Wall clock time and date at job start Tue Mar 31 2020 12:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00080 * 3 2 1 5 5 H 1.48508 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00013 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 O 1.42901 * 110.87223 * 153.93568 * 12 11 10 15 15 C 1.35695 * 117.00185 * 152.54411 * 14 12 11 16 16 N 1.32227 * 119.95621 * 0.02562 * 15 14 12 17 17 C 1.32360 * 122.22765 * 179.97438 * 16 15 14 18 18 C 1.36456 * 121.54799 * 359.97373 * 17 16 15 19 19 N 1.48026 * 120.52439 * 180.02562 * 18 17 16 20 20 O 1.21800 * 120.00149 * 0.02562 * 19 18 17 21 21 O 1.21808 * 119.99995 * 179.97438 * 19 18 17 22 22 C 1.40186 * 118.95166 * 0.02562 * 18 17 16 23 23 N 1.35247 * 134.75966 * 180.02562 * 22 18 17 24 24 C 1.30316 * 109.63585 * 179.26118 * 23 22 18 25 25 N 1.35869 * 110.08678 * 0.62920 * 24 23 22 26 26 H 0.96997 * 126.35475 * 179.46981 * 25 24 23 27 27 C 1.37990 * 107.28675 * 359.47802 * 25 24 23 28 28 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 29 29 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 30 30 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 31 31 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 32 32 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 33 33 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 34 34 H 1.08002 * 119.22638 * 179.97438 * 17 16 15 35 35 H 1.07992 * 124.95892 * 180.10174 * 24 23 22 36 36 H 1.08998 * 109.88222 * 59.56024 * 28 9 7 37 37 H 1.09005 * 110.01447 * 298.46604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 8 1.1018 -5.8554 0.8764 15 6 1.6615 -6.9425 0.2882 16 7 1.8845 -6.9467 -1.0151 17 6 2.4283 -7.9821 -1.6349 18 6 2.7915 -9.1095 -0.9575 19 7 3.3985 -10.2541 -1.6735 20 8 3.5778 -10.1940 -2.8767 21 8 3.7195 -11.2558 -1.0592 22 6 2.5806 -9.1667 0.4272 23 7 2.8098 -10.0905 1.3881 24 6 2.4322 -9.6228 2.5443 25 7 1.9228 -8.3717 2.3977 26 1 1.5667 -7.8096 3.1035 27 6 2.0058 -8.0495 1.0586 28 6 1.9320 -3.7274 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5998 -1.7589 0.6142 31 1 -0.5264 -2.4851 -1.0194 32 1 -1.3589 -4.3329 0.2768 33 1 -0.3532 -3.8980 1.6994 34 1 2.5884 -7.9334 -2.7019 35 1 2.5051 -10.1553 3.4810 36 1 2.5580 -3.8509 0.8843 37 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227690052.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:59 Heat of formation + Delta-G solvation = 61.957888 kcal Electronic energy + Delta-G solvation = -26172.237953 eV Core-core repulsion = 22147.779668 eV Total energy + Delta-G solvation = -4024.458284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.111 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.02363 -42.90584 -41.32880 -39.54861 -38.07648 -37.51939 -34.73467 -34.18789 -32.67243 -31.80215 -31.08237 -29.17835 -27.57656 -26.61137 -24.99244 -24.58700 -23.14182 -22.22796 -22.00928 -20.72111 -20.21584 -19.77271 -19.13061 -18.75313 -18.61540 -18.13374 -17.42317 -16.94309 -16.71521 -16.41284 -15.84396 -15.63129 -15.36710 -14.86296 -14.66157 -14.37014 -14.07677 -13.76112 -13.42477 -13.01066 -12.72367 -12.63719 -12.57921 -12.48434 -12.30840 -12.17597 -12.09759 -11.93744 -11.75449 -11.64322 -11.48795 -11.31560 -10.79710 -10.58214 -9.80775 -8.98771 -7.83802 -5.29317 -1.45614 -0.32833 0.10751 0.32908 1.27195 1.43598 1.46561 1.48847 1.55126 1.60281 2.11241 2.45438 2.58785 2.68357 3.14358 3.21874 3.28225 3.55911 3.58753 3.70171 3.84933 3.92917 4.07198 4.25573 4.34616 4.51038 4.64142 4.73527 4.81988 4.88694 4.90699 5.25805 5.39861 5.51667 5.66395 5.75540 6.02107 6.13124 6.23819 6.35166 6.61302 7.04033 7.68700 8.30171 9.18050 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.021975 B = 0.002940 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.878244 B = 9521.409051 C =10093.050356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.981 3.019 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.153 3.847 11 C -0.121 4.121 12 C 0.091 3.909 13 H 0.109 0.891 14 O -0.278 6.278 15 C 0.417 3.583 16 N -0.537 5.537 17 C 0.228 3.772 18 C -0.120 4.120 19 N 0.049 4.951 20 O -0.183 6.183 21 O -0.170 6.170 22 C 0.148 3.852 23 N -0.519 5.519 24 C 0.330 3.670 25 N -0.550 5.550 26 H 0.454 0.546 27 C -0.039 4.039 28 C 0.124 3.876 29 H 0.251 0.749 30 H 0.085 0.915 31 H 0.000 1.000 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.212 0.788 35 H 0.293 0.707 36 H 0.027 0.973 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -18.446 7.199 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.375 4.375 8 H 0.096 0.904 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.159 4.159 12 C 0.035 3.965 13 H 0.127 0.873 14 O -0.182 6.182 15 C 0.231 3.769 16 N -0.265 5.265 17 C 0.075 3.925 18 C -0.211 4.211 19 N 0.562 4.438 20 O -0.393 6.393 21 O -0.384 6.384 22 C 0.015 3.985 23 N -0.240 5.240 24 C 0.044 3.956 25 N -0.161 5.161 26 H 0.299 0.701 27 C -0.155 4.155 28 C -0.002 4.002 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.018 0.982 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.308 0.692 36 H 0.045 0.955 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.281 -17.679 7.164 19.077 hybrid contribution 0.362 1.156 0.237 1.235 sum 0.643 -16.522 7.401 18.115 Atomic orbital electron populations 1.69954 1.06071 1.25485 1.57918 1.25595 0.96672 1.00828 1.02078 0.85130 0.77205 0.78664 0.78168 1.20592 1.21632 1.20247 1.19363 0.90986 0.83530 1.43637 0.90367 1.44620 1.02838 1.00310 1.87184 1.21808 0.83931 0.93953 0.97445 1.23087 0.96521 0.94828 1.01491 1.23536 0.95684 0.82432 0.94839 0.87344 1.86330 1.71919 1.22665 1.37277 1.19338 0.85363 0.84760 0.87460 1.68008 1.22466 1.28371 1.07661 1.22250 0.85095 0.83068 1.02078 1.20987 1.17831 0.91911 0.90357 1.43279 0.98168 1.01726 1.00663 1.94497 1.59443 1.88195 0.97166 1.94580 1.53990 1.21101 1.68696 1.18366 0.96933 0.91057 0.92095 1.70776 1.25882 1.28806 0.98507 1.27118 0.87514 0.81121 0.99824 1.43300 1.49952 1.17078 1.05778 0.70087 1.18411 1.13052 0.95885 0.88116 1.21629 0.94622 0.85464 0.98456 0.93949 0.89721 0.98239 0.88146 0.90263 0.77135 0.69250 0.95523 0.95270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -53.73 10.09 21.65 0.22 -53.52 16 2 C -0.06 -3.20 5.49 84.86 0.47 -2.74 16 3 Si 0.98 44.10 29.55 68.60 2.03 46.13 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.25 -13.46 10.27 84.03 0.86 -12.60 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -30.88 3.39 -691.98 -2.35 -33.22 16 10 C 0.15 7.02 5.89 86.85 0.51 7.53 16 11 C -0.12 -3.98 6.82 31.99 0.22 -3.77 16 12 C 0.09 2.89 3.19 31.78 0.10 2.99 16 13 H 0.11 3.36 7.05 -2.39 -0.02 3.34 16 14 O -0.28 -7.36 9.86 -90.14 -0.89 -8.25 16 15 C 0.42 10.31 7.51 84.86 0.64 10.94 16 16 N -0.54 -13.84 8.68 -309.69 -2.69 -16.53 16 17 C 0.23 5.35 10.64 84.20 0.90 6.25 16 18 C -0.12 -3.15 6.87 36.43 0.25 -2.90 16 19 N 0.05 1.45 4.45 -46.32 -0.21 1.25 16 20 O -0.18 -5.37 18.45 18.89 0.35 -5.02 16 21 O -0.17 -5.50 18.30 18.88 0.35 -5.15 16 22 C 0.15 3.60 6.85 39.67 0.27 3.88 16 23 N -0.52 -10.86 10.66 -191.97 -2.05 -12.90 16 24 C 0.33 3.00 12.97 180.05 2.33 5.34 16 25 N -0.55 -6.05 6.22 -190.81 -1.19 -7.24 16 26 H 0.45 2.12 8.96 -92.71 -0.83 1.29 16 27 C -0.04 -0.82 7.30 38.98 0.28 -0.54 16 28 C 0.12 4.97 7.02 86.73 0.61 5.58 16 29 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.08 4.42 5.87 -2.39 -0.01 4.41 16 31 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.21 3.91 7.57 -2.91 -0.02 3.89 16 35 H 0.29 -1.24 8.06 -2.91 -0.02 -1.27 16 36 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 37 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -74.81 326.07 1.34 -73.47 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 0.32 Total: 1.03 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 7.44 Total: 19.97 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -8.26 Total: -122.17 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.20 Total: -18.43 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -74.81 1.34 -73.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227690052.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.423 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds