Wall clock time and date at job start Tue Mar 31 2020 13:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30697 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.46850 * 270.00010 * 3 2 1 5 5 H 1.48495 * 109.47315 * 29.99464 * 3 2 1 6 6 H 1.48495 * 109.46960 * 150.00164 * 3 2 1 7 7 C 1.40150 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.40737 * 119.99910 * 0.02562 * 7 2 1 10 10 N 1.33983 * 120.29112 * 12.70229 * 9 7 2 11 11 C 1.31607 * 119.90404 * 179.97438 * 10 9 7 12 12 C 1.39200 * 120.51750 * 359.97219 * 11 10 9 13 13 N 1.31993 * 120.60007 * 0.02948 * 12 11 10 14 14 C 1.32922 * 120.07543 * 359.97438 * 13 12 11 15 15 C 1.47649 * 120.25854 * 179.97438 * 14 13 12 16 16 C 1.40337 * 120.50537 * 223.08555 * 15 14 13 17 17 C 1.37947 * 118.35475 * 180.02562 * 16 15 14 18 18 C 1.39206 * 119.27413 * 359.97438 * 17 16 15 19 19 O 1.35542 * 119.51836 * 179.97438 * 18 17 16 20 20 C 1.35888 * 118.00145 * 185.51470 * 19 18 17 21 21 C 1.38758 * 120.06000 * 254.44837 * 20 19 18 22 22 C 1.38136 * 119.93947 * 179.72488 * 21 20 19 23 23 C 1.38273 * 120.05704 * 0.52498 * 22 21 20 24 24 C 1.38266 * 120.12084 * 359.77187 * 23 22 21 25 25 C 1.38143 * 120.05451 * 359.95616 * 24 23 22 26 26 N 1.32417 * 120.96485 * 359.97438 * 18 17 16 27 27 C 1.31671 * 121.80458 * 359.74453 * 26 18 17 28 28 H 0.97001 * 120.00084 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.74013 * 179.97438 * 11 10 9 30 30 H 1.08002 * 119.69856 * 179.97438 * 12 11 10 31 31 H 1.07999 * 120.82494 * 359.97438 * 16 15 14 32 32 H 1.07996 * 120.36572 * 180.02562 * 17 16 15 33 33 H 1.07999 * 120.02886 * 0.02562 * 21 20 19 34 34 H 1.07999 * 119.97149 * 180.27648 * 22 21 20 35 35 H 1.08001 * 119.93684 * 179.74535 * 23 22 21 36 36 H 1.07999 * 119.97362 * 179.97438 * 24 23 22 37 37 H 1.07999 * 120.02523 * 180.02562 * 25 24 23 38 38 H 1.07999 * 119.69568 * 180.26733 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4383 2.6527 0.6999 6 1 3.5385 1.4402 0.7000 7 6 2.0077 -1.2137 0.0005 8 1 3.0877 -1.2137 0.0010 9 6 1.3041 -2.4325 0.0005 10 7 -0.0111 -2.4536 -0.2543 11 6 -0.6615 -3.5977 -0.2529 12 6 0.0063 -4.7901 0.0113 13 7 1.3016 -4.7928 0.2650 14 6 1.9819 -3.6508 0.2696 15 6 3.4308 -3.6491 0.5535 16 6 3.9896 -2.6797 1.4006 17 6 5.3485 -2.7192 1.6348 18 6 6.1151 -3.7109 1.0291 19 8 7.4508 -3.7540 1.2553 20 6 8.1864 -4.6614 0.5611 21 6 8.6621 -5.8009 1.1941 22 6 9.4049 -6.7245 0.4846 23 6 9.6837 -6.5089 -0.8524 24 6 9.2162 -5.3713 -1.4841 25 6 8.4682 -4.4472 -0.7806 26 7 5.5584 -4.6127 0.2351 27 6 4.2651 -4.6159 -0.0118 28 1 -0.4850 0.8400 -0.0004 29 1 -1.7217 -3.6115 -0.4583 30 1 -0.5406 -5.7214 0.0095 31 1 3.3713 -1.9211 1.8572 32 1 5.8125 -1.9894 2.2815 33 1 8.4476 -5.9679 2.2393 34 1 9.7715 -7.6138 0.9757 35 1 10.2681 -7.2303 -1.4042 36 1 9.4358 -5.2051 -2.5284 37 1 8.1029 -3.5590 -1.2746 38 1 3.8463 -5.3702 -0.6615 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205329054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:57 Heat of formation + Delta-G solvation = 60.779173 kcal Electronic energy + Delta-G solvation = -24829.489962 eV Core-core repulsion = 21215.829828 eV Total energy + Delta-G solvation = -3613.660134 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.106 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02630 -40.98679 -39.98665 -38.40867 -36.05024 -34.49400 -33.65431 -32.73643 -31.92988 -31.16806 -30.06248 -28.06334 -25.53451 -25.07116 -23.80760 -23.66378 -23.13970 -22.46763 -19.97974 -19.48663 -18.38292 -17.88723 -17.55566 -17.29409 -17.11268 -16.75122 -15.99312 -15.94736 -15.48370 -15.19719 -14.93840 -14.91418 -14.66657 -14.38568 -14.20559 -14.08462 -13.50610 -13.30043 -13.23234 -13.03242 -12.94956 -12.54007 -12.43333 -12.02068 -11.86538 -11.71004 -11.52404 -11.10886 -10.75557 -10.67763 -10.06316 -9.93145 -9.67303 -9.41761 -9.08853 -8.46508 -6.65430 -0.09729 0.16318 0.28461 0.41156 0.73000 1.14817 1.39755 1.50471 1.54581 2.03093 2.15292 2.70555 2.81834 2.92351 3.32663 3.63594 3.73788 3.96304 3.96608 4.06002 4.13960 4.16651 4.21798 4.24141 4.44556 4.48368 4.55153 4.58640 4.72229 4.79574 4.89351 5.04472 5.04868 5.11437 5.16477 5.39748 5.44723 5.46932 5.53069 5.54226 5.76251 5.90560 6.07909 6.40870 6.46987 6.67317 6.87662 7.27296 7.85382 8.23694 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.003609 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.574597 B = 7756.591400 C = 8973.798269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.028 3.972 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.244 1.244 7 C -0.426 4.426 8 H 0.105 0.895 9 C 0.196 3.804 10 N -0.487 5.487 11 C 0.078 3.922 12 C -0.113 4.113 13 N -0.428 5.428 14 C -0.037 4.037 15 C -0.071 4.071 16 C -0.030 4.030 17 C -0.175 4.175 18 C 0.286 3.714 19 O -0.259 6.259 20 C 0.072 3.928 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.137 4.137 26 N -0.533 5.533 27 C 0.139 3.861 28 H 0.288 0.712 29 H 0.162 0.838 30 H 0.164 0.836 31 H 0.151 0.849 32 H 0.167 0.833 33 H 0.131 0.869 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.115 0.885 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.442 -4.961 0.381 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.196 4.196 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.167 1.167 7 C -0.456 4.456 8 H 0.123 0.877 9 C 0.071 3.929 10 N -0.204 5.204 11 C -0.092 4.092 12 C -0.274 4.274 13 N -0.141 5.141 14 C -0.183 4.183 15 C -0.075 4.075 16 C -0.057 4.057 17 C -0.195 4.195 18 C 0.109 3.891 19 O -0.166 6.166 20 C 0.030 3.970 21 C -0.152 4.152 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.155 4.155 26 N -0.255 5.255 27 C -0.017 4.017 28 H 0.099 0.901 29 H 0.179 0.821 30 H 0.181 0.819 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.167 0.833 37 H 0.133 0.867 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.904 -5.271 0.181 15.810 hybrid contribution -1.076 1.154 0.170 1.587 sum 13.829 -4.117 0.350 14.433 Atomic orbital electron populations 1.70076 1.09122 1.30330 1.26826 1.27054 0.95655 1.04640 0.92264 0.85223 0.79689 0.75505 0.79779 1.18956 1.18853 1.16698 1.20078 0.95536 0.89529 1.40446 0.87744 1.19613 0.89403 0.93428 0.90453 1.69470 1.08202 1.26192 1.16526 1.24070 1.01289 0.89914 0.93948 1.23132 0.91298 0.99336 1.13668 1.67771 1.09033 1.29110 1.08146 1.20177 0.93519 0.90473 1.14132 1.19222 0.91898 0.97327 0.99007 1.21738 0.93887 0.96599 0.93440 1.21120 0.92780 1.00380 1.05186 1.20156 0.83633 0.91943 0.93367 1.84517 1.14741 1.55160 1.62138 1.18887 0.95516 0.90787 0.91787 1.21392 1.00340 0.92013 1.01435 1.21384 0.97349 0.98963 0.94762 1.21616 0.99439 0.97613 0.94921 1.21338 0.96836 0.93770 1.00883 1.21446 1.00153 1.00723 0.93224 1.67210 1.14158 1.25716 1.18389 1.22444 0.86382 0.96410 0.96480 0.90089 0.82118 0.81927 0.83125 0.81501 0.85093 0.82506 0.82410 0.83333 0.86709 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.79 11.58 21.86 0.25 -36.54 16 2 C 0.03 1.32 5.49 85.33 0.47 1.78 16 3 Si 0.98 34.42 29.56 68.60 2.03 36.45 16 4 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 6 H -0.24 -8.07 7.11 99.48 0.71 -7.36 16 7 C -0.43 -20.93 7.37 23.35 0.17 -20.76 16 8 H 0.10 4.80 5.45 -2.91 -0.02 4.78 16 9 C 0.20 10.23 6.50 40.35 0.26 10.49 16 10 N -0.49 -25.69 8.16 -187.84 -1.53 -27.22 16 11 C 0.08 3.54 11.22 84.96 0.95 4.50 16 12 C -0.11 -4.91 11.22 84.90 0.95 -3.96 16 13 N -0.43 -20.40 10.30 -182.34 -1.88 -22.27 16 14 C -0.04 -1.80 6.45 42.39 0.27 -1.53 16 15 C -0.07 -3.05 5.31 -19.94 -0.11 -3.16 16 16 C -0.03 -1.17 7.67 22.71 0.17 -1.00 16 17 C -0.17 -5.86 10.02 22.43 0.22 -5.64 16 18 C 0.29 10.22 7.37 84.84 0.63 10.84 16 19 O -0.26 -8.55 9.96 -31.77 -0.32 -8.86 16 20 C 0.07 2.14 5.11 22.52 0.12 2.25 16 21 C -0.13 -3.32 9.99 22.37 0.22 -3.10 16 22 C -0.11 -2.01 10.04 22.25 0.22 -1.79 16 23 C -0.12 -2.05 10.04 22.28 0.22 -1.83 16 24 C -0.11 -2.29 10.04 22.25 0.22 -2.06 16 25 C -0.14 -3.72 9.66 22.37 0.22 -3.50 16 26 N -0.53 -20.34 9.13 -307.61 -2.81 -23.15 16 27 C 0.14 5.64 10.83 85.06 0.92 6.56 16 28 H 0.29 12.79 8.29 -92.71 -0.77 12.02 16 29 H 0.16 6.07 8.06 -2.91 -0.02 6.04 16 30 H 0.16 5.81 8.06 -2.91 -0.02 5.78 16 31 H 0.15 5.81 6.73 -2.91 -0.02 5.79 16 32 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.11 3.21 8.06 -2.91 -0.02 3.19 16 38 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 Total: -1.00 -63.63 337.34 3.00 -60.64 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 1.11 Total: 32.85 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 6.15 Total: -11.89 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -5.97 Total: -109.19 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.32 Total: -8.86 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Total: -63.63 3.00 -60.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205329054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.415 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds