Wall clock time and date at job start Tue Mar 31 2020 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39635 * 120.14619 * 143.05209 * 3 2 1 5 5 C 1.37942 * 119.84272 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15217 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.84335 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46656 * 90.00383 * 7 6 5 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47171 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99972 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00414 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00035 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47199 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99905 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00248 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99543 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46989 * 119.99837 * 20 18 16 23 23 H 1.48498 * 109.47077 * 239.99819 * 20 18 16 24 24 C 1.38358 * 120.30659 * 0.23660 * 6 5 4 25 25 C 1.37947 * 120.14898 * 359.48254 * 24 6 5 26 26 H 1.08000 * 120.07861 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.92373 * 179.97438 * 5 4 3 28 28 H 1.08990 * 109.47142 * 330.00368 * 7 6 5 29 29 H 1.09004 * 109.46726 * 210.00265 * 7 6 5 30 30 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 31 31 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 32 32 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 33 33 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 34 34 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 35 35 H 0.97001 * 119.99965 * 0.02562 * 11 10 9 36 36 H 1.09002 * 109.46671 * 299.99808 * 14 12 11 37 37 H 1.09000 * 109.47309 * 59.99969 * 14 12 11 38 38 H 0.97008 * 119.99956 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.92598 * 179.72003 * 24 6 5 40 40 H 1.08000 * 120.07643 * 180.25116 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.9660 -0.7258 5 6 4.6482 0.9604 -0.7218 6 6 5.3373 0.0010 -0.0013 7 6 6.8444 0.0011 -0.0024 8 7 7.3347 0.8331 1.1046 9 6 8.8032 0.8562 1.1354 10 6 9.2752 1.7311 2.2984 11 7 10.7397 1.7537 2.3294 12 6 11.3827 2.4661 3.2757 13 8 10.7491 3.0881 4.1019 14 6 12.8893 2.4898 3.3073 15 16 13.4477 3.5247 4.6833 16 6 15.1927 3.3772 4.4885 17 1 15.5978 2.7749 3.6889 18 6 16.0466 4.0352 5.3628 19 7 15.5528 4.7697 6.3370 20 14 17.8966 3.8794 5.1558 21 1 18.1927 3.0038 3.9935 22 1 18.4839 5.2238 4.9258 23 1 18.4838 3.2863 6.3840 24 6 4.6492 -0.9617 0.7156 25 6 3.2698 -0.9644 0.7251 26 1 2.7322 1.7146 -1.2896 27 1 5.1916 1.7062 -1.2831 28 1 7.2070 0.4039 -0.9479 29 1 7.2078 -1.0191 0.1212 30 1 6.9591 1.7678 1.0483 31 1 9.1799 -0.1581 1.2671 32 1 9.1799 1.2648 0.1977 33 1 8.8985 2.7453 2.1663 34 1 8.8986 1.3229 3.2364 35 1 11.2465 1.2566 1.6685 36 1 13.2658 1.4755 3.4398 37 1 13.2660 2.8976 2.3693 38 1 16.1496 5.2299 6.9479 39 1 5.1933 -1.7104 1.2722 40 1 2.7339 -1.7139 1.2885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:47 Heat of formation + Delta-G solvation = 13.587159 kcal Electronic energy + Delta-G solvation = -21333.227622 eV Core-core repulsion = 17852.965040 eV Total energy + Delta-G solvation = -3480.262582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16995 -39.21419 -37.39243 -36.57502 -34.48461 -32.44267 -32.32760 -31.66960 -30.03304 -28.08315 -25.71307 -25.37171 -23.36687 -22.45381 -22.40405 -20.38857 -19.46835 -17.89721 -16.96084 -16.37274 -16.32716 -15.90001 -15.82898 -15.13683 -14.96946 -14.85925 -14.80771 -14.41440 -14.11235 -14.09141 -13.82956 -13.60093 -13.24591 -13.14288 -12.90019 -12.66748 -12.54820 -12.23574 -11.97796 -11.68281 -11.63030 -11.48418 -11.08090 -11.03143 -10.76960 -9.82015 -9.60381 -9.49248 -9.38219 -9.09079 -8.95054 -8.92150 -8.24359 -6.51263 -6.22956 -3.93529 0.17682 0.77542 2.18745 2.39315 2.94856 3.07884 3.20622 3.23881 3.29169 3.33676 3.37050 3.59724 4.03954 4.18114 4.19138 4.25187 4.31645 4.59073 4.70986 4.73688 4.82143 5.02090 5.03485 5.12432 5.15019 5.18037 5.22077 5.40783 5.58921 5.60704 5.71851 5.72619 5.85089 5.88332 5.95498 6.11855 6.21722 6.39197 6.57688 6.83090 6.99482 7.58632 7.66178 8.34170 8.58734 9.22555 10.84543 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.001468 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.018192 B =19073.444730 C =19335.127133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C 0.254 3.746 3 C -0.031 4.031 4 C -0.070 4.070 5 C -0.114 4.114 6 C -0.053 4.053 7 C 0.094 3.906 8 N -0.681 5.681 9 C 0.049 3.951 10 C 0.122 3.878 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.096 4.096 25 C -0.070 4.070 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.347 0.653 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.397 0.603 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.137 0.863 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.814 -12.531 -17.904 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.093 5.093 2 C -0.061 4.061 3 C -0.034 4.034 4 C -0.090 4.090 5 C -0.133 4.133 6 C -0.054 4.054 7 C -0.035 4.035 8 N -0.313 5.313 9 C -0.080 4.080 10 C -0.002 4.002 11 N -0.395 5.395 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.115 4.115 25 C -0.091 4.091 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.652 -11.873 -15.894 30.111 hybrid contribution 2.738 -0.453 -2.156 3.514 sum -19.914 -12.326 -18.050 29.569 Atomic orbital electron populations 1.81281 1.12120 1.07740 1.08182 1.25763 0.92722 0.93847 0.93812 1.16027 0.84250 0.99792 1.03360 1.21153 0.94232 0.96730 0.96898 1.21025 0.93594 0.98805 0.99844 1.20046 0.95540 0.94522 0.95311 1.20966 0.90099 0.99632 0.92796 1.60342 1.07468 1.17962 1.45486 1.22121 0.87640 1.00968 0.97264 1.21130 0.80532 0.99697 0.98881 1.45891 1.06516 1.53143 1.33932 1.20301 0.89807 0.77974 0.80111 1.90714 1.68292 1.42026 1.37908 1.23530 0.93404 1.06258 1.07195 1.85421 1.04576 1.60550 1.32851 1.22909 0.91057 1.35964 1.18453 0.90870 1.24992 0.99617 0.94493 0.94464 1.70028 1.35493 1.29122 1.15611 0.86117 0.83067 0.78079 0.78229 1.19621 1.20570 1.20561 1.21021 0.93237 0.98954 0.98284 1.21219 0.94361 0.96802 0.96675 0.84932 0.85010 0.93628 0.89443 0.83425 0.90060 0.94329 0.91776 0.90608 0.76899 0.89176 0.89231 0.92222 0.84555 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.35 18.54 41.84 0.78 -3.57 16 2 C 0.25 1.98 15.33 -22.47 -0.34 1.63 16 3 C -0.03 -0.17 5.73 -106.93 -0.61 -0.78 16 4 C -0.07 -0.31 9.76 -39.17 -0.38 -0.69 16 5 C -0.11 -0.44 9.68 -39.64 -0.38 -0.83 16 6 C -0.05 -0.23 5.40 -104.53 -0.56 -0.80 16 7 C 0.09 0.39 5.81 -4.97 -0.03 0.36 16 8 N -0.68 -3.98 6.49 -115.05 -0.75 -4.73 16 9 C 0.05 0.32 5.80 -3.82 -0.02 0.30 16 10 C 0.12 1.26 5.93 -4.05 -0.02 1.24 16 11 N -0.74 -9.01 5.56 -60.29 -0.33 -9.34 16 12 C 0.53 9.58 7.85 -10.98 -0.09 9.49 16 13 O -0.52 -11.52 15.86 5.55 0.09 -11.43 16 14 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.08 9.50 30.94 0.29 -14.78 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 20 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 C -0.10 -0.42 9.68 -39.64 -0.38 -0.81 16 25 C -0.07 -0.32 9.76 -39.17 -0.38 -0.71 16 26 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 27 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 28 H 0.05 0.16 8.08 -51.93 -0.42 -0.26 16 29 H 0.09 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.35 1.93 8.72 -39.29 -0.34 1.58 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 35 H 0.40 3.56 8.47 -40.82 -0.35 3.21 16 36 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 37 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 373.54 15.07 5.63 5.63 Total: -1.00 -35.88 373.54 -9.19 -45.07 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.30 Total: -1.54 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.79 Total: -7.16 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.43 Total: -42.86 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.88 -9.19 -45.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.656 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds