 21 25 25 C 1.38173 * 106.99603 * 0.22106 * 21 20 19 26 26 N 1.37463 * 108.16453 * 0.15710 * 25 21 20 27 27 H 0.97007 * 125.67864 * 180.25500 * 26 25 21 28 28 C 1.53776 * 87.08110 * 334.56536 * 13 12 10 29 29 H 0.96996 * 119.99536 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99904 * 0.02562 * 9 7 2 31 31 H 1.08999 * 113.61143 * 25.43910 * 12 10 9 32 32 H 1.08997 * 113.61336 * 254.54041 * 12 10 9 33 33 H 1.09004 * 109.46534 * 152.50198 * 15 13 12 34 34 H 1.08991 * 109.47228 * 32.50299 * 15 13 12 35 35 H 0.97003 * 120.00430 * 0.02562 * 16 15 13 36 36 H 1.08005 * 126.18475 * 0.04228 * 20 19 17 37 37 H 1.08002 * 122.68837 * 0.02562 * 22 21 20 38 38 H 1.08002 * 124.38046 * 180.29310 * 23 22 21 39 39 H 1.09000 * 113.61327 * 139.97669 * 28 13 12 40 40 H 1.08996 * 113.61859 * 270.79848 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 1 3.5280 -3.2969 0.4046 12 6 4.7867 -2.7948 -1.3446 13 6 5.9840 -3.3112 -0.5293 14 1 5.9129 -4.3669 -0.2676 15 6 7.3409 -2.9379 -1.1298 16 7 7.7425 -3.9584 -2.1010 17 6 8.9123 -3.8386 -2.7596 18 8 9.6348 -2.8822 -2.5478 19 6 9.3137 -4.8588 -3.7313 20 6 10.4639 -4.8541 -4.4590 21 6 10.4615 -6.0183 -5.2760 22 6 11.2766 -6.6989 -6.2720 23 6 10.7617 -7.8234 -6.7279 24 16 9.2107 -8.1603 -5.9825 25 6 9.2861 -6.6948 -5.0116 26 7 8.5826 -5.9803 -4.0713 27 1 7.7215 -6.2285 -3.6998 28 6 5.5263 -2.3658 0.5938 29 1 -0.4849 0.8400 0.0004 30 1 3.8647 -0.3621 -0.0007 31 1 5.0138 -1.9126 -1.9430 32 1 4.2771 -3.5731 -1.9126 33 1 8.0856 -2.8788 -0.3359 34 1 7.2641 -1.9718 -1.6285 35 1 7.1666 -4.7204 -2.2701 36 1 11.2385 -4.1023 -4.4225 37 1 12.2292 -6.3157 -6.6069 38 1 11.2342 -8.4558 -7.4650 39 1 5.6137 -2.7977 1.5908 40 1 5.9568 -1.3667 0.5262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086162913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:51 Heat of formation + Delta-G solvation = 68.158044 kcal Electronic energy + Delta-G solvation = -22742.708176 eV Core-core repulsion = 19264.811965 eV Total energy + Delta-G solvation = -3477.896211 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.67720 -39.65175 -38.55721 -35.73514 -34.95648 -33.40767 -30.86737 -30.85367 -29.34819 -27.38160 -25.29054 -24.08450 -23.48272 -22.69274 -21.13388 -20.50007 -19.97633 -19.54077 -19.18682 -17.47835 -17.08493 -16.29153 -15.83384 -15.39858 -15.21036 -14.92712 -14.83401 -14.56013 -14.33481 -13.87493 -13.79468 -13.34695 -13.09166 -12.72582 -12.30494 -12.23779 -12.06334 -12.03768 -11.71207 -11.64561 -11.21147 -10.95211 -10.61781 -10.55511 -10.19656 -10.15846 -9.90999 -9.88148 -9.60404 -9.30543 -8.94351 -8.67533 -8.05888 -7.32221 -5.82752 -3.18658 0.67404 0.92294 1.03389 1.59554 2.51037 2.68360 2.84052 3.11503 3.34427 3.37554 3.42633 4.25584 4.45947 4.54286 4.61904 4.75896 4.77244 5.00321 5.05099 5.20027 5.29425 5.34733 5.35131 5.55668 5.63574 5.71679 5.72097 5.75038 5.80846 6.01919 6.04644 6.10195 6.14196 6.22714 6.31535 6.41081 6.59405 6.71698 6.89884 7.18527 7.85767 7.93081 8.36956 9.14540 9.87280 10.06771 11.35330 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.024127 B = 0.002107 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.251787 B =13283.341565 C =13748.264498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.737 5.737 10 C 0.172 3.828 11 H 0.084 0.916 12 C -0.162 4.162 13 C -0.128 4.128 14 H 0.091 0.909 15 C 0.132 3.868 16 N -0.723 5.723 17 C 0.585 3.415 18 O -0.524 6.524 19 C -0.007 4.007 20 C -0.068 4.068 21 C -0.163 4.163 22 C -0.070 4.070 23 C -0.222 4.222 24 S 0.134 5.866 25 C -0.009 4.009 26 N -0.525 5.525 27 H 0.421 0.579 28 C -0.145 4.145 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.066 0.934 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.959 -18.117 -11.089 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.109 0.891 15 C 0.009 3.991 16 N -0.373 5.373 17 C 0.371 3.629 18 O -0.400 6.400 19 C -0.120 4.120 20 C -0.096 4.096 21 C -0.176 4.176 22 C -0.100 4.100 23 C -0.356 4.356 24 S 0.388 5.612 25 C -0.237 4.237 26 N -0.129 5.129 27 H 0.259 0.741 28 C -0.184 4.184 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.188 0.812 39 H 0.085 0.915 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.025 -18.546 -10.954 30.807 hybrid contribution 0.805 1.771 0.139 1.951 sum 22.831 -16.774 -10.815 30.325 Atomic orbital electron populations 1.69704 1.05132 1.25934 1.57165 1.24709 0.95280 0.97326 1.01804 0.86549 0.79235 0.84897 0.77853 1.21023 1.21647 1.20257 1.19127 0.80672 0.94754 1.43415 0.89158 1.42757 1.04101 1.02003 1.88753 1.21491 0.89522 0.90101 0.92797 0.89819 1.23940 0.95897 1.00555 0.99882 1.22657 0.92979 0.99938 0.99180 0.89123 1.21514 0.95881 0.90943 0.90742 1.45940 1.20850 1.27370 1.43146 1.16962 0.81526 0.84534 0.79848 1.90887 1.52796 1.31195 1.65107 1.20092 0.95590 0.91241 1.05061 1.20759 0.96831 0.96957 0.95074 1.19402 0.95624 0.98686 1.03904 1.20342 1.00034 0.94111 0.95525 1.24892 0.99599 1.02872 1.08244 1.84009 1.20957 1.17698 1.38574 1.23599 0.97671 1.01382 1.01093 1.41414 1.19051 1.18830 1.33596 0.74073 1.23468 0.98908 0.98963 0.97092 0.92990 0.80412 0.90339 0.92353 0.91224 0.90847 0.77154 0.82478 0.83671 0.81182 0.91546 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 8 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -16.90 5.21 -52.63 -0.27 -17.17 16 10 C 0.17 3.06 4.48 -67.12 -0.30 2.76 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.16 -2.40 7.43 -25.91 -0.19 -2.59 16 13 C -0.13 -1.49 3.76 -89.81 -0.34 -1.83 16 14 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.13 1.52 5.51 -4.04 -0.02 1.50 16 16 N -0.72 -7.28 5.55 -61.68 -0.34 -7.62 16 17 C 0.59 7.10 7.78 -12.94 -0.10 7.00 16 18 O -0.52 -8.23 16.85 5.16 0.09 -8.14 16 19 C -0.01 -0.07 6.97 -82.47 -0.57 -0.65 16 20 C -0.07 -0.73 10.58 -38.82 -0.41 -1.14 16 21 C -0.16 -1.60 6.80 -105.46 -0.72 -2.32 16 22 C -0.07 -0.52 10.42 -38.55 -0.40 -0.92 16 23 C -0.22 -1.40 11.03 28.84 0.32 -1.09 16 24 S 0.13 0.94 23.24 -107.50 -2.50 -1.56 16 25 C -0.01 -0.08 8.41 -15.05 -0.13 -0.20 16 26 N -0.53 -4.39 6.08 -7.94 -0.05 -4.43 16 27 H 0.42 2.32 8.14 -40.82 -0.33 1.99 16 28 C -0.14 -2.04 7.39 -25.92 -0.19 -2.23 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.24 5.79 -40.82 -0.24 8.00 16 31 H 0.08 1.27 7.90 -51.93 -0.41 0.86 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 35 H 0.40 2.91 7.54 -40.82 -0.31 2.60 16 36 H 0.16 1.54 8.06 -52.48 -0.42 1.11 16 37 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -34.04 352.39 -10.10 -44.14 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.08 Total: 9.20 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -3.31 Total: -8.73 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.11 Total: -57.46 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.09 Total: -8.14 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.04 -10.10 -44.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086162913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.301 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds