Wall clock time and date at job start Tue Mar 31 2020 13:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47397 * 300.00474 * 3 2 1 6 6 H 1.48498 * 109.47407 * 60.00350 * 3 2 1 7 7 C 1.39935 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99636 * 196.79272 * 7 2 1 9 9 C 1.41406 * 120.00218 * 16.79204 * 7 2 1 10 10 C 1.40779 * 120.21219 * 205.14473 * 9 7 2 11 11 C 1.37648 * 119.89696 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32104 * 359.73814 * 11 10 9 13 13 C 1.39283 * 120.42572 * 0.51707 * 12 11 10 14 14 N 1.39829 * 119.94569 * 179.76178 * 13 12 11 15 15 C 1.34772 * 120.00544 * 325.52975 * 14 13 12 16 16 O 1.21501 * 119.99775 * 354.89130 * 15 14 13 17 17 C 1.48304 * 120.00135 * 174.89583 * 15 14 13 18 18 C 1.40190 * 119.20663 * 179.97438 * 17 15 14 19 19 C 1.36611 * 119.70579 * 179.75978 * 18 17 15 20 20 C 1.40602 * 118.21224 * 0.50134 * 19 18 17 21 21 C 1.40734 * 121.37416 * 179.77831 * 20 19 18 22 22 C 1.36582 * 118.13290 * 179.70270 * 21 20 19 23 23 C 1.39424 * 119.84982 * 0.04315 * 22 21 20 24 24 N 1.31018 * 121.83661 * 359.95654 * 23 22 21 25 25 C 1.33858 * 121.42751 * 0.02562 * 24 23 22 26 26 N 1.31897 * 119.20710 * 0.02562 * 17 15 14 27 27 C 1.38310 * 120.09833 * 359.48422 * 13 12 11 28 28 H 0.96999 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.04972 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.83712 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.78745 * 180.27756 * 12 11 10 32 32 H 0.97013 * 119.99378 * 145.53306 * 14 13 12 33 33 H 1.08005 * 120.14614 * 0.02562 * 18 17 15 34 34 H 1.08004 * 120.89202 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.92948 * 359.70298 * 21 20 19 36 36 H 1.08002 * 120.07799 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.08592 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.16107 * 180.23228 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 1.8187 -3.6479 0.1213 11 6 1.1698 -4.8105 -0.2281 12 6 0.0499 -4.7687 -1.0422 13 6 -0.4260 -3.5521 -1.5252 14 7 -1.5545 -3.5220 -2.3504 15 6 -1.7790 -4.5252 -3.2220 16 8 -0.9552 -5.4080 -3.3574 17 6 -3.0314 -4.5514 -4.0159 18 6 -3.2475 -5.6025 -4.9180 19 6 -4.3998 -5.6394 -5.6509 20 6 -5.3319 -4.6013 -5.4766 21 6 -6.5384 -4.5706 -6.2005 22 6 -7.3989 -3.5343 -5.9746 23 6 -7.0675 -2.5465 -5.0481 24 7 -5.9433 -2.5786 -4.3761 25 6 -5.0552 -3.5652 -4.5481 26 7 -3.9146 -3.5848 -3.8569 27 6 0.2124 -2.3732 -1.1851 28 1 -0.4850 0.8400 0.0004 29 1 2.6895 -3.6852 0.7592 30 1 1.5329 -5.7593 0.1381 31 1 -0.4552 -5.6857 -1.3073 32 1 -2.1758 -2.7790 -2.2955 33 1 -2.5083 -6.3819 -5.0300 34 1 -4.5863 -6.4403 -6.3511 35 1 -6.7771 -5.3449 -6.9147 36 1 -8.3338 -3.4799 -6.5126 37 1 -7.7568 -1.7325 -4.8794 38 1 -0.1580 -1.4290 -1.5560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129089882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:52 Heat of formation + Delta-G solvation = 62.775970 kcal Electronic energy + Delta-G solvation = -24449.784013 eV Core-core repulsion = 20836.210466 eV Total energy + Delta-G solvation = -3613.573547 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49483 -39.76078 -37.94520 -36.97937 -34.58467 -34.16765 -33.25508 -31.44971 -31.17914 -29.52157 -28.46315 -25.82646 -25.19611 -24.50593 -22.89985 -21.88024 -21.15248 -19.84319 -19.02808 -18.12109 -17.53919 -17.24735 -16.37758 -15.72891 -15.47101 -15.22311 -14.80241 -14.71169 -14.49382 -14.30463 -14.27371 -13.61038 -13.42906 -13.09109 -12.76063 -12.40867 -12.26408 -12.17618 -11.61476 -11.40229 -11.26830 -11.09198 -10.90778 -10.71475 -10.62050 -10.12276 -9.72270 -9.62676 -9.34440 -9.23375 -9.19132 -9.16125 -8.94816 -7.36086 -7.00056 -6.66384 -4.33811 -0.20482 0.22488 1.57685 2.15131 2.74800 2.90608 3.10960 3.16206 3.20058 3.24050 3.42586 3.60656 3.95461 3.97136 4.07576 4.28839 4.35046 4.44632 4.65545 4.68028 4.81220 4.99890 5.05215 5.34461 5.53268 5.55317 5.69877 5.81137 5.87949 6.25866 6.29862 6.63575 6.69490 6.88095 7.02619 7.08543 7.09989 7.28577 7.59555 7.68133 7.83936 7.93841 8.05389 8.14440 8.34164 8.52664 8.72064 8.91898 8.97503 10.22877 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003144 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.945850 B = 8902.552427 C =10414.223503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.226 4.226 11 C -0.086 4.086 12 C -0.227 4.227 13 C 0.141 3.859 14 N -0.635 5.635 15 C 0.557 3.443 16 O -0.513 6.513 17 C 0.156 3.844 18 C -0.127 4.127 19 C -0.049 4.049 20 C -0.145 4.145 21 C -0.046 4.046 22 C -0.176 4.176 23 C 0.157 3.843 24 N -0.456 5.456 25 C 0.302 3.698 26 N -0.435 5.435 27 C -0.176 4.176 28 H 0.280 0.720 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.415 0.585 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 -6.408 -13.188 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.246 4.246 11 C -0.104 4.104 12 C -0.248 4.248 13 C 0.049 3.951 14 N -0.278 5.278 15 C 0.341 3.659 16 O -0.388 6.388 17 C -0.002 4.002 18 C -0.148 4.148 19 C -0.076 4.076 20 C -0.151 4.151 21 C -0.073 4.073 22 C -0.196 4.196 23 C -0.021 4.021 24 N -0.165 5.165 25 C 0.064 3.936 26 N -0.147 5.147 27 C -0.198 4.198 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.252 0.748 33 H 0.176 0.824 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.873 -5.530 -12.019 19.906 hybrid contribution -0.537 -0.086 -1.154 1.276 sum -15.410 -5.616 -13.173 21.036 Atomic orbital electron populations 1.69817 1.07510 1.29061 1.35731 1.25895 0.94747 1.01260 0.92271 0.86280 0.80984 0.81062 0.78491 1.18442 1.19787 1.20041 1.19560 0.97797 0.90945 1.40911 0.90277 1.17369 0.90534 0.92246 0.88187 1.21050 1.03831 0.92863 1.06852 1.20404 0.95561 0.96654 0.97820 1.20283 1.02075 0.95402 1.07043 1.17631 0.88266 0.95299 0.93895 1.43350 1.25264 1.23468 1.35736 1.17838 0.84660 0.83272 0.80170 1.90800 1.44489 1.37427 1.66057 1.21666 0.93574 0.90485 0.94479 1.21888 0.98473 0.99254 0.95189 1.21447 0.92042 0.96656 0.97457 1.19739 0.97370 0.97946 1.00009 1.21484 0.91533 0.97801 0.96464 1.22050 1.01410 0.95790 1.00349 1.23160 0.92255 0.96918 0.89725 1.67661 1.02164 1.22961 1.23689 1.19236 0.91970 0.90418 0.91985 1.67448 1.00948 1.24025 1.22295 1.21105 0.99723 0.95362 1.03574 0.90953 0.88779 0.88932 0.88086 0.74794 0.82404 0.83260 0.83855 0.83831 0.81446 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.63 10.94 55.55 0.61 -20.03 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 10 C -0.23 -5.69 9.79 -38.84 -0.38 -6.07 16 11 C -0.09 -2.03 10.02 -39.69 -0.40 -2.42 16 12 C -0.23 -5.51 8.66 -39.09 -0.34 -5.85 16 13 C 0.14 3.45 6.25 -83.79 -0.52 2.92 16 14 N -0.64 -13.45 5.31 -10.64 -0.06 -13.51 16 15 C 0.56 10.89 7.54 -12.12 -0.09 10.80 16 16 O -0.51 -11.02 14.02 5.36 0.08 -10.95 16 17 C 0.16 2.51 6.75 -82.97 -0.56 1.95 16 18 C -0.13 -1.58 9.54 -39.44 -0.38 -1.96 16 19 C -0.05 -0.47 9.89 -39.28 -0.39 -0.86 16 20 C -0.15 -1.58 5.75 -106.68 -0.61 -2.20 16 21 C -0.05 -0.33 9.90 -39.24 -0.39 -0.72 16 22 C -0.18 -1.13 10.04 -39.74 -0.40 -1.52 16 23 C 0.16 1.38 11.14 -17.46 -0.19 1.19 16 24 N -0.46 -6.28 10.43 -12.60 -0.13 -6.41 16 25 C 0.30 4.42 7.62 -157.91 -1.20 3.21 16 26 N -0.43 -7.27 9.57 -9.19 -0.09 -7.36 16 27 C -0.18 -4.65 8.60 -38.67 -0.33 -4.99 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 29 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.10 2.38 6.47 -52.49 -0.34 2.04 16 32 H 0.42 8.34 8.13 -40.81 -0.33 8.01 16 33 H 0.16 1.77 7.60 -52.48 -0.40 1.37 16 34 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 36 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 37 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.12 3.34 6.17 -52.49 -0.32 3.02 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -32.70 335.34 -10.26 -42.96 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -3.48 Total: 11.12 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -7.21 Total: -14.75 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.33 Total: -47.31 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.70 -10.26 -42.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129089882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.733 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds