Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39635 * 120.14619 * 143.05209 * 3 2 1 5 5 C 1.37942 * 119.84272 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.15217 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.84335 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46656 * 90.00383 * 7 6 5 9 9 C 1.46906 * 110.99573 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.47171 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99972 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00414 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00035 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47199 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99905 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00248 * 359.97438 * 16 15 14 18 18 C 1.38803 * 119.99997 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99543 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46989 * 119.99837 * 20 18 16 23 23 H 1.48498 * 109.47077 * 239.99819 * 20 18 16 24 24 C 1.38358 * 120.30659 * 0.23660 * 6 5 4 25 25 C 1.37947 * 120.14898 * 359.48254 * 24 6 5 26 26 H 1.08000 * 120.07861 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.92373 * 179.97438 * 5 4 3 28 28 H 1.08990 * 109.47142 * 330.00368 * 7 6 5 29 29 H 1.09004 * 109.46726 * 210.00265 * 7 6 5 30 30 H 1.00896 * 111.00219 * 303.95295 * 8 7 6 31 31 H 1.09002 * 109.46991 * 299.99841 * 9 8 7 32 32 H 1.09000 * 109.47202 * 60.00133 * 9 8 7 33 33 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 34 34 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 35 35 H 0.97001 * 119.99965 * 0.02562 * 11 10 9 36 36 H 1.09002 * 109.46671 * 299.99808 * 14 12 11 37 37 H 1.09000 * 109.47309 * 59.99969 * 14 12 11 38 38 H 0.97008 * 119.99956 * 180.02562 * 19 18 16 39 39 H 1.07993 * 119.92598 * 179.72003 * 24 6 5 40 40 H 1.08000 * 120.07643 * 180.25116 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.9660 -0.7258 5 6 4.6482 0.9604 -0.7218 6 6 5.3373 0.0010 -0.0013 7 6 6.8444 0.0011 -0.0024 8 7 7.3347 0.8331 1.1046 9 6 8.8032 0.8562 1.1354 10 6 9.2752 1.7311 2.2984 11 7 10.7397 1.7537 2.3294 12 6 11.3827 2.4661 3.2757 13 8 10.7491 3.0881 4.1019 14 6 12.8893 2.4898 3.3073 15 16 13.4477 3.5247 4.6833 16 6 15.1927 3.3772 4.4885 17 1 15.5978 2.7749 3.6889 18 6 16.0466 4.0352 5.3628 19 7 15.5528 4.7697 6.3370 20 14 17.8966 3.8794 5.1558 21 1 18.1927 3.0038 3.9935 22 1 18.4839 5.2238 4.9258 23 1 18.4838 3.2863 6.3840 24 6 4.6492 -0.9617 0.7156 25 6 3.2698 -0.9644 0.7251 26 1 2.7322 1.7146 -1.2896 27 1 5.1916 1.7062 -1.2831 28 1 7.2070 0.4039 -0.9479 29 1 7.2078 -1.0191 0.1212 30 1 6.9591 1.7678 1.0483 31 1 9.1799 -0.1581 1.2671 32 1 9.1799 1.2648 0.1977 33 1 8.8985 2.7453 2.1663 34 1 8.8986 1.3229 3.2364 35 1 11.2465 1.2566 1.6685 36 1 13.2658 1.4755 3.4398 37 1 13.2660 2.8976 2.3693 38 1 16.1496 5.2299 6.9479 39 1 5.1933 -1.7104 1.2722 40 1 2.7339 -1.7139 1.2885 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -12.013574 kcal Electronic energy + Delta-G solvation = -21334.337753 eV Core-core repulsion = 17852.965040 eV Total energy + Delta-G solvation = -3481.372713 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62418 -40.45906 -37.99373 -37.25273 -35.47153 -34.56389 -32.94304 -31.98164 -31.25393 -28.97219 -27.63773 -26.16242 -23.68404 -23.10246 -22.83384 -21.72352 -19.87980 -19.82005 -17.86282 -17.47915 -17.10432 -16.86112 -16.63836 -16.53462 -15.96467 -15.90673 -15.46737 -15.26309 -14.96385 -14.90010 -14.63687 -14.40486 -14.32562 -14.15820 -13.85826 -13.56525 -13.31884 -13.13682 -13.10950 -12.89995 -12.61095 -12.53091 -12.34009 -12.14434 -11.90275 -11.68552 -11.14029 -10.96358 -10.24177 -10.08946 -9.91488 -9.80913 -9.33831 -8.64429 -8.32870 -6.10683 -0.22128 0.46879 1.29349 1.43218 1.49437 1.58692 1.60075 1.64857 1.89426 2.25886 2.30624 2.86150 2.89919 3.01674 3.32852 3.51664 3.84531 3.92903 3.95534 4.02343 4.11063 4.19828 4.35038 4.42441 4.44306 4.54906 4.57668 4.72815 4.74879 4.90692 5.00256 5.01842 5.12887 5.28604 5.39055 5.44251 5.45563 5.63980 5.89869 6.00979 6.22108 6.41228 6.41977 6.54824 7.08828 7.28956 8.76613 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.047687 B = 0.001468 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.018192 B =19073.444730 C =19335.127133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.278 3.722 3 C -0.048 4.048 4 C -0.070 4.070 5 C -0.114 4.114 6 C -0.054 4.054 7 C 0.097 3.903 8 N -0.692 5.692 9 C 0.064 3.936 10 C 0.122 3.878 11 N -0.710 5.710 12 C 0.533 3.467 13 O -0.568 6.568 14 C -0.129 4.129 15 S -0.155 6.155 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.013 3.987 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.255 1.255 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.102 4.102 25 C -0.071 4.071 26 H 0.144 0.856 27 H 0.151 0.849 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.348 0.652 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.147 0.853 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.292 -13.980 -20.283 30.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.036 4.036 3 C -0.051 4.051 4 C -0.090 4.090 5 C -0.132 4.132 6 C -0.055 4.055 7 C -0.031 4.031 8 N -0.324 5.324 9 C -0.066 4.066 10 C -0.002 4.002 11 N -0.365 5.365 12 C 0.318 3.682 13 O -0.446 6.446 14 C -0.280 4.280 15 S 0.072 5.928 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.549 5.549 20 Si 0.820 3.180 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.121 4.121 25 C -0.092 4.092 26 H 0.162 0.838 27 H 0.169 0.831 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.255 0.745 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.165 0.835 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.145 -13.370 -18.336 31.017 hybrid contribution 2.203 -0.060 -1.489 2.660 sum -18.942 -13.430 -19.825 30.532 Atomic orbital electron populations 1.81293 1.13662 1.09672 1.10253 1.26109 0.93026 0.92254 0.92213 1.16147 0.83012 1.01098 1.04874 1.21337 0.94676 0.96497 0.96486 1.21241 0.93327 0.98981 0.99674 1.20190 0.95879 0.94416 0.95014 1.20991 0.89687 0.99722 0.92744 1.60312 1.07007 1.18378 1.46718 1.21961 0.88157 1.00542 0.95900 1.21233 0.78801 1.00165 0.99990 1.45588 1.07582 1.51050 1.32305 1.20067 0.89142 0.78287 0.80668 1.90703 1.68913 1.44648 1.40326 1.23373 0.94708 1.05521 1.04416 1.85620 1.05795 1.63532 1.37884 1.23247 0.91162 1.36063 1.18796 0.89785 1.26121 1.05292 0.93833 0.93881 1.70194 1.37558 1.30327 1.16787 0.84908 0.75916 0.78409 0.78723 1.17888 1.20026 1.20050 1.21194 0.93092 0.99372 0.98424 1.21359 0.94693 0.96701 0.96418 0.83816 0.83130 0.92208 0.88775 0.83301 0.89009 0.92577 0.92630 0.92473 0.74481 0.87058 0.87015 0.92038 0.83515 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.17 18.54 19.00 0.35 -9.82 16 2 C 0.28 4.36 15.33 88.33 1.35 5.71 16 3 C -0.05 -0.49 5.73 -21.36 -0.12 -0.61 16 4 C -0.07 -0.50 9.76 22.54 0.22 -0.28 16 5 C -0.11 -0.61 9.68 22.23 0.22 -0.39 16 6 C -0.05 -0.33 5.40 -19.80 -0.11 -0.44 16 7 C 0.10 0.48 5.81 85.56 0.50 0.98 16 8 N -0.69 -6.15 6.49 -517.91 -3.36 -9.51 16 9 C 0.06 0.61 5.80 86.30 0.50 1.11 16 10 C 0.12 2.30 5.93 86.38 0.51 2.81 16 11 N -0.71 -15.60 5.56 -463.06 -2.57 -18.17 16 12 C 0.53 18.66 7.85 87.66 0.69 19.35 16 13 O -0.57 -25.79 15.86 -3.04 -0.05 -25.84 16 14 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 15 S -0.16 -8.50 20.57 -56.49 -1.16 -9.66 16 16 C -0.54 -30.59 9.50 67.96 0.65 -29.95 16 17 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 18 C 0.01 0.75 5.49 84.86 0.47 1.22 16 19 N -0.91 -55.60 13.22 21.65 0.29 -55.32 16 20 Si 1.00 42.89 29.55 68.60 2.03 44.92 16 21 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 C -0.10 -0.70 9.68 22.23 0.22 -0.48 16 25 C -0.07 -0.58 9.76 22.54 0.22 -0.36 16 26 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.15 0.21 8.06 -2.91 -0.02 0.19 16 28 H 0.06 0.16 8.08 -2.39 -0.02 0.14 16 29 H 0.09 0.37 8.08 -2.38 -0.02 0.36 16 30 H 0.35 3.01 8.72 -89.70 -0.78 2.23 16 31 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.42 5.90 8.47 -92.71 -0.79 5.11 16 36 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 37 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 38 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 39 H 0.15 0.66 8.06 -2.91 -0.02 0.63 16 40 H 0.14 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -81.07 373.54 0.78 -80.29 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -0.49 Total: 8.85 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.74 Total: -5.76 kcal Atomic # 7 Polarization: -87.52 SS G_CDS: -5.30 Total: -92.81 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.05 Total: -25.84 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -81.07 0.78 -80.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.281 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds