Wall clock time and date at job start Tue Mar 31 2020 12:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47331 * 2 1 4 4 C 1.52992 * 109.47312 * 120.00266 * 2 1 3 5 5 C 1.50697 * 109.47378 * 294.99972 * 4 2 1 6 6 O 1.21292 * 120.00173 * 359.97438 * 5 4 2 7 7 N 1.34782 * 120.00352 * 179.97438 * 5 4 2 8 8 C 1.40008 * 120.00056 * 175.68179 * 7 5 4 9 9 C 1.39366 * 119.90827 * 215.19951 * 8 7 5 10 10 C 1.38369 * 120.46545 * 179.97438 * 9 8 7 11 11 C 1.38002 * 120.29133 * 0.04644 * 10 9 8 12 12 F 1.35097 * 120.09912 * 179.97438 * 11 10 9 13 13 C 1.41007 * 119.81272 * 359.97438 * 11 10 9 14 14 C 1.41294 * 120.23375 * 179.97438 * 13 11 10 15 15 H 1.08003 * 119.99745 * 324.96452 * 14 13 11 16 16 C 1.39923 * 120.00272 * 145.23925 * 14 13 11 17 17 N 1.30859 * 119.99657 * 4.44428 * 16 14 13 18 18 Si 1.86797 * 120.00022 * 184.44729 * 16 14 13 19 19 H 1.48498 * 109.47063 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47266 * 119.99831 * 18 16 14 21 21 H 1.48502 * 109.47157 * 239.99584 * 18 16 14 22 22 C 1.38146 * 119.90893 * 35.48591 * 8 7 5 23 23 C 1.53005 * 109.46964 * 240.00374 * 2 1 3 24 24 F 1.39898 * 109.47031 * 299.99978 * 23 2 1 25 25 F 1.39901 * 109.46642 * 60.00123 * 23 2 1 26 26 F 1.39903 * 109.46769 * 179.97438 * 23 2 1 27 27 H 1.08992 * 109.47220 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46485 * 299.99717 * 1 2 3 29 29 H 1.09000 * 109.47109 * 59.99497 * 1 2 3 30 30 H 1.09008 * 109.47207 * 174.99719 * 4 2 1 31 31 H 1.08998 * 109.47074 * 55.00168 * 4 2 1 32 32 H 0.97003 * 119.99887 * 355.68529 * 7 5 4 33 33 H 1.07992 * 119.76694 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.85057 * 180.02562 * 10 9 8 35 35 H 0.96995 * 119.99428 * 179.97438 * 17 16 14 36 36 H 1.07995 * 120.14479 * 0.02562 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 8 1.0117 1.0874 2.3633 7 7 1.9846 -0.3921 3.7001 8 6 1.6938 0.3754 4.8344 9 6 2.5753 0.3816 5.9139 10 6 2.2996 1.1363 7.0404 11 6 1.1464 1.8914 7.1073 12 9 0.8808 2.6264 8.2093 13 6 0.2459 1.8936 6.0222 14 6 -0.9377 2.6630 6.0815 15 1 -1.4583 2.7814 7.0203 16 6 -1.4385 3.2667 4.9228 17 7 -0.8607 3.0482 3.7692 18 14 -2.9316 4.3847 5.0227 19 1 -3.3952 4.4666 6.4311 20 1 -2.5673 5.7414 4.5413 21 1 -4.0197 3.8343 4.1751 22 6 0.5310 1.1198 4.8829 23 6 2.0400 -0.7212 -1.2493 24 9 1.5736 -2.0402 -1.2494 25 9 1.5736 -0.0615 -2.3915 26 9 3.4390 -0.7207 -1.2496 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.1264 -0.7995 1.2054 31 1 1.6054 -1.7198 1.2950 32 1 2.4331 -1.2470 3.7949 33 1 3.4802 -0.2061 5.8705 34 1 2.9898 1.1342 7.8711 35 1 -1.2081 3.4664 2.9659 36 1 -0.1540 1.1105 4.0481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180090063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:45 Heat of formation + Delta-G solvation = -224.581329 kcal Electronic energy + Delta-G solvation = -26931.720726 eV Core-core repulsion = 22300.767716 eV Total energy + Delta-G solvation = -4630.953010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.20547 -47.68481 -47.66841 -47.21592 -39.82735 -37.30584 -35.03066 -34.21544 -33.18051 -29.75787 -29.09738 -27.06907 -26.23520 -25.36082 -22.26190 -21.49770 -20.66435 -19.64017 -18.65426 -18.42959 -17.70629 -17.55838 -16.15850 -16.04037 -15.81909 -15.61916 -14.95668 -14.65384 -14.53821 -14.25385 -14.11447 -13.99618 -13.86310 -13.83687 -13.72716 -13.41107 -13.15053 -12.87393 -12.51547 -12.32737 -11.87666 -11.79099 -11.50654 -11.41020 -11.32843 -11.27543 -11.14568 -10.96251 -10.61839 -10.29814 -9.72272 -9.25736 -9.11282 -8.93032 -7.47374 -6.95083 -6.53853 -4.42654 2.43447 2.64349 2.75458 3.06593 3.11256 3.16570 3.23772 3.45242 3.80175 3.97849 3.99315 4.04824 4.60770 4.62316 4.80504 5.03196 5.25408 5.41791 5.44199 5.47698 5.79616 5.85179 5.91188 6.07403 6.33892 6.37769 6.72576 6.87083 6.94890 7.22629 7.39402 7.49543 7.68454 8.00131 8.07890 8.25602 8.48204 8.78826 8.82107 8.83811 10.26887 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.003986 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.592820 B = 7022.551375 C = 8592.964209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 H 0.124 0.876 4 C -0.142 4.142 5 C 0.497 3.503 6 O -0.475 6.475 7 N -0.669 5.669 8 C 0.129 3.871 9 C -0.234 4.234 10 C -0.116 4.116 11 C -0.031 4.031 12 F -0.163 7.163 13 C 0.090 3.910 14 C -0.456 4.456 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.770 5.770 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.130 4.130 23 C 0.452 3.548 24 F -0.184 7.184 25 F -0.183 7.183 26 F -0.186 7.186 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.397 0.603 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.280 0.720 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.536 -8.615 -9.379 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.135 4.135 3 H 0.142 0.858 4 C -0.182 4.182 5 C 0.281 3.719 6 O -0.347 6.347 7 N -0.314 5.314 8 C 0.036 3.964 9 C -0.255 4.255 10 C -0.135 4.135 11 C -0.051 4.051 12 F -0.142 7.142 13 C 0.086 3.914 14 C -0.486 4.486 15 H 0.098 0.902 16 C -0.151 4.151 17 N -0.394 5.394 18 Si 0.738 3.262 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.151 4.151 23 C 0.398 3.602 24 F -0.166 7.166 25 F -0.164 7.164 26 F -0.168 7.168 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.231 0.769 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 4.057 -7.778 -9.775 13.134 hybrid contribution -0.048 0.045 -0.041 0.077 sum 4.009 -7.733 -9.816 13.123 Atomic orbital electron populations 1.22029 0.90721 1.03187 1.05741 1.22160 1.00517 1.01698 0.89134 0.85813 1.21689 1.03478 1.00659 0.92364 1.20234 0.81038 0.86555 0.84030 1.90938 1.35690 1.22565 1.85481 1.43319 1.60380 1.22462 1.05233 1.17674 0.95433 0.97225 0.86018 1.19904 1.00694 1.09326 0.95608 1.20257 0.96397 0.98814 0.98081 1.18052 0.97695 1.01954 0.87449 1.91270 1.94440 1.76433 1.52096 1.17579 0.92601 0.91394 0.89852 1.19438 1.06951 1.26560 0.95636 0.90239 1.25931 0.97571 0.96759 0.94853 1.69857 1.35722 1.34901 0.98959 0.86172 0.80748 0.79813 0.79482 1.18544 1.19906 1.19942 1.21678 0.95929 0.96774 1.00736 1.20747 0.75250 0.77651 0.86508 1.93157 1.88456 1.38106 1.96853 1.93172 1.88476 1.80756 1.54021 1.93171 1.30311 1.96437 1.96837 0.92086 0.87483 0.91661 0.88091 0.87991 0.76909 0.88325 0.87846 0.90860 0.82379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.69 37.16 0.32 -1.65 16 2 C -0.12 -1.34 2.01 -90.62 -0.18 -1.53 16 3 H 0.12 1.54 7.95 -51.93 -0.41 1.12 16 4 C -0.14 -1.58 4.93 -27.89 -0.14 -1.72 16 5 C 0.50 8.01 7.38 -10.98 -0.08 7.93 16 6 O -0.47 -9.71 11.35 5.55 0.06 -9.65 16 7 N -0.67 -10.90 5.34 -9.89 -0.05 -10.95 16 8 C 0.13 2.74 6.29 -83.74 -0.53 2.21 16 9 C -0.23 -4.76 9.97 -39.11 -0.39 -5.15 16 10 C -0.12 -2.54 10.00 -39.62 -0.40 -2.94 16 11 C -0.03 -0.78 7.31 -38.62 -0.28 -1.06 16 12 F -0.16 -4.12 16.82 2.25 0.04 -4.08 16 13 C 0.09 2.39 5.55 -106.78 -0.59 1.80 16 14 C -0.46 -12.27 8.69 -37.79 -0.33 -12.60 16 15 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 16 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 17 N -0.77 -19.79 10.55 55.55 0.59 -19.20 16 18 Si 0.91 19.12 29.56 -169.99 -5.03 14.10 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 C -0.13 -3.24 7.30 -38.71 -0.28 -3.52 16 23 C 0.45 5.04 2.69 37.16 0.10 5.14 16 24 F -0.18 -2.05 16.37 2.25 0.04 -2.01 16 25 F -0.18 -2.18 16.80 2.25 0.04 -2.14 16 26 F -0.19 -2.11 16.71 2.25 0.04 -2.07 16 27 H 0.06 0.67 7.80 -51.93 -0.41 0.27 16 28 H 0.11 1.65 5.95 -51.93 -0.31 1.34 16 29 H 0.06 0.75 7.80 -51.93 -0.41 0.34 16 30 H 0.10 0.94 7.67 -51.92 -0.40 0.55 16 31 H 0.10 0.94 7.94 -51.93 -0.41 0.53 16 32 H 0.40 4.82 8.82 -40.82 -0.36 4.46 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 36 H 0.16 4.15 4.35 -52.49 -0.23 3.92 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -29.14 321.59 -5.63 -34.77 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.32 Total: 7.87 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.87 Total: -11.47 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.53 Total: -30.16 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.15 Total: -10.31 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.14 -5.63 -34.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180090063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.814 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds