Wall clock time and date at job start Tue Mar 31 2020 12:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00109 * 2 1 4 4 H 1.48508 * 109.47134 * 239.99732 * 3 2 1 5 5 H 1.48501 * 109.47079 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47518 * 119.99630 * 3 2 1 7 7 C 1.39934 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00031 * 190.47998 * 7 2 1 9 9 C 1.41404 * 120.00102 * 10.48985 * 7 2 1 10 10 C 1.40779 * 120.20835 * 208.90354 * 9 7 2 11 11 C 1.37649 * 119.89152 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.32449 * 359.72841 * 11 10 9 13 13 C 1.39276 * 120.42590 * 0.54385 * 12 11 10 14 14 N 1.39825 * 119.95324 * 179.72629 * 13 12 11 15 15 C 1.34780 * 119.99660 * 323.94890 * 14 13 12 16 16 O 1.21556 * 120.00128 * 4.56204 * 15 14 13 17 17 C 1.47871 * 119.99778 * 184.56011 * 15 14 13 18 18 N 1.32392 * 120.63786 * 354.74926 * 17 15 14 19 19 N 1.28091 * 123.18056 * 180.02562 * 18 17 15 20 20 C 1.31803 * 123.49302 * 359.40687 * 19 18 17 21 21 C 1.40414 * 119.14128 * 0.86772 * 20 19 18 22 22 C 1.40233 * 122.73521 * 179.15610 * 21 20 19 23 23 C 1.36257 * 119.36709 * 180.02562 * 22 21 20 24 24 C 1.39381 * 121.07387 * 0.02562 * 23 22 21 25 25 C 1.36370 * 121.08672 * 359.97438 * 24 23 22 26 26 C 1.39831 * 119.41750 * 0.27952 * 25 24 23 27 27 C 1.38318 * 120.09603 * 359.46041 * 13 12 11 28 28 H 0.97001 * 119.99557 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.05561 * 359.97438 * 10 9 7 30 30 H 1.07999 * 119.84034 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.78696 * 180.29990 * 12 11 10 32 32 H 0.96998 * 120.00282 * 143.95294 * 14 13 12 33 33 H 1.07996 * 120.42312 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.31458 * 0.04950 * 22 21 20 35 35 H 1.07992 * 119.46272 * 179.97438 * 23 22 21 36 36 H 1.07999 * 119.45553 * 179.97438 * 24 23 22 37 37 H 1.07997 * 120.29013 * 179.97438 * 25 24 23 38 38 H 1.07995 * 120.15805 * 180.24704 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0962 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0745 -1.2197 0.1707 9 6 1.3186 -2.4263 -0.2219 10 6 1.7952 -3.6249 0.3422 11 6 1.1194 -4.8035 0.1210 12 6 -0.0316 -4.8157 -0.6497 13 6 -0.5119 -3.6387 -1.2188 14 7 -1.6714 -3.6634 -1.9998 15 6 -1.9257 -4.7212 -2.7953 16 8 -1.1912 -5.6895 -2.7722 17 6 -3.0982 -4.7040 -3.6961 18 7 -3.9638 -3.7029 -3.6578 19 7 -4.9952 -3.6386 -4.4146 20 6 -5.2949 -4.5535 -5.3148 21 6 -4.4608 -5.6744 -5.4545 22 6 -4.7176 -6.7006 -6.3751 23 6 -3.8619 -7.7581 -6.4527 24 6 -2.7377 -7.8356 -5.6324 25 6 -2.4582 -6.8554 -4.7265 26 6 -3.3172 -5.7577 -4.6153 27 6 0.1534 -2.4445 -1.0080 28 1 -0.4849 0.8401 -0.0004 29 1 2.6902 -3.6199 0.9467 30 1 1.4860 -5.7226 0.5537 31 1 -0.5577 -5.7445 -0.8137 32 1 -2.2928 -2.9192 -1.9691 33 1 -6.1781 -4.4491 -5.9275 34 1 -5.5851 -6.6530 -7.0166 35 1 -4.0583 -8.5495 -7.1608 36 1 -2.0771 -8.6860 -5.7157 37 1 -1.5837 -6.9287 -4.0970 38 1 -0.2204 -1.5306 -1.4455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128981802.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:12 Heat of formation + Delta-G solvation = 69.371849 kcal Electronic energy + Delta-G solvation = -24780.672277 eV Core-core repulsion = 21167.384749 eV Total energy + Delta-G solvation = -3613.287528 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66227 -39.58348 -38.24354 -37.26572 -34.43027 -33.62771 -33.22316 -32.01495 -30.70982 -29.54497 -28.51447 -25.83675 -25.22817 -24.48346 -23.24081 -21.72284 -21.11748 -20.01750 -18.60548 -18.33486 -17.59248 -17.35979 -16.33003 -15.71312 -15.50858 -15.20118 -14.85322 -14.76344 -14.68409 -14.22956 -14.14619 -13.65375 -13.09014 -12.81920 -12.77914 -12.56358 -12.37172 -11.83551 -11.67094 -11.58457 -11.21859 -11.10541 -10.85061 -10.69147 -10.64199 -10.05043 -9.89258 -9.76928 -9.63388 -9.50722 -9.19719 -9.00483 -8.73163 -7.35783 -7.06928 -6.65664 -4.38678 -0.24542 0.36197 1.36030 2.39788 2.74107 2.88637 3.08989 3.11668 3.14886 3.20698 3.34882 3.78529 3.83487 3.96120 4.11834 4.26940 4.41213 4.46958 4.66904 4.76386 4.89569 4.95735 5.24653 5.38459 5.49740 5.63991 5.67714 5.92367 6.09163 6.12584 6.24769 6.45082 6.61431 6.65865 6.85223 7.00032 7.06273 7.26001 7.54251 7.62396 7.88742 8.00560 8.06045 8.28161 8.44251 8.54389 8.66688 8.89311 8.93059 10.24943 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019307 B = 0.003156 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.920812 B = 8868.717122 C = 9911.946226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.220 4.220 11 C -0.090 4.090 12 C -0.221 4.221 13 C 0.133 3.867 14 N -0.631 5.631 15 C 0.568 3.432 16 O -0.514 6.514 17 C 0.078 3.922 18 N -0.230 5.230 19 N -0.263 5.263 20 C 0.096 3.904 21 C -0.086 4.086 22 C -0.099 4.099 23 C -0.096 4.096 24 C -0.105 4.105 25 C -0.087 4.087 26 C -0.048 4.048 27 C -0.168 4.168 28 H 0.280 0.720 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.180 0.820 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.177 0.823 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -10.859 -12.583 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.240 4.240 11 C -0.109 4.109 12 C -0.242 4.242 13 C 0.042 3.958 14 N -0.274 5.274 15 C 0.352 3.648 16 O -0.390 6.390 17 C -0.079 4.079 18 N -0.067 5.067 19 N -0.094 5.094 20 C -0.078 4.078 21 C -0.093 4.093 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.106 4.106 26 C -0.055 4.055 27 C -0.189 4.189 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.197 0.803 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.194 0.806 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.269 -9.799 -11.790 18.452 hybrid contribution 0.204 -0.159 -0.734 0.778 sum -10.065 -9.958 -12.524 18.903 Atomic orbital electron populations 1.69760 1.07367 1.29124 1.36815 1.25867 0.94858 1.01155 0.92378 0.86323 0.79975 0.80274 0.79835 1.18980 1.20386 1.19086 1.19489 0.95838 0.90309 1.43816 0.90438 1.17367 0.90843 0.92248 0.88001 1.21124 1.03031 0.93420 1.06399 1.20439 0.95446 0.96589 0.98423 1.20441 1.01023 0.96425 1.06294 1.17664 0.87409 0.95694 0.95076 1.43299 1.23316 1.20642 1.40131 1.17448 0.83270 0.84005 0.80084 1.90612 1.48186 1.32819 1.67354 1.23132 0.96489 0.92323 0.96006 1.72787 0.98345 1.19620 1.15925 1.72659 1.10094 1.23883 1.02802 1.24810 0.98450 0.89460 0.95126 1.18916 0.95553 0.97081 0.97754 1.20920 1.00228 0.93129 0.97660 1.21163 0.94098 0.97886 0.98345 1.21285 0.97043 0.99152 0.94941 1.22124 0.99937 0.91094 0.97400 1.18630 0.95551 0.95910 0.95449 1.21187 0.98892 0.95258 1.03593 0.90902 0.88720 0.88881 0.87487 0.74804 0.80297 0.84264 0.85001 0.84781 0.80593 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.60 10.84 55.55 0.60 -20.00 16 2 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 3 Si 0.91 18.77 29.57 -169.99 -5.03 13.75 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.46 -12.23 9.06 -37.74 -0.34 -12.57 16 8 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 9 C 0.12 3.14 5.55 -106.85 -0.59 2.55 16 10 C -0.22 -5.40 9.79 -38.84 -0.38 -5.78 16 11 C -0.09 -2.07 10.02 -39.69 -0.40 -2.46 16 12 C -0.22 -5.16 8.69 -39.09 -0.34 -5.50 16 13 C 0.13 3.14 6.27 -83.80 -0.53 2.62 16 14 N -0.63 -12.85 5.32 -10.76 -0.06 -12.91 16 15 C 0.57 10.80 7.62 -12.32 -0.09 10.71 16 16 O -0.51 -10.33 11.07 5.32 0.06 -10.27 16 17 C 0.08 1.29 6.90 -82.43 -0.57 0.72 16 18 N -0.23 -3.84 10.70 33.56 0.36 -3.48 16 19 N -0.26 -3.85 11.42 30.90 0.35 -3.50 16 20 C 0.10 1.03 11.20 -16.75 -0.19 0.85 16 21 C -0.09 -0.96 5.75 -106.85 -0.61 -1.57 16 22 C -0.10 -0.78 9.84 -39.55 -0.39 -1.17 16 23 C -0.10 -0.71 9.95 -39.87 -0.40 -1.11 16 24 C -0.10 -0.97 9.95 -39.83 -0.40 -1.37 16 25 C -0.09 -1.11 9.27 -39.66 -0.37 -1.48 16 26 C -0.05 -0.67 5.77 -106.56 -0.61 -1.29 16 27 C -0.17 -4.32 8.57 -38.67 -0.33 -4.65 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.11 2.42 6.28 -52.49 -0.33 2.09 16 32 H 0.42 7.92 8.21 -40.82 -0.34 7.58 16 33 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.18 2.57 5.12 -52.49 -0.27 2.30 16 38 H 0.13 3.32 6.22 -52.49 -0.33 3.00 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -30.27 330.01 -8.71 -38.98 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -3.34 Total: 12.20 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -6.63 Total: -19.75 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.26 Total: -39.89 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.27 -8.71 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128981802.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.355 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds