Wall clock time and date at job start Tue Mar 31 2020 13:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86804 * 119.99673 * 2 1 4 4 H 1.48491 * 109.47274 * 270.00041 * 3 2 1 5 5 H 1.48499 * 109.47020 * 30.00454 * 3 2 1 6 6 H 1.48505 * 109.46665 * 150.00086 * 3 2 1 7 7 C 1.39926 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00273 * 196.79612 * 7 2 1 9 9 C 1.41410 * 119.99684 * 16.80176 * 7 2 1 10 10 C 1.40783 * 120.21190 * 25.16548 * 9 7 2 11 11 C 1.37650 * 119.88979 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32685 * 359.72284 * 11 10 9 13 13 C 1.39278 * 120.42581 * 0.55250 * 12 11 10 14 14 N 1.39837 * 119.94893 * 179.72088 * 13 12 11 15 15 C 1.34776 * 120.00352 * 325.52256 * 14 13 12 16 16 O 1.21567 * 119.99565 * 354.89301 * 15 14 13 17 17 C 1.47819 * 120.00102 * 174.89133 * 15 14 13 18 18 C 1.38891 * 121.07508 * 0.02562 * 17 15 14 19 19 C 1.39281 * 119.64346 * 179.97438 * 18 17 15 20 20 N 1.31021 * 121.75790 * 0.02562 * 19 18 17 21 21 C 1.33381 * 121.81197 * 359.95488 * 20 19 18 22 22 C 1.41034 * 121.06581 * 180.02562 * 21 20 19 23 23 C 1.36511 * 118.23564 * 180.02562 * 22 21 20 24 24 C 1.39347 * 120.00110 * 0.25778 * 23 22 21 25 25 N 1.31212 * 121.58919 * 359.48521 * 24 23 22 26 26 C 1.33247 * 121.31618 * 0.49972 * 25 24 23 27 27 C 1.38310 * 120.09774 * 359.45264 * 13 12 11 28 28 H 0.96999 * 120.00032 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05462 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.83308 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.78727 * 180.29811 * 12 11 10 32 32 H 0.96998 * 119.99713 * 145.52880 * 14 13 12 33 33 H 1.08007 * 120.17681 * 359.96034 * 18 17 15 34 34 H 1.07994 * 119.11777 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.88903 * 0.02562 * 22 21 20 36 36 H 1.08001 * 120.00293 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.20791 * 179.72260 * 24 23 22 38 38 H 1.08000 * 120.15970 * 180.24670 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2318 0.2697 9 6 1.3462 -2.4101 -0.3551 10 6 0.2109 -2.3730 -1.1868 11 6 -0.4284 -3.5435 -1.5273 12 6 0.0429 -4.7594 -1.0603 13 6 1.1615 -4.8112 -0.2321 14 7 1.6254 -6.0436 0.2384 15 6 0.7509 -7.0293 0.5217 16 8 -0.4446 -6.8181 0.4574 17 6 1.2454 -8.3669 0.9104 18 6 2.6063 -8.6325 0.9914 19 6 3.0393 -9.9036 1.3613 20 7 2.1949 -10.8665 1.6376 21 6 0.8751 -10.6821 1.5806 22 6 -0.0197 -11.7298 1.8819 23 6 -1.3591 -11.4774 1.8046 24 6 -1.8094 -10.2128 1.4308 25 7 -0.9738 -9.2392 1.1559 26 6 0.3449 -9.4214 1.2131 27 6 1.8175 -3.6459 0.1212 28 1 -0.4850 0.8400 0.0004 29 1 -0.1577 -1.4278 -1.5571 30 1 -1.2990 -3.5140 -2.1658 31 1 -0.4626 -5.6728 -1.3368 32 1 2.5765 -6.1891 0.3609 33 1 3.3249 -7.8576 0.7685 34 1 4.0994 -10.1006 1.4219 35 1 0.3448 -12.7059 2.1661 36 1 -2.0698 -12.2592 2.0288 37 1 -2.8718 -10.0285 1.3694 38 1 2.6873 -3.6852 0.7601 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154305515.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:13 Heat of formation + Delta-G solvation = 43.584303 kcal Electronic energy + Delta-G solvation = -24557.902856 eV Core-core repulsion = 20943.497096 eV Total energy + Delta-G solvation = -3614.405760 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.42888 -41.02419 -39.04376 -38.79954 -36.19798 -35.17922 -34.70367 -32.39045 -31.84710 -31.78284 -29.97021 -27.21588 -26.57655 -25.17485 -24.77702 -23.04930 -22.67690 -21.45959 -19.96050 -19.54992 -19.06543 -18.41750 -17.39305 -17.23217 -16.73552 -16.69210 -16.25543 -15.87465 -15.72468 -15.57732 -15.17745 -14.88224 -14.68807 -14.42662 -14.09833 -14.04740 -13.66126 -13.55124 -13.01382 -12.93861 -12.85825 -12.72927 -12.31012 -11.95779 -11.87592 -11.66241 -11.46841 -11.23050 -11.09069 -10.77052 -10.04280 -9.97290 -9.94878 -9.43727 -8.79624 -8.60644 -6.36371 -1.13534 -0.46036 0.51673 0.95515 0.97551 1.40597 1.53084 1.54479 1.74844 1.96098 2.08849 2.22723 2.75136 3.02407 3.03102 3.24926 3.35020 3.45537 3.66627 3.71514 3.88509 4.18045 4.21323 4.32078 4.44356 4.49742 4.63558 4.69001 4.86170 4.98331 5.00076 5.02390 5.09180 5.16330 5.22325 5.32742 5.59381 5.70834 5.81225 6.06648 6.09426 6.27033 6.54846 6.61229 6.67185 6.88049 6.91969 6.96993 7.20107 8.34787 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.026923 B = 0.002700 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.745675 B =10369.773017 C =11057.408166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.494 4.494 8 H 0.084 0.916 9 C 0.095 3.905 10 C -0.193 4.193 11 C -0.097 4.097 12 C -0.239 4.239 13 C 0.165 3.835 14 N -0.651 5.651 15 C 0.542 3.458 16 O -0.520 6.520 17 C -0.087 4.087 18 C -0.103 4.103 19 C 0.135 3.865 20 N -0.458 5.458 21 C 0.057 3.943 22 C -0.048 4.048 23 C -0.144 4.144 24 C 0.126 3.874 25 N -0.490 5.490 26 C 0.084 3.916 27 C -0.250 4.250 28 H 0.288 0.712 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.419 0.581 33 H 0.182 0.818 34 H 0.220 0.780 35 H 0.178 0.822 36 H 0.191 0.809 37 H 0.184 0.816 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 -20.900 3.781 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.102 0.898 9 C 0.092 3.908 10 C -0.213 4.213 11 C -0.116 4.116 12 C -0.260 4.260 13 C 0.072 3.928 14 N -0.299 5.299 15 C 0.329 3.671 16 O -0.395 6.395 17 C -0.099 4.099 18 C -0.125 4.125 19 C -0.038 4.038 20 N -0.167 5.167 21 C -0.066 4.066 22 C -0.074 4.074 23 C -0.165 4.165 24 C -0.046 4.046 25 N -0.199 5.199 26 C -0.040 4.040 27 C -0.272 4.272 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.258 0.742 33 H 0.200 0.800 34 H 0.236 0.764 35 H 0.195 0.805 36 H 0.208 0.792 37 H 0.201 0.799 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.207 -20.637 3.755 21.394 hybrid contribution 0.168 1.070 -0.062 1.085 sum 4.375 -19.567 3.693 20.388 Atomic orbital electron populations 1.69908 1.09228 1.30604 1.35625 1.26839 0.95463 1.04792 0.91142 0.85135 0.79049 0.75580 0.79513 1.18644 1.19635 1.17783 1.19826 0.98181 0.91855 1.42435 0.89808 1.17761 0.91501 0.92707 0.88786 1.21326 1.00392 0.96742 1.02841 1.20778 0.98712 0.92584 0.99558 1.20400 1.01785 0.96915 1.06883 1.17388 0.96161 0.84135 0.95146 1.43203 1.10741 1.11124 1.64809 1.18481 0.86206 0.84497 0.77913 1.90844 1.16706 1.81982 1.49948 1.20352 0.94923 0.92346 1.02282 1.23039 0.93525 1.00695 0.95240 1.23784 1.01919 0.86771 0.91303 1.67822 1.01823 1.34477 1.12590 1.19940 0.92283 0.93393 1.01030 1.21722 0.92212 0.98785 0.94689 1.22453 0.96773 0.98707 0.98549 1.23869 1.01109 0.88831 0.90830 1.68221 1.02718 1.34820 1.14101 1.19657 0.91587 0.93341 0.99423 1.20873 1.06360 0.90979 1.08973 0.90155 0.87710 0.87491 0.88572 0.74236 0.80034 0.76376 0.80484 0.79230 0.79885 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.25 10.94 21.82 0.24 -44.02 16 2 C 0.03 1.64 5.16 85.25 0.44 2.08 16 3 Si 0.99 37.97 29.59 68.60 2.03 40.00 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 7 C -0.49 -26.35 9.05 23.46 0.21 -26.13 16 8 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 9 C 0.10 5.22 5.57 -21.31 -0.12 5.10 16 10 C -0.19 -10.65 8.69 22.75 0.20 -10.45 16 11 C -0.10 -5.00 10.01 22.20 0.22 -4.78 16 12 C -0.24 -11.98 8.66 22.59 0.20 -11.78 16 13 C 0.16 7.64 6.24 38.13 0.24 7.88 16 14 N -0.65 -23.59 5.28 -306.26 -1.62 -25.21 16 15 C 0.54 20.92 7.52 86.78 0.65 21.58 16 16 O -0.52 -25.06 13.05 -3.93 -0.05 -25.11 16 17 C -0.09 -2.61 5.94 -19.67 -0.12 -2.73 16 18 C -0.10 -1.93 9.60 22.68 0.22 -1.71 16 19 C 0.13 2.06 11.15 85.06 0.95 3.00 16 20 N -0.46 -9.42 10.30 -188.62 -1.94 -11.36 16 21 C 0.06 1.36 6.61 40.43 0.27 1.63 16 22 C -0.05 -0.81 10.11 22.55 0.23 -0.58 16 23 C -0.14 -2.07 10.02 22.13 0.22 -1.85 16 24 C 0.13 2.80 11.16 85.05 0.95 3.75 16 25 N -0.49 -16.27 8.55 -187.79 -1.61 -17.88 16 26 C 0.08 2.60 6.62 40.68 0.27 2.87 16 27 C -0.25 -12.21 9.70 22.86 0.22 -11.99 16 28 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 29 H 0.10 5.97 6.17 -2.91 -0.02 5.95 16 30 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 31 H 0.10 4.88 6.47 -2.91 -0.02 4.86 16 32 H 0.42 10.97 6.96 -92.71 -0.65 10.33 16 33 H 0.18 2.04 6.52 -2.91 -0.02 2.03 16 34 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.18 3.02 8.06 -2.91 -0.02 3.00 16 38 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -80.30 331.50 2.78 -77.52 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.49 Total: 30.20 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.25 Total: -24.14 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.93 Total: -98.46 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -80.30 2.78 -77.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154305515.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.105 kcal (2) G-P(sol) polarization free energy of solvation -80.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds