Wall clock time and date at job start Tue Mar 31 2020 13:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47397 * 300.00474 * 3 2 1 6 6 H 1.48498 * 109.47407 * 60.00350 * 3 2 1 7 7 C 1.39935 * 119.99843 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99636 * 196.79272 * 7 2 1 9 9 C 1.41406 * 120.00218 * 16.79204 * 7 2 1 10 10 C 1.40779 * 120.21219 * 205.14473 * 9 7 2 11 11 C 1.37648 * 119.89696 * 180.02562 * 10 9 7 12 12 C 1.38521 * 120.32104 * 359.73814 * 11 10 9 13 13 C 1.39283 * 120.42572 * 0.51707 * 12 11 10 14 14 N 1.39829 * 119.94569 * 179.76178 * 13 12 11 15 15 C 1.34772 * 120.00544 * 325.52975 * 14 13 12 16 16 O 1.21501 * 119.99775 * 354.89130 * 15 14 13 17 17 C 1.48304 * 120.00135 * 174.89583 * 15 14 13 18 18 C 1.40190 * 119.20663 * 179.97438 * 17 15 14 19 19 C 1.36611 * 119.70579 * 179.75978 * 18 17 15 20 20 C 1.40602 * 118.21224 * 0.50134 * 19 18 17 21 21 C 1.40734 * 121.37416 * 179.77831 * 20 19 18 22 22 C 1.36582 * 118.13290 * 179.70270 * 21 20 19 23 23 C 1.39424 * 119.84982 * 0.04315 * 22 21 20 24 24 N 1.31018 * 121.83661 * 359.95654 * 23 22 21 25 25 C 1.33858 * 121.42751 * 0.02562 * 24 23 22 26 26 N 1.31897 * 119.20710 * 0.02562 * 17 15 14 27 27 C 1.38310 * 120.09833 * 359.48422 * 13 12 11 28 28 H 0.96999 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.08009 * 120.04972 * 359.97438 * 10 9 7 30 30 H 1.07992 * 119.83712 * 180.02562 * 11 10 9 31 31 H 1.07997 * 119.78745 * 180.27756 * 12 11 10 32 32 H 0.97013 * 119.99378 * 145.53306 * 14 13 12 33 33 H 1.08005 * 120.14614 * 0.02562 * 18 17 15 34 34 H 1.08004 * 120.89202 * 180.02562 * 19 18 17 35 35 H 1.08004 * 120.92948 * 359.70298 * 21 20 19 36 36 H 1.08002 * 120.07799 * 180.02562 * 22 21 20 37 37 H 1.07997 * 119.08592 * 179.97438 * 23 22 21 38 38 H 1.07997 * 120.16107 * 180.23228 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8835 2.3965 -1.2124 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 1.8187 -3.6479 0.1213 11 6 1.1698 -4.8105 -0.2281 12 6 0.0499 -4.7687 -1.0422 13 6 -0.4260 -3.5521 -1.5252 14 7 -1.5545 -3.5220 -2.3504 15 6 -1.7790 -4.5252 -3.2220 16 8 -0.9552 -5.4080 -3.3574 17 6 -3.0314 -4.5514 -4.0159 18 6 -3.2475 -5.6025 -4.9180 19 6 -4.3998 -5.6394 -5.6509 20 6 -5.3319 -4.6013 -5.4766 21 6 -6.5384 -4.5706 -6.2005 22 6 -7.3989 -3.5343 -5.9746 23 6 -7.0675 -2.5465 -5.0481 24 7 -5.9433 -2.5786 -4.3761 25 6 -5.0552 -3.5652 -4.5481 26 7 -3.9146 -3.5848 -3.8569 27 6 0.2124 -2.3732 -1.1851 28 1 -0.4850 0.8400 0.0004 29 1 2.6895 -3.6852 0.7592 30 1 1.5329 -5.7593 0.1381 31 1 -0.4552 -5.6857 -1.3073 32 1 -2.1758 -2.7790 -2.2955 33 1 -2.5083 -6.3819 -5.0300 34 1 -4.5863 -6.4403 -6.3511 35 1 -6.7771 -5.3449 -6.9147 36 1 -8.3338 -3.4799 -6.5126 37 1 -7.7568 -1.7325 -4.8794 38 1 -0.1580 -1.4290 -1.5560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129089882.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:51 Heat of formation + Delta-G solvation = 42.114698 kcal Electronic energy + Delta-G solvation = -24450.679953 eV Core-core repulsion = 20836.210466 eV Total energy + Delta-G solvation = -3614.469486 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.41272 -41.23709 -39.29803 -38.44163 -36.15674 -35.33616 -34.98349 -32.30652 -32.09524 -31.47975 -30.20980 -27.25980 -26.80576 -25.35360 -23.73110 -23.34474 -23.03620 -21.53364 -20.03553 -19.43516 -19.14595 -18.21336 -17.71409 -17.18591 -16.82751 -16.62383 -16.44122 -15.91111 -15.77904 -15.60987 -15.14073 -14.92657 -14.75131 -14.39046 -14.18483 -13.99743 -13.57140 -13.28635 -13.12646 -12.88259 -12.83577 -12.63669 -12.39502 -12.17887 -11.99466 -11.76894 -11.60730 -11.31594 -11.08799 -10.82083 -10.13402 -10.11274 -9.94796 -9.36831 -8.91490 -8.57973 -6.37800 -1.05898 -0.58020 0.66369 0.89940 1.00979 1.34315 1.38502 1.51777 1.54315 1.91569 2.09310 2.20917 2.50984 2.73525 3.02163 3.34071 3.39865 3.59318 3.68855 3.74461 3.91458 4.02576 4.22660 4.43321 4.45383 4.63427 4.67956 4.77368 4.82135 4.93290 5.03117 5.10509 5.11182 5.16695 5.19455 5.31479 5.58509 5.71121 5.78359 5.97537 6.05938 6.11305 6.29218 6.47372 6.65036 6.88820 6.92493 7.00569 7.08496 8.32770 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.003144 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.945850 B = 8902.552427 C =10414.223503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.092 3.908 10 C -0.243 4.243 11 C -0.081 4.081 12 C -0.238 4.238 13 C 0.143 3.857 14 N -0.643 5.643 15 C 0.558 3.442 16 O -0.537 6.537 17 C 0.129 3.871 18 C -0.142 4.142 19 C -0.019 4.019 20 C -0.152 4.152 21 C -0.038 4.038 22 C -0.160 4.160 23 C 0.159 3.841 24 N -0.516 5.516 25 C 0.268 3.732 26 N -0.475 5.475 27 C -0.202 4.202 28 H 0.288 0.712 29 H 0.107 0.893 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.416 0.584 33 H 0.165 0.835 34 H 0.204 0.796 35 H 0.193 0.807 36 H 0.193 0.807 37 H 0.197 0.803 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.301 -7.240 -15.780 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.524 4.524 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.262 4.262 11 C -0.099 4.099 12 C -0.259 4.259 13 C 0.051 3.949 14 N -0.286 5.286 15 C 0.345 3.655 16 O -0.414 6.414 17 C -0.026 4.026 18 C -0.163 4.163 19 C -0.045 4.045 20 C -0.157 4.157 21 C -0.064 4.064 22 C -0.179 4.179 23 C -0.017 4.017 24 N -0.226 5.226 25 C 0.030 3.970 26 N -0.188 5.188 27 C -0.224 4.224 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.145 0.855 31 H 0.125 0.875 32 H 0.253 0.747 33 H 0.183 0.817 34 H 0.221 0.779 35 H 0.210 0.790 36 H 0.210 0.790 37 H 0.214 0.786 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.525 -6.387 -14.617 23.698 hybrid contribution -0.031 0.166 -0.471 0.500 sum -17.556 -6.220 -15.088 23.970 Atomic orbital electron populations 1.69882 1.09026 1.30477 1.35601 1.26797 0.95530 1.04612 0.91174 0.85129 0.79473 0.76067 0.78849 1.17981 1.19196 1.18894 1.19832 0.98107 0.92005 1.42463 0.90122 1.17777 0.91140 0.93478 0.88691 1.21257 1.04654 0.92801 1.07537 1.20756 0.94761 0.97691 0.96702 1.20484 1.02649 0.95400 1.07381 1.17760 0.88682 0.94933 0.93554 1.43377 1.24549 1.24440 1.36243 1.18438 0.85753 0.81885 0.79438 1.90748 1.45847 1.37966 1.66813 1.21141 0.92466 0.92752 0.96278 1.21972 1.00312 0.98534 0.95510 1.22002 0.89686 0.96772 0.96077 1.20073 0.99247 0.96992 0.99386 1.22058 0.89421 0.98964 0.95946 1.22575 1.02701 0.93966 0.98689 1.23911 0.90877 0.98164 0.88777 1.67612 1.04133 1.24307 1.26577 1.19519 0.91713 0.92326 0.93479 1.67188 1.02474 1.25007 1.24170 1.21015 1.00832 0.95384 1.05131 0.90179 0.87479 0.85533 0.87543 0.74683 0.81726 0.77886 0.79002 0.79024 0.78581 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.51 10.94 21.82 0.24 -44.28 16 2 C 0.03 1.75 5.16 85.25 0.44 2.19 16 3 Si 0.98 39.46 29.59 68.60 2.03 41.49 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.49 -27.53 9.05 23.46 0.21 -27.32 16 8 H 0.08 4.30 7.90 -2.91 -0.02 4.27 16 9 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 10 C -0.24 -12.59 9.79 22.75 0.22 -12.37 16 11 C -0.08 -3.87 10.02 22.20 0.22 -3.65 16 12 C -0.24 -11.98 8.66 22.59 0.20 -11.78 16 13 C 0.14 7.46 6.25 38.13 0.24 7.69 16 14 N -0.64 -29.41 5.31 -305.87 -1.62 -31.03 16 15 C 0.56 23.33 7.54 86.92 0.66 23.98 16 16 O -0.54 -24.23 14.02 -3.72 -0.05 -24.28 16 17 C 0.13 4.38 6.75 42.29 0.29 4.67 16 18 C -0.14 -3.47 9.54 22.36 0.21 -3.26 16 19 C -0.02 -0.30 9.89 22.47 0.22 -0.08 16 20 C -0.15 -2.90 5.75 -21.20 -0.12 -3.02 16 21 C -0.04 -0.34 9.90 22.49 0.22 -0.12 16 22 C -0.16 -1.22 10.04 22.17 0.22 -0.99 16 23 C 0.16 2.40 11.14 85.10 0.95 3.35 16 24 N -0.52 -14.23 10.43 -193.76 -2.02 -16.25 16 25 C 0.27 7.88 7.62 135.12 1.03 8.91 16 26 N -0.47 -16.90 9.57 -183.00 -1.75 -18.65 16 27 C -0.20 -11.37 8.60 22.86 0.20 -11.17 16 28 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 29 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 30 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 31 H 0.11 5.18 6.47 -2.91 -0.02 5.16 16 32 H 0.42 18.48 8.13 -92.70 -0.75 17.72 16 33 H 0.17 3.64 7.60 -2.91 -0.02 3.61 16 34 H 0.20 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.19 -0.10 8.06 -2.91 -0.02 -0.13 16 36 H 0.19 -0.33 8.06 -2.91 -0.02 -0.36 16 37 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.11 6.27 6.17 -2.91 -0.02 6.25 16 Total: -1.00 -79.27 335.34 2.48 -76.78 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: 0.38 Total: 34.07 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.29 Total: -17.85 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -5.16 Total: -110.22 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Total: -79.27 2.48 -76.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129089882.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.899 kcal (2) G-P(sol) polarization free energy of solvation -79.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds