Wall clock time and date at job start Tue Mar 31 2020 12:15:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46497 * 120.00159 * 2 1
4 4 C 1.50698 * 109.46940 * 269.99717 * 3 2 1
5 5 C 1.28876 * 121.25625 * 95.02526 * 4 3 2
6 6 C 1.51426 * 117.50181 * 180.02562 * 5 4 3
7 7 S 1.83832 * 102.54197 * 16.28324 * 6 5 4
8 8 C 1.51434 * 121.25050 * 274.74274 * 4 3 2
9 9 C 1.34776 * 119.99936 * 179.97438 * 2 1 3
10 10 O 1.21593 * 120.00202 * 175.14408 * 9 2 1
11 11 C 1.47534 * 119.99998 * 355.15687 * 9 2 1
12 12 C 1.39666 * 120.19646 * 316.41796 * 11 9 2
13 13 C 1.37823 * 119.92152 * 180.30333 * 12 11 9
14 14 C 1.38576 * 120.32181 * 359.69946 * 13 12 11
15 15 C 1.38028 * 120.40000 * 0.02562 * 14 13 12
16 16 C 1.38825 * 120.07389 * 0.02562 * 15 14 13
17 17 O 1.35517 * 120.16190 * 179.97438 * 16 15 14
18 18 C 1.34814 * 117.00196 * 5.04804 * 17 16 15
19 19 H 1.08000 * 120.00040 * 354.88228 * 18 17 16
20 20 C 1.38697 * 120.00328 * 174.89224 * 18 17 16
21 21 N 1.31518 * 119.99780 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00211 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.46757 * 59.99421 * 22 20 18
24 24 H 1.48498 * 109.47017 * 179.97438 * 22 20 18
25 25 H 1.48495 * 109.46845 * 299.99628 * 22 20 18
26 26 H 1.08994 * 109.47671 * 273.15965 * 1 2 3
27 27 H 1.09005 * 109.46878 * 33.16473 * 1 2 3
28 28 H 1.09006 * 109.47123 * 153.15694 * 1 2 3
29 29 H 1.08997 * 109.47405 * 29.99280 * 3 2 1
30 30 H 1.08996 * 109.47511 * 149.99720 * 3 2 1
31 31 H 1.08000 * 121.24189 * 359.97438 * 5 4 3
32 32 H 1.09003 * 110.79485 * 134.54511 * 6 5 4
33 33 H 1.09000 * 110.79061 * 257.82575 * 6 5 4
34 34 H 1.09002 * 110.79172 * 281.97366 * 8 4 3
35 35 H 1.09000 * 110.79242 * 45.44692 * 8 4 3
36 36 H 1.08001 * 120.04095 * 0.02661 * 12 11 9
37 37 H 1.07998 * 119.84697 * 179.72815 * 13 12 11
38 38 H 1.08005 * 119.79935 * 180.02562 * 14 13 12
39 39 H 1.07999 * 119.95777 * 180.02562 * 15 14 13
40 40 H 0.97002 * 119.99911 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4487 1.7036 -1.4208
5 6 1.6552 2.5242 -2.0192
6 6 1.9882 2.9033 -3.4469
7 16 3.1942 1.6042 -3.9340
8 6 3.6465 1.1978 -2.1971
9 6 2.1388 -1.1672 0.0005
10 8 3.3515 -1.1692 -0.0886
11 6 1.4051 -2.4425 0.1090
12 6 0.3606 -2.5763 1.0265
13 6 -0.3169 -3.7722 1.1275
14 6 0.0288 -4.8426 0.3181
15 6 1.0550 -4.7233 -0.5972
16 6 1.7492 -3.5266 -0.7120
17 8 2.7575 -3.4077 -1.6097
18 6 2.9692 -4.4529 -2.4343
19 1 2.4039 -5.3643 -2.3071
20 6 3.9133 -4.3581 -3.4460
21 7 4.6016 -3.2482 -3.6011
22 14 4.2072 -5.8067 -4.5882
23 1 2.9478 -6.1373 -5.3024
24 1 5.2578 -5.4528 -5.5761
25 1 4.6490 -6.9812 -3.7943
26 1 -0.3634 0.0566 1.0260
27 1 -0.3633 0.8603 -0.5622
28 1 -0.3634 -0.9170 -0.4641
29 1 1.6084 2.0284 0.5137
30 1 3.1498 1.1384 0.5138
31 1 0.7850 2.9256 -1.5212
32 1 1.0990 2.8613 -4.0759
33 1 2.4431 3.8930 -3.4883
34 1 4.5525 1.7243 -1.8970
35 1 3.7632 0.1215 -2.0706
36 1 0.0872 -1.7449 1.6593
37 1 -1.1214 -3.8757 1.8405
38 1 -0.5081 -5.7758 0.4040
39 1 1.3182 -5.5620 -1.2247
40 1 5.2615 -3.1817 -4.3089
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001118789429.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:15:39
Heat of formation + Delta-G solvation = -24.273171 kcal
Electronic energy + Delta-G solvation = -24850.828656 eV
Core-core repulsion = 21336.631576 eV
Total energy + Delta-G solvation = -3514.197080 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.45405 -40.10867 -38.28657 -37.95733 -35.98134 -34.33815 -32.35895 -30.65139
-30.54824 -28.74505 -27.56122 -27.35450 -25.60731 -23.78691 -23.10677 -20.87199
-19.88778 -19.38673 -18.77441 -18.03049 -17.64754 -17.23209 -16.63767 -16.42948
-16.14682 -15.90314 -15.57907 -15.40794 -15.26195 -15.00572 -14.43690 -14.27731
-14.20766 -14.00346 -13.71175 -13.58094 -13.31704 -12.98514 -12.93788 -12.76074
-12.62053 -12.55423 -12.38362 -12.31493 -12.16307 -11.47234 -11.42531 -10.83601
-10.74080 -10.12597 -9.78010 -9.60898 -9.03340 -8.86457 -8.47085 -6.17100
0.23743 0.73160 0.76785 0.83513 1.28597 1.36046 1.41340 1.46282
1.91653 2.13230 2.31974 2.83916 3.17833 3.43904 3.46295 3.69015
3.82907 4.10439 4.16693 4.24929 4.31028 4.35191 4.36767 4.41468
4.50452 4.56789 4.63570 4.65338 4.70281 4.80920 4.97391 4.99403
5.07134 5.15443 5.22023 5.51046 5.56653 5.63175 5.70464 5.71999
5.93667 6.18422 6.44447 6.93701 7.35903 7.76978 8.72946
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.009548 B = 0.006178 C = 0.004065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2931.810337 B = 4531.358605 C = 6886.955183
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.073 3.927
2 N -0.609 5.609
3 C 0.167 3.833
4 C -0.156 4.156
5 C -0.127 4.127
6 C -0.026 4.026
7 S -0.374 6.374
8 C -0.019 4.019
9 C 0.561 3.439
10 O -0.573 6.573
11 C -0.235 4.235
12 C -0.031 4.031
13 C -0.196 4.196
14 C -0.046 4.046
15 C -0.256 4.256
16 C 0.145 3.855
17 O -0.205 6.205
18 C -0.422 4.422
19 H 0.105 0.895
20 C -0.021 4.021
21 N -0.905 5.905
22 Si 1.017 2.983
23 H -0.253 1.253
24 H -0.275 1.275
25 H -0.254 1.254
26 H 0.092 0.908
27 H 0.091 0.909
28 H 0.060 0.940
29 H 0.142 0.858
30 H 0.067 0.933
31 H 0.185 0.815
32 H 0.126 0.874
33 H 0.127 0.873
34 H 0.097 0.903
35 H 0.064 0.936
36 H 0.160 0.840
37 H 0.164 0.836
38 H 0.152 0.848
39 H 0.120 0.880
40 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.828 10.729 8.429 20.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 N -0.342 5.342
3 C 0.044 3.956
4 C -0.159 4.159
5 C -0.147 4.147
6 C -0.172 4.172
7 S -0.148 6.148
8 C -0.167 4.167
9 C 0.351 3.649
10 O -0.452 6.452
11 C -0.239 4.239
12 C -0.049 4.049
13 C -0.214 4.214
14 C -0.064 4.064
15 C -0.275 4.275
16 C 0.091 3.909
17 O -0.109 6.109
18 C -0.498 4.498
19 H 0.122 0.878
20 C -0.220 4.220
21 N -0.541 5.541
22 Si 0.836 3.164
23 H -0.177 1.177
24 H -0.200 1.200
25 H -0.178 1.178
26 H 0.110 0.890
27 H 0.110 0.890
28 H 0.079 0.921
29 H 0.159 0.841
30 H 0.085 0.915
31 H 0.202 0.798
32 H 0.144 0.856
33 H 0.145 0.855
34 H 0.115 0.885
35 H 0.083 0.917
36 H 0.178 0.822
37 H 0.182 0.818
38 H 0.169 0.831
39 H 0.138 0.862
40 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -13.479 10.573 7.079 18.536
hybrid contribution 0.909 -0.655 -0.093 1.125
sum -12.570 9.918 6.986 17.469
Atomic orbital electron populations
1.22181 0.76999 1.03861 1.03742 1.47794 1.08347 1.04252 1.73827
1.20351 0.98474 0.85570 0.91235 1.21904 0.95466 0.99463 0.99035
1.22850 0.99841 0.97404 0.94567 1.23313 0.99051 0.98168 0.96681
1.88558 1.58149 1.51784 1.16315 1.22960 1.00666 1.03494 0.89575
1.18570 0.86546 0.84753 0.75006 1.90767 1.16441 1.87705 1.50262
1.19187 1.05063 0.93025 1.06640 1.21339 0.90375 0.99226 0.93983
1.21172 1.04017 0.92676 1.03574 1.21399 0.93248 0.99919 0.91822
1.21270 1.02650 0.97406 1.06212 1.20009 0.87219 0.94033 0.89643
1.84036 1.43569 1.41685 1.41640 1.21858 1.23711 0.93453 1.10764
0.87781 1.26665 0.95019 1.01525 0.98795 1.70267 1.23322 1.28368
1.32182 0.84690 0.78971 0.75916 0.76870 1.17724 1.20027 1.17825
0.88963 0.89007 0.92141 0.84059 0.91493 0.79755 0.85593 0.85501
0.88460 0.91688 0.82234 0.81809 0.83060 0.86227 0.92309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.48 8.99 127.77 1.15 2.63 16
2 N -0.61 -18.83 2.86 -854.95 -2.44 -21.27 16
3 C 0.17 4.33 5.63 85.63 0.48 4.81 16
4 C -0.16 -4.50 5.52 -14.14 -0.08 -4.58 16
5 C -0.13 -2.62 9.88 28.00 0.28 -2.35 16
6 C -0.03 -0.57 7.46 71.47 0.53 -0.04 16
7 S -0.37 -14.43 23.55 -56.49 -1.33 -15.76 16
8 C -0.02 -0.78 7.32 71.47 0.52 -0.25 16
9 C 0.56 24.93 7.04 86.70 0.61 25.54 16
10 O -0.57 -32.04 14.62 8.95 0.13 -31.90 16
11 C -0.23 -10.09 4.89 -19.99 -0.10 -10.19 16
12 C -0.03 -0.93 7.77 22.52 0.17 -0.75 16
13 C -0.20 -5.15 10.02 22.25 0.22 -4.93 16
14 C -0.05 -1.43 10.03 22.30 0.22 -1.20 16
15 C -0.26 -11.05 9.16 22.36 0.20 -10.85 16
16 C 0.14 7.48 6.63 22.91 0.15 7.63 16
17 O -0.21 -13.15 8.65 -7.06 -0.06 -13.21 16
18 C -0.42 -25.88 9.49 67.93 0.64 -25.24 16
19 H 0.10 5.76 5.20 -2.91 -0.02 5.74 16
20 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16
21 N -0.91 -60.18 13.67 21.62 0.30 -59.89 16
22 Si 1.02 45.59 29.55 68.60 2.03 47.62 16
23 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16
24 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16
25 H -0.25 -10.59 7.11 99.48 0.71 -9.89 16
26 H 0.09 1.17 7.19 -2.39 -0.02 1.15 16
27 H 0.09 1.32 8.10 -2.38 -0.02 1.30 16
28 H 0.06 1.50 6.13 -2.38 -0.01 1.49 16
29 H 0.14 2.01 7.98 -2.39 -0.02 1.99 16
30 H 0.07 2.07 7.49 -2.39 -0.02 2.05 16
31 H 0.19 1.99 8.05 -2.91 -0.02 1.97 16
32 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16
33 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16
34 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16
35 H 0.06 3.52 6.78 -2.39 -0.02 3.50 16
36 H 0.16 3.36 6.32 -2.91 -0.02 3.34 16
37 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16
38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16
39 H 0.12 5.29 5.63 -2.91 -0.02 5.28 16
40 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16
Total: -1.00 -93.23 347.28 5.17 -88.05
By element:
Atomic # 1 Polarization: 25.87 SS G_CDS: 1.07 Total: 26.94 kcal
Atomic # 6 Polarization: -26.06 SS G_CDS: 5.49 Total: -20.57 kcal
Atomic # 7 Polarization: -79.01 SS G_CDS: -2.15 Total: -81.16 kcal
Atomic # 8 Polarization: -45.18 SS G_CDS: 0.07 Total: -45.11 kcal
Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal
Atomic # 16 Polarization: -14.43 SS G_CDS: -1.33 Total: -15.76 kcal
Total: -93.23 5.17 -88.05 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001118789429.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.779 kcal
(2) G-P(sol) polarization free energy of solvation -93.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds