Wall clock time and date at job start Tue Mar 31 2020 13:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48502 * 109.46814 * 240.00082 * 3 2 1 5 5 H 1.48498 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47293 * 120.00297 * 3 2 1 7 7 C 1.39938 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99604 * 168.99681 * 7 2 1 9 9 C 1.41409 * 120.00357 * 348.98893 * 7 2 1 10 10 C 1.40776 * 120.20492 * 331.81193 * 9 7 2 11 11 C 1.37650 * 119.88652 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32392 * 359.97438 * 11 10 9 13 13 C 1.39266 * 120.42780 * 0.02590 * 12 11 10 14 14 N 1.39853 * 119.95140 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00010 * 146.35053 * 14 13 12 16 16 O 1.21575 * 120.00180 * 354.86888 * 15 14 13 17 17 C 1.47732 * 119.99877 * 174.86484 * 15 14 13 18 18 C 1.40632 * 119.76250 * 0.02562 * 17 15 14 19 19 C 1.35841 * 120.94513 * 180.25555 * 18 17 15 20 20 C 1.40423 * 119.95062 * 359.49466 * 19 18 17 21 21 N 1.33842 * 121.79630 * 180.24669 * 20 19 18 22 22 C 1.31167 * 120.32640 * 180.27348 * 21 20 19 23 23 N 1.32500 * 122.87494 * 359.95366 * 22 21 20 24 24 C 1.31783 * 121.59700 * 0.02562 * 23 22 21 25 25 C 1.40765 * 118.34567 * 0.02562 * 24 23 22 26 26 C 1.38652 * 119.76173 * 179.97438 * 17 15 14 27 27 C 1.38300 * 120.09685 * 0.22842 * 13 12 11 28 28 H 0.96998 * 119.99678 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.06219 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.83698 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.78462 * 179.97438 * 12 11 10 32 32 H 0.97005 * 119.99996 * 326.35618 * 14 13 12 33 33 H 1.07998 * 119.52572 * 359.97259 * 18 17 15 34 34 H 1.08003 * 120.02628 * 179.72566 * 19 18 17 35 35 H 1.07992 * 118.56361 * 179.97438 * 22 21 20 36 36 H 1.08004 * 120.82933 * 180.02562 * 24 23 22 37 37 H 1.08000 * 120.36162 * 0.02562 * 26 17 15 38 38 H 1.08004 * 120.16122 * 179.74495 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0962 1.6964 1.2124 7 6 2.0079 -1.2119 -0.0005 8 1 3.0730 -1.2204 -0.1791 9 6 1.3204 -2.4254 0.2328 10 6 0.1510 -2.4375 1.0165 11 6 -0.5133 -3.6223 1.2390 12 6 -0.0372 -4.8040 0.6950 13 6 1.1183 -4.8074 -0.0823 14 7 1.5905 -6.0062 -0.6263 15 6 2.2030 -6.0064 -1.8268 16 8 2.2627 -4.9821 -2.4790 17 6 2.8020 -7.2513 -2.3502 18 6 2.7297 -8.4333 -1.5918 19 6 3.2767 -9.5902 -2.0475 20 6 3.9164 -9.6186 -3.2972 21 7 4.4635 -10.7389 -3.7841 22 6 5.0589 -10.7314 -4.9529 23 7 5.1530 -9.6448 -5.7052 24 6 4.6474 -8.4910 -5.3180 25 6 3.9958 -8.4314 -4.0717 26 6 3.4305 -7.2460 -3.5860 27 6 1.8026 -3.6278 -0.3128 28 1 -0.4849 0.8401 0.0004 29 1 -0.2243 -1.5188 1.4424 30 1 -1.4102 -3.6307 1.8407 31 1 -0.5651 -5.7287 0.8755 32 1 1.4770 -6.8375 -0.1395 33 1 2.2361 -8.4201 -0.6312 34 1 3.2164 -10.4884 -1.4508 35 1 5.4909 -11.6513 -5.3181 36 1 4.7310 -7.6130 -5.9413 37 1 3.4846 -6.3373 -4.1671 38 1 2.7012 -3.6299 -0.9120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151774737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:45 Heat of formation + Delta-G solvation = 38.907036 kcal Electronic energy + Delta-G solvation = -24266.304203 eV Core-core repulsion = 20651.695622 eV Total energy + Delta-G solvation = -3614.608581 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48000 -41.34875 -39.23704 -38.21972 -36.29742 -35.25116 -34.90611 -32.74435 -31.76462 -31.67699 -29.87832 -27.27916 -26.52966 -25.69706 -23.94026 -23.17651 -22.71220 -21.77905 -19.82909 -19.71947 -19.17462 -18.39071 -17.51965 -16.94076 -16.85257 -16.49493 -16.27678 -15.92493 -15.85019 -15.63774 -15.13605 -14.92204 -14.75726 -14.56373 -14.27269 -13.96451 -13.65494 -13.24886 -13.11595 -12.87053 -12.81725 -12.57327 -12.26863 -12.22714 -12.16653 -11.96368 -11.60349 -11.28820 -10.99924 -10.70014 -10.47292 -10.35878 -9.61147 -9.36679 -8.73495 -8.57639 -6.38229 -1.07380 -0.60473 0.56821 0.90660 1.00142 1.36681 1.41758 1.48843 1.53590 2.04684 2.21525 2.24569 2.76092 2.93760 2.99741 3.11282 3.26479 3.43080 3.49749 3.73229 3.83216 3.91865 4.17013 4.46626 4.52745 4.58000 4.62608 4.72911 4.84246 5.01562 5.02374 5.10225 5.11908 5.21683 5.24469 5.33472 5.40879 5.73611 5.83844 5.86709 6.07843 6.11142 6.34131 6.54903 6.68907 6.94169 6.96232 7.00179 7.20016 8.37364 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.002675 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.342049 B =10464.908894 C =11525.227493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.086 3.914 10 C -0.192 4.192 11 C -0.094 4.094 12 C -0.244 4.244 13 C 0.155 3.845 14 N -0.648 5.648 15 C 0.546 3.454 16 O -0.558 6.558 17 C -0.142 4.142 18 C -0.044 4.044 19 C -0.104 4.104 20 C 0.160 3.840 21 N -0.527 5.527 22 C 0.304 3.696 23 N -0.544 5.544 24 C 0.218 3.782 25 C -0.188 4.188 26 C -0.002 4.002 27 C -0.231 4.231 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.422 0.578 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.228 0.772 36 H 0.208 0.792 37 H 0.152 0.848 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -18.637 -4.760 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.531 4.531 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.212 4.212 11 C -0.112 4.112 12 C -0.265 4.265 13 C 0.062 3.938 14 N -0.294 5.294 15 C 0.336 3.664 16 O -0.437 6.437 17 C -0.146 4.146 18 C -0.066 4.066 19 C -0.122 4.122 20 C 0.032 3.968 21 N -0.241 5.241 22 C 0.016 3.984 23 N -0.257 5.257 24 C 0.039 3.961 25 C -0.192 4.192 26 C -0.023 4.023 27 C -0.253 4.253 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.153 0.847 32 H 0.261 0.739 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.244 0.756 36 H 0.225 0.775 37 H 0.170 0.830 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.036 -18.801 -5.454 20.486 hybrid contribution -0.155 1.463 0.351 1.513 sum 5.881 -17.338 -5.103 19.006 Atomic orbital electron populations 1.69846 1.08703 1.30353 1.36909 1.26725 0.95706 1.04330 0.91375 0.85228 0.78723 0.75664 0.79900 1.18986 1.18803 1.18184 1.19735 0.95872 0.91972 1.45513 0.91546 1.17845 0.92524 0.92466 0.88795 1.21393 0.99431 0.97501 1.02835 1.20869 0.98884 0.92238 0.99258 1.20514 0.98093 0.98755 1.09144 1.17457 0.94216 0.85198 0.96948 1.43179 1.57290 1.09603 1.19357 1.18756 0.78137 0.88679 0.80870 1.90852 1.58823 1.35372 1.58629 1.19854 1.04089 0.93270 0.97367 1.21318 0.95460 0.89995 0.99783 1.20876 0.97717 0.99810 0.93837 1.19440 0.93689 0.88527 0.95122 1.68860 1.11861 1.27948 1.15400 1.25684 0.89725 0.97492 0.85489 1.68501 1.20768 1.00336 1.36076 1.24353 0.84437 0.96811 0.90538 1.19604 1.04886 0.95421 0.99276 1.21493 0.90020 0.97309 0.93500 1.20948 1.03367 0.93193 1.07792 0.90221 0.87625 0.85818 0.84703 0.73875 0.81558 0.81311 0.75622 0.77550 0.83012 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.01 10.81 21.83 0.24 -44.78 16 2 C 0.03 1.70 5.25 85.25 0.45 2.14 16 3 Si 0.98 40.04 29.57 68.60 2.03 42.07 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.50 -28.69 9.06 23.46 0.21 -28.48 16 8 H 0.07 3.74 7.87 -2.91 -0.02 3.72 16 9 C 0.09 4.90 5.55 -21.31 -0.12 4.78 16 10 C -0.19 -10.17 8.66 22.75 0.20 -9.97 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 12 C -0.24 -9.80 9.97 22.59 0.23 -9.58 16 13 C 0.15 6.68 6.26 38.12 0.24 6.92 16 14 N -0.65 -21.01 5.28 -306.34 -1.62 -22.62 16 15 C 0.55 18.67 7.49 86.75 0.65 19.32 16 16 O -0.56 -24.98 14.02 -3.95 -0.06 -25.03 16 17 C -0.14 -3.48 5.87 -20.08 -0.12 -3.60 16 18 C -0.04 -0.76 9.44 22.30 0.21 -0.55 16 19 C -0.10 -1.73 9.97 22.25 0.22 -1.51 16 20 C 0.16 3.27 6.62 40.29 0.27 3.54 16 21 N -0.53 -10.45 10.44 -193.54 -2.02 -12.47 16 22 C 0.30 5.04 12.23 180.86 2.21 7.25 16 23 N -0.54 -9.77 10.39 -198.60 -2.06 -11.83 16 24 C 0.22 3.65 11.16 85.32 0.95 4.60 16 25 C -0.19 -3.77 5.74 -21.31 -0.12 -3.89 16 26 C 0.00 -0.04 9.38 22.80 0.21 0.18 16 27 C -0.23 -12.16 8.39 22.85 0.19 -11.97 16 28 H 0.29 14.04 8.30 -92.71 -0.77 13.27 16 29 H 0.11 5.85 6.18 -2.91 -0.02 5.83 16 30 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 32 H 0.42 9.27 6.81 -92.70 -0.63 8.64 16 33 H 0.17 1.80 6.35 -2.91 -0.02 1.78 16 34 H 0.17 1.99 8.06 -2.91 -0.02 1.97 16 35 H 0.23 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.21 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.15 3.43 7.62 -2.91 -0.02 3.40 16 38 H 0.09 4.81 6.44 -2.91 -0.02 4.79 16 Total: -1.00 -74.88 332.75 3.11 -71.77 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.50 Total: 27.66 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 6.10 Total: -24.75 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -5.47 Total: -91.71 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.03 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -74.88 3.11 -71.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151774737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.674 kcal (2) G-P(sol) polarization free energy of solvation -74.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds