Wall clock time and date at job start Tue Mar 31 2020 12:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47313 * 2 1 4 4 C 1.34233 * 116.99763 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00012 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99812 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46778 * 60.00122 * 6 4 3 8 8 C 1.47201 * 109.47229 * 300.00853 * 6 4 3 9 9 N 4.97821 * 108.58967 * 333.17577 * 2 1 3 10 10 N 1.46498 * 109.47055 * 180.02562 * 6 4 3 11 11 C 1.39669 * 119.99824 * 205.00347 * 10 6 4 12 12 C 1.38177 * 119.99098 * 353.66901 * 11 10 6 13 13 C 1.41129 * 119.50418 * 180.02562 * 12 11 10 14 14 C 1.40364 * 120.25131 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99726 * 330.09043 * 14 13 12 16 16 C 1.46525 * 120.00162 * 150.08844 * 14 13 12 17 17 N 1.29503 * 119.99959 * 168.36583 * 16 14 13 18 18 Si 1.86800 * 119.99916 * 348.36823 * 16 14 13 19 19 H 1.48503 * 109.47292 * 92.70459 * 18 16 14 20 20 H 1.48496 * 109.47109 * 212.70704 * 18 16 14 21 21 H 1.48503 * 109.47021 * 332.70611 * 18 16 14 22 22 C 1.41337 * 119.49875 * 0.02562 * 13 12 11 23 23 C 1.36488 * 119.95791 * 359.97438 * 22 13 12 24 24 C 1.38663 * 120.50344 * 359.73001 * 23 22 13 25 25 N 1.48018 * 119.74482 * 180.29794 * 24 23 22 26 26 O 1.31700 * 119.99943 * 5.97441 * 25 24 23 27 27 O 1.31700 * 120.00528 * 185.97781 * 25 24 23 28 28 H 1.09010 * 109.46916 * 299.99576 * 1 2 3 29 29 H 1.08998 * 109.47596 * 59.98728 * 1 2 3 30 30 H 1.08998 * 109.47460 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46916 * 240.00424 * 2 1 3 32 32 H 1.08997 * 109.47924 * 120.00850 * 2 1 3 33 33 H 0.96993 * 119.99925 * 25.00586 * 10 6 4 34 34 H 1.07997 * 120.24580 * 359.97438 * 12 11 10 35 35 H 0.97006 * 119.99936 * 179.97438 * 17 16 14 36 36 H 1.07991 * 120.02151 * 180.02562 * 22 13 12 37 37 H 1.08002 * 119.74551 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.5846 3.4692 0.8912 8 6 3.4675 3.6564 -1.2006 9 7 3.1169 4.2107 -2.1292 10 7 5.3838 2.8606 0.0010 11 6 6.1386 3.9185 0.5128 12 6 5.5143 5.0895 0.8979 13 6 6.2871 6.1521 1.4131 14 6 5.6692 7.3488 1.8087 15 1 4.7630 7.6756 1.3205 16 6 6.2537 8.1545 2.8839 17 7 5.8236 9.3570 3.0990 18 14 7.6193 7.4473 3.9443 19 1 8.9365 7.8169 3.3667 20 1 7.5111 7.9946 5.3205 21 1 7.4958 5.9681 3.9888 22 6 7.6879 6.0026 1.5268 23 6 8.2825 4.8366 1.1400 24 6 7.5218 3.7908 0.6396 25 7 8.1834 2.5313 0.2312 26 8 9.4707 2.3619 0.4520 27 8 7.4849 1.5799 -0.3531 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8898 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8898 33 1 5.8282 2.0751 -0.3544 34 1 4.4432 5.1910 0.8046 35 1 6.2102 9.8903 3.8111 36 1 8.2873 6.8102 1.9203 37 1 9.3533 4.7262 1.2279 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170371055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:42 Heat of formation + Delta-G solvation = -24.115864 kcal Electronic energy + Delta-G solvation = -26135.145597 eV Core-core repulsion = 22074.662124 eV Total energy + Delta-G solvation = -4060.483473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.05950 -40.81133 -38.78450 -38.45830 -37.82622 -36.67317 -35.77044 -34.74527 -33.16043 -32.75321 -31.53202 -28.94814 -28.79102 -25.36898 -24.56783 -23.24440 -23.12515 -22.45733 -20.49900 -19.79386 -19.35288 -18.83368 -18.47807 -18.18316 -17.59093 -17.43845 -16.94872 -16.54149 -16.28656 -15.53412 -15.24673 -15.08506 -15.00070 -14.72958 -14.57441 -14.49249 -14.09669 -14.03537 -13.64685 -13.53180 -13.25986 -13.09734 -12.99845 -12.81088 -12.53937 -12.34550 -11.88560 -11.84871 -11.75550 -11.59949 -11.55211 -11.46736 -11.43793 -11.15035 -10.17965 -9.45794 -8.97130 -7.01035 -1.22142 0.57163 0.61635 0.73286 0.90605 0.96711 1.20734 1.27174 1.41666 1.49845 1.63042 2.00951 2.16268 2.47236 2.54337 3.05947 3.36308 3.66422 3.83798 4.01426 4.04592 4.11520 4.22314 4.34803 4.37347 4.55435 4.67248 4.76792 4.92161 4.94120 5.04869 5.14187 5.32718 5.36865 5.44744 5.57094 5.61118 5.89826 6.11105 6.14735 6.30992 6.32518 6.38016 6.64157 7.47696 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.004327 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.181801 B = 6469.089689 C = 7909.592333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.344 6.344 4 C 0.478 3.522 5 O -0.500 6.500 6 C 0.262 3.738 7 H 0.197 0.803 8 C 0.211 3.789 9 N -0.417 5.417 10 N -0.719 5.719 11 C 0.282 3.718 12 C -0.280 4.280 13 C 0.082 3.918 14 C -0.309 4.309 15 H 0.109 0.891 16 C 0.047 3.953 17 N -0.723 5.723 18 Si 0.955 3.045 19 H -0.243 1.243 20 H -0.261 1.261 21 H -0.243 1.243 22 C -0.204 4.204 23 C -0.026 4.026 24 C -0.142 4.142 25 N 0.053 4.947 26 O -0.361 6.361 27 O -0.366 6.366 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.421 0.579 34 H 0.146 0.854 35 H 0.327 0.673 36 H 0.135 0.865 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 -2.230 4.467 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.260 6.260 4 C 0.317 3.683 5 O -0.386 6.386 6 C 0.151 3.849 7 H 0.213 0.787 8 C -0.110 4.110 9 N -0.094 5.094 10 N -0.370 5.370 11 C 0.176 3.824 12 C -0.307 4.307 13 C 0.077 3.923 14 C -0.334 4.334 15 H 0.127 0.873 16 C -0.188 4.188 17 N -0.341 5.341 18 Si 0.775 3.225 19 H -0.167 1.167 20 H -0.186 1.186 21 H -0.166 1.166 22 C -0.226 4.226 23 C -0.045 4.045 24 C -0.253 4.253 25 N 0.454 4.546 26 O -0.505 6.505 27 O -0.499 6.499 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.276 0.724 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.152 0.848 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.329 -1.541 3.138 11.857 hybrid contribution 1.247 -1.075 0.202 1.659 sum -10.082 -2.616 3.340 10.938 Atomic orbital electron populations 1.21849 0.89891 1.04637 1.03947 1.23515 0.97352 0.78075 1.03361 1.86499 1.21466 1.34934 1.83103 1.22677 0.82054 0.90470 0.73077 1.90787 1.61024 1.42343 1.44435 1.17559 0.82925 0.90068 0.94387 0.78703 1.29193 0.93313 0.94044 0.94476 1.81201 1.08278 1.09180 1.10767 1.45877 1.02080 1.22181 1.66880 1.17221 0.86581 0.88651 0.89946 1.20541 0.99714 0.91345 1.19091 1.17684 0.91343 0.92203 0.91066 1.21759 1.06406 0.97562 1.07676 0.87328 1.28552 0.98529 0.93591 0.98096 1.68880 1.33060 1.07830 1.24364 0.85607 0.77784 0.81849 0.77212 1.16749 1.18611 1.16572 1.21064 0.94953 0.97486 1.09069 1.20074 0.99935 0.90341 0.94193 1.19905 0.91167 0.86333 1.27895 1.50021 1.01917 1.03338 0.99336 1.96079 0.94210 1.90226 1.69946 1.95688 1.62154 1.38464 1.53569 0.90650 0.91528 0.87812 0.91109 0.90124 0.72433 0.83623 0.85893 0.84781 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 71.98 0.74 -0.87 16 2 C 0.05 0.87 6.19 71.98 0.45 1.31 16 3 O -0.34 -7.66 10.13 -51.45 -0.52 -8.18 16 4 C 0.48 13.18 7.29 71.24 0.52 13.70 16 5 O -0.50 -17.09 15.59 21.97 0.34 -16.75 16 6 C 0.26 7.27 2.64 42.44 0.11 7.38 16 7 H 0.20 3.91 6.78 -2.39 -0.02 3.90 16 8 C 0.21 6.33 14.30 89.43 1.28 7.61 16 9 N -0.42 -13.99 18.54 20.02 0.37 -13.62 16 10 N -0.72 -26.40 4.97 -331.35 -1.65 -28.05 16 11 C 0.28 11.07 6.60 38.18 0.25 11.32 16 12 C -0.28 -9.85 8.79 22.97 0.20 -9.65 16 13 C 0.08 3.01 5.24 -21.29 -0.11 2.90 16 14 C -0.31 -11.09 9.87 24.95 0.25 -10.84 16 15 H 0.11 3.98 8.06 -2.91 -0.02 3.95 16 16 C 0.05 1.56 5.65 87.20 0.49 2.05 16 17 N -0.72 -24.53 13.89 23.21 0.32 -24.21 16 18 Si 0.95 27.64 24.51 68.60 1.68 29.32 16 19 H -0.24 -6.69 6.76 99.48 0.67 -6.02 16 20 H -0.26 -6.96 7.11 99.48 0.71 -6.26 16 21 H -0.24 -7.70 6.62 99.48 0.66 -7.04 16 22 C -0.20 -7.48 7.04 22.62 0.16 -7.32 16 23 C -0.03 -1.03 9.49 21.96 0.21 -0.82 16 24 C -0.14 -6.31 6.92 36.78 0.25 -6.06 16 25 N 0.05 2.71 4.98 -45.50 -0.23 2.48 16 26 O -0.36 -19.37 19.14 3.51 0.07 -19.30 16 27 O -0.37 -19.13 16.29 3.51 0.06 -19.08 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.33 8.13 -2.39 -0.02 1.32 16 33 H 0.42 17.73 3.99 -113.07 -0.45 17.27 16 34 H 0.15 4.30 6.12 -2.91 -0.02 4.28 16 35 H 0.33 9.39 8.27 -92.70 -0.77 8.62 16 36 H 0.13 4.40 4.31 -2.92 -0.01 4.39 16 37 H 0.14 5.19 7.56 -2.91 -0.02 5.17 16 Total: -1.00 -59.51 334.62 5.88 -53.63 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.63 Total: 33.03 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 4.80 Total: 10.72 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -1.18 Total: -63.39 kcal Atomic # 8 Polarization: -63.25 SS G_CDS: -0.05 Total: -63.30 kcal Atomic # 14 Polarization: 27.64 SS G_CDS: 1.68 Total: 29.32 kcal Total: -59.51 5.88 -53.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170371055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.518 kcal (2) G-P(sol) polarization free energy of solvation -59.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds