Wall clock time and date at job start Tue Mar 31 2020 13:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46850 * 270.00010 * 3 2 1 5 5 H 1.48495 * 109.47315 * 29.99464 * 3 2 1 6 6 H 1.48495 * 109.46960 * 150.00164 * 3 2 1 7 7 C 1.40150 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.40737 * 119.99910 * 0.02562 * 7 2 1 10 10 N 1.33983 * 120.29112 * 12.70229 * 9 7 2 11 11 C 1.31607 * 119.90404 * 179.97438 * 10 9 7 12 12 C 1.39200 * 120.51750 * 359.97219 * 11 10 9 13 13 N 1.31993 * 120.60007 * 0.02948 * 12 11 10 14 14 C 1.32922 * 120.07543 * 359.97438 * 13 12 11 15 15 C 1.47649 * 120.25854 * 179.97438 * 14 13 12 16 16 C 1.40337 * 120.50537 * 223.08555 * 15 14 13 17 17 C 1.37947 * 118.35475 * 180.02562 * 16 15 14 18 18 C 1.39206 * 119.27413 * 359.97438 * 17 16 15 19 19 O 1.35542 * 119.51836 * 179.97438 * 18 17 16 20 20 C 1.35888 * 118.00145 * 185.51470 * 19 18 17 21 21 C 1.38758 * 120.06000 * 254.44837 * 20 19 18 22 22 C 1.38136 * 119.93947 * 179.72488 * 21 20 19 23 23 C 1.38273 * 120.05704 * 0.52498 * 22 21 20 24 24 C 1.38266 * 120.12084 * 359.77187 * 23 22 21 25 25 C 1.38143 * 120.05451 * 359.95616 * 24 23 22 26 26 N 1.32417 * 120.96485 * 359.97438 * 18 17 16 27 27 C 1.31671 * 121.80458 * 359.74453 * 26 18 17 28 28 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.74013 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.69856 * 179.97438 * 12 11 10 31 31 H 1.07999 * 120.82494 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.36572 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.02886 * 0.02562 * 21 20 19 34 34 H 1.07999 * 119.97149 * 180.27648 * 22 21 20 35 35 H 1.08001 * 119.93684 * 179.74535 * 23 22 21 36 36 H 1.07999 * 119.97362 * 179.97438 * 24 23 22 37 37 H 1.07999 * 120.02523 * 180.02562 * 25 24 23 38 38 H 1.07999 * 119.69568 * 180.26733 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5385 1.4402 0.7000 7 6 2.0077 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3041 -2.4325 0.0005 10 7 -0.0111 -2.4536 -0.2543 11 6 -0.6615 -3.5977 -0.2529 12 6 0.0063 -4.7901 0.0113 13 7 1.3016 -4.7928 0.2650 14 6 1.9819 -3.6508 0.2696 15 6 3.4308 -3.6491 0.5535 16 6 3.9896 -2.6797 1.4006 17 6 5.3485 -2.7192 1.6348 18 6 6.1151 -3.7109 1.0291 19 8 7.4508 -3.7540 1.2553 20 6 8.1864 -4.6614 0.5611 21 6 8.6621 -5.8009 1.1941 22 6 9.4049 -6.7245 0.4846 23 6 9.6837 -6.5089 -0.8524 24 6 9.2162 -5.3713 -1.4841 25 6 8.4682 -4.4472 -0.7806 26 7 5.5584 -4.6127 0.2351 27 6 4.2651 -4.6159 -0.0118 28 1 -0.4850 0.8400 -0.0004 29 1 -1.7217 -3.6115 -0.4583 30 1 -0.5406 -5.7214 0.0095 31 1 3.3713 -1.9211 1.8572 32 1 5.8125 -1.9894 2.2815 33 1 8.4476 -5.9679 2.2393 34 1 9.7715 -7.6138 0.9757 35 1 10.2681 -7.2303 -1.4042 36 1 9.4358 -5.2051 -2.5284 37 1 8.1029 -3.5590 -1.2746 38 1 3.8463 -5.3702 -0.6615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205329054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:58 Heat of formation + Delta-G solvation = 77.176991 kcal Electronic energy + Delta-G solvation = -24828.778899 eV Core-core repulsion = 21215.829828 eV Total energy + Delta-G solvation = -3612.949071 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.71356 -39.42253 -38.61262 -37.22212 -34.31078 -32.83386 -32.01492 -31.22965 -31.00317 -29.96134 -28.56234 -26.32834 -24.02452 -23.62154 -22.72610 -22.09126 -21.80573 -20.99580 -18.70522 -17.77051 -17.02987 -16.44408 -16.06799 -15.99118 -15.88736 -15.09697 -14.77397 -14.34862 -14.06034 -13.92455 -13.78988 -13.48250 -13.37593 -12.97374 -12.69484 -12.51051 -12.39182 -12.02424 -11.66234 -11.63184 -11.48718 -11.37733 -10.92060 -10.74931 -10.44723 -10.03154 -9.71600 -9.41057 -9.26967 -9.12753 -8.99850 -8.74657 -8.35701 -7.67754 -7.44631 -6.74035 -4.85897 1.13101 1.33518 1.49107 1.77835 2.42938 2.85359 2.92328 2.94940 3.06155 3.18067 3.69692 3.92678 4.29051 4.46832 4.73590 4.87045 4.87871 5.03970 5.23171 5.33608 5.43407 5.45694 5.49917 5.62639 5.65706 5.83430 5.92955 5.95310 6.05649 6.18577 6.30165 6.33296 6.42203 6.42550 6.46777 6.68760 6.73480 6.80396 6.84040 7.02723 7.13798 7.48382 7.74000 7.84557 8.18693 8.34326 8.46013 9.04515 9.63727 9.91513 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003609 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.574597 B = 7756.591400 C = 8973.798269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.407 4.407 8 H 0.098 0.902 9 C 0.225 3.775 10 N -0.452 5.452 11 C 0.089 3.911 12 C -0.112 4.112 13 N -0.411 5.411 14 C -0.028 4.028 15 C -0.046 4.046 16 C -0.031 4.031 17 C -0.183 4.183 18 C 0.284 3.716 19 O -0.258 6.258 20 C 0.110 3.890 21 C -0.121 4.121 22 C -0.109 4.109 23 C -0.126 4.126 24 C -0.107 4.107 25 C -0.119 4.119 26 N -0.529 5.529 27 C 0.140 3.860 28 H 0.281 0.719 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.153 0.847 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 -4.427 0.416 13.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.325 5.325 2 C -0.161 4.161 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.437 4.437 8 H 0.116 0.884 9 C 0.100 3.900 10 N -0.168 5.168 11 C -0.082 4.082 12 C -0.274 4.274 13 N -0.124 5.124 14 C -0.175 4.175 15 C -0.050 4.050 16 C -0.057 4.057 17 C -0.203 4.203 18 C 0.107 3.893 19 O -0.165 6.165 20 C 0.068 3.932 21 C -0.139 4.139 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.137 4.137 26 N -0.250 5.250 27 C -0.017 4.017 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.171 0.829 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.683 -4.709 0.211 13.531 hybrid contribution -0.492 1.161 0.180 1.274 sum 12.191 -3.548 0.391 12.703 Atomic orbital electron populations 1.70004 1.07529 1.29036 1.25933 1.26193 0.94996 1.01602 0.93317 0.86263 0.80684 0.80030 0.79860 1.18930 1.19689 1.17832 1.19805 0.95085 0.89079 1.39776 0.88417 1.19201 0.88978 0.92229 0.89559 1.69514 1.07581 1.24565 1.15161 1.23563 0.99911 0.90297 0.94433 1.22587 0.91532 0.98144 1.15094 1.67694 1.08236 1.29044 1.07408 1.19869 0.92256 0.90767 1.14568 1.19207 0.92850 0.95747 0.97186 1.21746 0.93085 0.97184 0.93732 1.20876 0.93667 1.00235 1.05557 1.19864 0.82685 0.92408 0.94329 1.84501 1.15603 1.54444 1.61929 1.18533 0.94174 0.89641 0.90887 1.21173 0.99795 0.92091 1.00879 1.20966 0.98587 0.98729 0.94437 1.21152 1.00551 0.97756 0.94955 1.20988 0.97734 0.94065 0.99770 1.21354 0.98927 1.00094 0.93344 1.67188 1.14818 1.25101 1.17879 1.22521 0.86063 0.96649 0.96432 0.90729 0.85036 0.85219 0.82896 0.84546 0.85541 0.85619 0.85923 0.85703 0.85766 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.13 11.58 55.56 0.64 -16.49 16 2 C 0.07 1.54 5.49 -17.32 -0.10 1.44 16 3 Si 0.91 16.90 29.56 -169.99 -5.03 11.87 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.25 -4.60 7.11 56.52 0.40 -4.20 16 7 C -0.41 -9.79 7.37 -37.92 -0.28 -10.07 16 8 H 0.10 2.21 5.45 -52.49 -0.29 1.92 16 9 C 0.23 5.71 6.50 -84.55 -0.55 5.16 16 10 N -0.45 -11.63 8.16 -10.72 -0.09 -11.71 16 11 C 0.09 2.01 11.22 -17.29 -0.19 1.82 16 12 C -0.11 -2.44 11.22 -17.13 -0.19 -2.63 16 13 N -0.41 -9.67 10.30 -8.99 -0.09 -9.76 16 14 C -0.03 -0.67 6.45 -82.12 -0.53 -1.20 16 15 C -0.05 -0.98 5.31 -104.74 -0.56 -1.53 16 16 C -0.03 -0.60 7.67 -38.90 -0.30 -0.90 16 17 C -0.18 -3.15 10.02 -39.33 -0.39 -3.54 16 18 C 0.28 5.13 7.37 -16.94 -0.12 5.00 16 19 O -0.26 -4.32 9.96 -2.47 -0.02 -4.34 16 20 C 0.11 1.67 5.11 -39.20 -0.20 1.47 16 21 C -0.12 -1.59 9.99 -39.43 -0.39 -1.99 16 22 C -0.11 -1.19 10.04 -39.61 -0.40 -1.59 16 23 C -0.13 -1.32 10.04 -39.56 -0.40 -1.71 16 24 C -0.11 -1.24 10.04 -39.61 -0.40 -1.63 16 25 C -0.12 -1.65 9.66 -39.42 -0.38 -2.04 16 26 N -0.53 -10.07 9.13 -12.91 -0.12 -10.19 16 27 C 0.14 2.79 10.83 -17.09 -0.19 2.60 16 28 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 29 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 30 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 31 H 0.15 2.91 6.73 -52.49 -0.35 2.55 16 32 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.16 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -28.68 337.34 -8.77 -37.44 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -3.58 Total: 9.43 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -5.57 Total: -11.33 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.35 Total: -48.15 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.02 Total: -4.34 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.68 -8.77 -37.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205329054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.622 kcal (2) G-P(sol) polarization free energy of solvation -28.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds