Wall clock time and date at job start Tue Mar 31 2020 12:15:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46497 * 120.00159 * 2 1
4 4 C 1.50698 * 109.46940 * 269.99717 * 3 2 1
5 5 C 1.28876 * 121.25625 * 95.02526 * 4 3 2
6 6 C 1.51426 * 117.50181 * 180.02562 * 5 4 3
7 7 S 1.83832 * 102.54197 * 16.28324 * 6 5 4
8 8 C 1.51434 * 121.25050 * 274.74274 * 4 3 2
9 9 C 1.34776 * 119.99936 * 179.97438 * 2 1 3
10 10 O 1.21593 * 120.00202 * 175.14408 * 9 2 1
11 11 C 1.47534 * 119.99998 * 355.15687 * 9 2 1
12 12 C 1.39666 * 120.19646 * 316.41796 * 11 9 2
13 13 C 1.37823 * 119.92152 * 180.30333 * 12 11 9
14 14 C 1.38576 * 120.32181 * 359.69946 * 13 12 11
15 15 C 1.38028 * 120.40000 * 0.02562 * 14 13 12
16 16 C 1.38825 * 120.07389 * 0.02562 * 15 14 13
17 17 O 1.35517 * 120.16190 * 179.97438 * 16 15 14
18 18 C 1.34814 * 117.00196 * 5.04804 * 17 16 15
19 19 H 1.08000 * 120.00040 * 354.88228 * 18 17 16
20 20 C 1.38697 * 120.00328 * 174.89224 * 18 17 16
21 21 N 1.31518 * 119.99780 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00211 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.46757 * 59.99421 * 22 20 18
24 24 H 1.48498 * 109.47017 * 179.97438 * 22 20 18
25 25 H 1.48495 * 109.46845 * 299.99628 * 22 20 18
26 26 H 1.08994 * 109.47671 * 273.15965 * 1 2 3
27 27 H 1.09005 * 109.46878 * 33.16473 * 1 2 3
28 28 H 1.09006 * 109.47123 * 153.15694 * 1 2 3
29 29 H 1.08997 * 109.47405 * 29.99280 * 3 2 1
30 30 H 1.08996 * 109.47511 * 149.99720 * 3 2 1
31 31 H 1.08000 * 121.24189 * 359.97438 * 5 4 3
32 32 H 1.09003 * 110.79485 * 134.54511 * 6 5 4
33 33 H 1.09000 * 110.79061 * 257.82575 * 6 5 4
34 34 H 1.09002 * 110.79172 * 281.97366 * 8 4 3
35 35 H 1.09000 * 110.79242 * 45.44692 * 8 4 3
36 36 H 1.08001 * 120.04095 * 0.02661 * 12 11 9
37 37 H 1.07998 * 119.84697 * 179.72815 * 13 12 11
38 38 H 1.08005 * 119.79935 * 180.02562 * 14 13 12
39 39 H 1.07999 * 119.95777 * 180.02562 * 15 14 13
40 40 H 0.97002 * 119.99911 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4487 1.7036 -1.4208
5 6 1.6552 2.5242 -2.0192
6 6 1.9882 2.9033 -3.4469
7 16 3.1942 1.6042 -3.9340
8 6 3.6465 1.1978 -2.1971
9 6 2.1388 -1.1672 0.0005
10 8 3.3515 -1.1692 -0.0886
11 6 1.4051 -2.4425 0.1090
12 6 0.3606 -2.5763 1.0265
13 6 -0.3169 -3.7722 1.1275
14 6 0.0288 -4.8426 0.3181
15 6 1.0550 -4.7233 -0.5972
16 6 1.7492 -3.5266 -0.7120
17 8 2.7575 -3.4077 -1.6097
18 6 2.9692 -4.4529 -2.4343
19 1 2.4039 -5.3643 -2.3071
20 6 3.9133 -4.3581 -3.4460
21 7 4.6016 -3.2482 -3.6011
22 14 4.2072 -5.8067 -4.5882
23 1 2.9478 -6.1373 -5.3024
24 1 5.2578 -5.4528 -5.5761
25 1 4.6490 -6.9812 -3.7943
26 1 -0.3634 0.0566 1.0260
27 1 -0.3633 0.8603 -0.5622
28 1 -0.3634 -0.9170 -0.4641
29 1 1.6084 2.0284 0.5137
30 1 3.1498 1.1384 0.5138
31 1 0.7850 2.9256 -1.5212
32 1 1.0990 2.8613 -4.0759
33 1 2.4431 3.8930 -3.4883
34 1 4.5525 1.7243 -1.8970
35 1 3.7632 0.1215 -2.0706
36 1 0.0872 -1.7449 1.6593
37 1 -1.1214 -3.8757 1.8405
38 1 -0.5081 -5.7758 0.4040
39 1 1.3182 -5.5620 -1.2247
40 1 5.2615 -3.1817 -4.3089
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001118789429.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:40
Heat of formation + Delta-G solvation = -2.032105 kcal
Electronic energy + Delta-G solvation = -24849.864211 eV
Core-core repulsion = 21336.631576 eV
Total energy + Delta-G solvation = -3513.232635 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-39.91596 -38.53534 -36.91005 -36.35036 -34.61461 -32.34733 -30.93126 -29.39877
-28.96739 -27.46359 -26.33492 -25.40970 -24.34798 -22.36555 -21.49590 -19.42613
-18.19952 -18.05579 -17.19172 -16.56155 -16.22020 -15.81662 -15.26163 -14.78935
-14.57618 -14.51386 -14.10319 -13.86463 -13.77068 -13.48795 -13.09151 -12.93641
-12.72662 -12.57304 -12.40785 -12.15529 -11.72543 -11.62775 -11.61673 -11.42586
-11.24682 -11.11029 -10.87332 -10.76366 -10.47091 -10.18070 -9.62016 -9.19818
-8.88398 -8.86600 -8.33876 -8.24949 -7.40053 -7.33569 -6.45999 -4.05550
1.77093 1.92764 2.09058 2.29602 2.59277 3.12342 3.14169 3.17137
3.43114 3.61398 3.93655 4.50839 4.59054 4.78174 5.04988 5.11194
5.14488 5.22420 5.32709 5.36484 5.42250 5.48443 5.52654 5.65250
5.68503 5.77164 5.80151 5.92945 5.99536 6.13491 6.15031 6.29015
6.55401 6.61784 6.76338 6.85500 6.94741 7.03865 7.23407 7.28133
7.67343 7.80124 7.95062 8.86911 8.95872 9.63652 10.68704
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.009548 B = 0.006178 C = 0.004065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2931.810337 B = 4531.358605 C = 6886.955183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.083 3.917
2 N -0.619 5.619
3 C 0.166 3.834
4 C -0.123 4.123
5 C -0.164 4.164
6 C -0.047 4.047
7 S -0.282 6.282
8 C -0.032 4.032
9 C 0.574 3.426
10 O -0.512 6.512
11 C -0.222 4.222
12 C -0.041 4.041
13 C -0.229 4.229
14 C -0.053 4.053
15 C -0.236 4.236
16 C 0.189 3.811
17 O -0.141 6.141
18 C -0.402 4.402
19 H 0.093 0.907
20 C 0.046 3.954
21 N -0.837 5.837
22 Si 0.940 3.060
23 H -0.269 1.269
24 H -0.277 1.277
25 H -0.269 1.269
26 H 0.051 0.949
27 H 0.060 0.940
28 H 0.081 0.919
29 H 0.082 0.918
30 H 0.091 0.909
31 H 0.131 0.869
32 H 0.102 0.898
33 H 0.095 0.905
34 H 0.097 0.903
35 H 0.132 0.868
36 H 0.116 0.884
37 H 0.109 0.891
38 H 0.110 0.890
39 H 0.131 0.869
40 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.405 9.325 5.760 14.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.354 5.354
3 C 0.042 3.958
4 C -0.126 4.126
5 C -0.185 4.185
6 C -0.194 4.194
7 S -0.056 6.056
8 C -0.179 4.179
9 C 0.364 3.636
10 O -0.386 6.386
11 C -0.227 4.227
12 C -0.059 4.059
13 C -0.248 4.248
14 C -0.072 4.072
15 C -0.256 4.256
16 C 0.130 3.870
17 O -0.040 6.040
18 C -0.477 4.477
19 H 0.111 0.889
20 C -0.161 4.161
21 N -0.469 5.469
22 Si 0.764 3.236
23 H -0.194 1.194
24 H -0.201 1.201
25 H -0.194 1.194
26 H 0.070 0.930
27 H 0.079 0.921
28 H 0.100 0.900
29 H 0.101 0.899
30 H 0.110 0.890
31 H 0.149 0.851
32 H 0.120 0.880
33 H 0.113 0.887
34 H 0.115 0.885
35 H 0.150 0.850
36 H 0.134 0.866
37 H 0.127 0.873
38 H 0.128 0.872
39 H 0.149 0.851
40 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -7.947 9.153 4.353 12.880
hybrid contribution -0.406 -0.366 0.426 0.692
sum -8.353 8.787 4.779 13.032
Atomic orbital electron populations
1.21851 0.79890 1.03421 1.00857 1.47739 1.06583 1.05020 1.76080
1.20113 0.98496 0.85600 0.91626 1.21998 0.95574 0.96782 0.98257
1.22441 1.00234 1.00255 0.95521 1.23041 1.00465 0.99638 0.96298
1.88312 1.54756 1.48077 1.14447 1.23208 0.97969 1.07534 0.89178
1.18279 0.87063 0.82995 0.75218 1.90791 1.13712 1.86671 1.47428
1.18684 1.04065 0.93477 1.06475 1.20834 0.92455 0.97186 0.95458
1.20468 1.04729 0.94437 1.05125 1.20896 0.95048 0.97539 0.93671
1.21134 1.01125 0.98695 1.04598 1.19212 0.86800 0.91627 0.89337
1.84032 1.40130 1.40751 1.39102 1.21359 1.23288 0.92806 1.10281
0.88943 1.25335 0.95445 0.98327 0.97042 1.70050 1.21140 1.25221
1.30463 0.85804 0.78665 0.79792 0.79327 1.19392 1.20147 1.19384
0.93030 0.92146 0.90047 0.89925 0.89025 0.85090 0.87971 0.88657
0.88468 0.85024 0.86584 0.87255 0.87210 0.85096 0.91754
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.03 8.99 59.84 0.54 1.57 16
2 N -0.62 -9.99 2.86 -184.20 -0.53 -10.52 16
3 C 0.17 2.29 5.63 -5.20 -0.03 2.26 16
4 C -0.12 -1.83 5.52 -100.14 -0.55 -2.38 16
5 C -0.16 -2.03 9.88 -35.10 -0.35 -2.38 16
6 C -0.05 -0.59 7.46 36.36 0.27 -0.32 16
7 S -0.28 -5.10 23.55 -107.50 -2.53 -7.63 16
8 C -0.03 -0.58 7.32 36.37 0.27 -0.31 16
9 C 0.57 12.21 7.04 -12.47 -0.09 12.13 16
10 O -0.51 -12.96 14.62 -8.27 -0.12 -13.08 16
11 C -0.22 -4.72 4.89 -104.81 -0.51 -5.23 16
12 C -0.04 -0.69 7.77 -39.20 -0.30 -0.99 16
13 C -0.23 -3.66 10.02 -39.61 -0.40 -4.06 16
14 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16
15 C -0.24 -5.02 9.16 -39.44 -0.36 -5.38 16
16 C 0.19 4.61 6.63 -38.60 -0.26 4.35 16
17 O -0.14 -4.08 8.65 -12.74 -0.11 -4.19 16
18 C -0.40 -11.27 9.49 30.90 0.29 -10.98 16
19 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16
20 C 0.05 1.28 5.49 -17.52 -0.10 1.18 16
21 N -0.84 -24.95 13.67 55.48 0.76 -24.19 16
22 Si 0.94 20.69 29.55 -169.99 -5.02 15.67 16
23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16
25 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
26 H 0.05 0.51 7.19 -51.93 -0.37 0.14 16
27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16
28 H 0.08 1.15 6.13 -51.93 -0.32 0.83 16
29 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16
30 H 0.09 1.37 7.49 -51.93 -0.39 0.98 16
31 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16
32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16
33 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16
34 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16
35 H 0.13 3.08 6.78 -51.93 -0.35 2.73 16
36 H 0.12 1.59 6.32 -52.49 -0.33 1.26 16
37 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16
38 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16
39 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16
40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
LS Contribution 347.28 15.07 5.23 5.23
Total: -1.00 -33.90 347.28 -9.13 -43.03
By element:
Atomic # 1 Polarization: 12.38 SS G_CDS: -4.84 Total: 7.54 kcal
Atomic # 6 Polarization: -9.88 SS G_CDS: -1.97 Total: -11.86 kcal
Atomic # 7 Polarization: -34.94 SS G_CDS: 0.23 Total: -34.71 kcal
Atomic # 8 Polarization: -17.04 SS G_CDS: -0.23 Total: -17.27 kcal
Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal
Atomic # 16 Polarization: -5.10 SS G_CDS: -2.53 Total: -7.63 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -33.90 -9.13 -43.03 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118789429.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.996 kcal
(2) G-P(sol) polarization free energy of solvation -33.896 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds