Wall clock time and date at job start Tue Mar 31 2020 13:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.47020 * 30.00454 * 3 2 1 6 6 H 1.48505 * 109.46665 * 150.00086 * 3 2 1 7 7 C 1.39926 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 196.79612 * 7 2 1 9 9 C 1.41410 * 119.99684 * 16.80176 * 7 2 1 10 10 C 1.40783 * 120.21190 * 25.16548 * 9 7 2 11 11 C 1.37650 * 119.88979 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32685 * 359.72284 * 11 10 9 13 13 C 1.39278 * 120.42581 * 0.55250 * 12 11 10 14 14 N 1.39837 * 119.94893 * 179.72088 * 13 12 11 15 15 C 1.34776 * 120.00352 * 325.52256 * 14 13 12 16 16 O 1.21567 * 119.99565 * 354.89301 * 15 14 13 17 17 C 1.47819 * 120.00102 * 174.89133 * 15 14 13 18 18 C 1.38891 * 121.07508 * 0.02562 * 17 15 14 19 19 C 1.39281 * 119.64346 * 179.97438 * 18 17 15 20 20 N 1.31021 * 121.75790 * 0.02562 * 19 18 17 21 21 C 1.33381 * 121.81197 * 359.95488 * 20 19 18 22 22 C 1.41034 * 121.06581 * 180.02562 * 21 20 19 23 23 C 1.36511 * 118.23564 * 180.02562 * 22 21 20 24 24 C 1.39347 * 120.00110 * 0.25778 * 23 22 21 25 25 N 1.31212 * 121.58919 * 359.48521 * 24 23 22 26 26 C 1.33247 * 121.31618 * 0.49972 * 25 24 23 27 27 C 1.38310 * 120.09774 * 359.45264 * 13 12 11 28 28 H 0.96999 * 120.00032 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05462 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.83308 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.78727 * 180.29811 * 12 11 10 32 32 H 0.96998 * 119.99713 * 145.52880 * 14 13 12 33 33 H 1.08007 * 120.17681 * 359.96034 * 18 17 15 34 34 H 1.07994 * 119.11777 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.88903 * 0.02562 * 22 21 20 36 36 H 1.08001 * 120.00293 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.20791 * 179.72260 * 24 23 22 38 38 H 1.08000 * 120.15970 * 180.24670 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2697 9 6 1.3462 -2.4101 -0.3551 10 6 0.2109 -2.3730 -1.1868 11 6 -0.4284 -3.5435 -1.5273 12 6 0.0429 -4.7594 -1.0603 13 6 1.1615 -4.8112 -0.2321 14 7 1.6254 -6.0436 0.2384 15 6 0.7509 -7.0293 0.5217 16 8 -0.4446 -6.8181 0.4574 17 6 1.2454 -8.3669 0.9104 18 6 2.6063 -8.6325 0.9914 19 6 3.0393 -9.9036 1.3613 20 7 2.1949 -10.8665 1.6376 21 6 0.8751 -10.6821 1.5806 22 6 -0.0197 -11.7298 1.8819 23 6 -1.3591 -11.4774 1.8046 24 6 -1.8094 -10.2128 1.4308 25 7 -0.9738 -9.2392 1.1559 26 6 0.3449 -9.4214 1.2131 27 6 1.8175 -3.6459 0.1212 28 1 -0.4850 0.8400 0.0004 29 1 -0.1577 -1.4278 -1.5571 30 1 -1.2990 -3.5140 -2.1658 31 1 -0.4626 -5.6728 -1.3368 32 1 2.5765 -6.1891 0.3609 33 1 3.3249 -7.8576 0.7685 34 1 4.0994 -10.1006 1.4219 35 1 0.3448 -12.7059 2.1661 36 1 -2.0698 -12.2592 2.0288 37 1 -2.8718 -10.0285 1.3694 38 1 2.6873 -3.6852 0.7601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154305515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:14 Heat of formation + Delta-G solvation = 65.914710 kcal Electronic energy + Delta-G solvation = -24556.934537 eV Core-core repulsion = 20943.497096 eV Total energy + Delta-G solvation = -3613.437441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49421 -39.54535 -38.02749 -37.15598 -34.47458 -34.06067 -33.09020 -31.41775 -31.00790 -29.83753 -28.24554 -25.62302 -25.22928 -24.33369 -23.64826 -21.43676 -20.91625 -20.01963 -18.99059 -18.07621 -17.86881 -17.22866 -16.14467 -15.57966 -15.36674 -15.19110 -14.89109 -14.82964 -14.58711 -14.20649 -14.13046 -13.51429 -13.32549 -13.02631 -12.83729 -12.78358 -12.24453 -12.10434 -11.67920 -11.26280 -11.18051 -10.96267 -10.90178 -10.81383 -10.49614 -10.23826 -9.67715 -9.59078 -9.25769 -9.24555 -9.08199 -9.01208 -8.85293 -7.47103 -6.93932 -6.72325 -4.36563 -0.23252 0.35818 1.45856 2.54573 2.76976 2.82646 3.07786 3.10760 3.21149 3.31805 3.48211 3.79049 3.93849 3.96765 4.05291 4.26793 4.43703 4.48975 4.59307 4.65922 4.87622 4.97596 5.27334 5.28696 5.47024 5.59023 5.68127 5.77095 5.90270 6.29047 6.35115 6.53313 6.71627 6.92151 6.99936 7.03997 7.25071 7.44147 7.57809 7.64126 7.72688 7.97555 8.02722 8.13108 8.28772 8.55482 8.67888 8.89045 8.96379 10.21089 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.002700 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.745675 B =10369.773017 C =11057.408166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.095 4.095 12 C -0.224 4.224 13 C 0.153 3.847 14 N -0.661 5.661 15 C 0.540 3.460 16 O -0.470 6.470 17 C -0.045 4.045 18 C -0.132 4.132 19 C 0.131 3.869 20 N -0.456 5.456 21 C 0.074 3.926 22 C -0.048 4.048 23 C -0.158 4.158 24 C 0.132 3.868 25 N -0.427 5.427 26 C 0.111 3.889 27 C -0.243 4.243 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.397 0.603 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -18.977 2.766 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.185 4.185 11 C -0.114 4.114 12 C -0.245 4.245 13 C 0.062 3.938 14 N -0.307 5.307 15 C 0.325 3.675 16 O -0.341 6.341 17 C -0.057 4.057 18 C -0.154 4.154 19 C -0.042 4.042 20 N -0.165 5.165 21 C -0.050 4.050 22 C -0.074 4.074 23 C -0.180 4.180 24 C -0.041 4.041 25 N -0.134 5.134 26 C -0.014 4.014 27 C -0.264 4.264 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.119 0.881 32 H 0.232 0.768 33 H 0.168 0.832 34 H 0.188 0.812 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.183 0.817 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.018 -18.665 2.730 18.972 hybrid contribution 0.873 0.661 0.211 1.115 sum 2.891 -18.004 2.942 18.471 Atomic orbital electron populations 1.69835 1.07536 1.29171 1.35362 1.25893 0.94725 1.01255 0.92307 0.86307 0.80411 0.80668 0.79267 1.19295 1.20366 1.18693 1.19511 0.97691 0.90985 1.41275 0.90459 1.17369 0.91050 0.91311 0.88366 1.21391 0.99125 0.96890 1.01138 1.20581 0.98413 0.92751 0.99615 1.20307 1.00893 0.97358 1.05972 1.17378 0.97249 0.82537 0.96635 1.43349 1.09443 1.12680 1.65197 1.17859 0.86849 0.83320 0.79487 1.90886 1.14518 1.80908 1.47791 1.20588 0.92816 0.94305 0.98026 1.22615 0.95048 0.99270 0.98454 1.23002 1.00109 0.87986 0.93060 1.67719 1.02146 1.33831 1.12786 1.19622 0.91329 0.93524 1.00502 1.21281 0.92122 0.98374 0.95637 1.22078 0.96250 0.99108 1.00584 1.23334 1.00543 0.88172 0.92043 1.68280 1.01584 1.32240 1.11255 1.19414 0.91516 0.92176 0.98299 1.20694 1.05617 0.91355 1.08753 0.90872 0.86271 0.88985 0.88139 0.76799 0.83193 0.81155 0.83455 0.83714 0.81681 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 10.94 55.55 0.61 -20.09 16 2 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 3 Si 0.91 18.58 29.59 -169.99 -5.03 13.55 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 10 C -0.17 -4.37 8.69 -38.84 -0.34 -4.71 16 11 C -0.09 -2.33 10.01 -39.69 -0.40 -2.72 16 12 C -0.22 -5.42 8.66 -39.09 -0.34 -5.76 16 13 C 0.15 3.49 6.24 -83.79 -0.52 2.97 16 14 N -0.66 -11.99 5.28 -10.77 -0.06 -12.05 16 15 C 0.54 10.18 7.52 -12.34 -0.09 10.08 16 16 O -0.47 -10.74 13.05 5.31 0.07 -10.67 16 17 C -0.05 -0.68 5.94 -104.32 -0.62 -1.30 16 18 C -0.13 -1.39 9.60 -38.95 -0.37 -1.77 16 19 C 0.13 1.23 11.15 -17.51 -0.20 1.04 16 20 N -0.46 -5.32 10.30 -10.97 -0.11 -5.43 16 21 C 0.07 0.94 6.61 -84.84 -0.56 0.38 16 22 C -0.05 -0.46 10.11 -39.15 -0.40 -0.86 16 23 C -0.16 -1.33 10.02 -39.79 -0.40 -1.73 16 24 C 0.13 1.49 11.16 -17.40 -0.19 1.30 16 25 N -0.43 -6.83 8.55 -10.71 -0.09 -6.92 16 26 C 0.11 1.69 6.62 -84.55 -0.56 1.13 16 27 C -0.24 -5.84 9.70 -38.67 -0.38 -6.22 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.12 3.22 6.17 -52.49 -0.32 2.89 16 30 H 0.09 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.10 2.43 6.47 -52.49 -0.34 2.09 16 32 H 0.40 5.49 6.96 -40.82 -0.28 5.21 16 33 H 0.15 1.12 6.52 -52.48 -0.34 0.78 16 34 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -34.16 331.50 -9.38 -43.55 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.38 Total: 9.33 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -6.39 Total: -16.26 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.35 Total: -44.49 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.16 -9.38 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154305515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.462 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds