Wall clock time and date at job start Tue Mar 31 2020 13:19:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30639 * 1
3 3 Si 1.86801 * 119.99651 * 2 1
4 4 H 1.48503 * 109.46874 * 269.99418 * 3 2 1
5 5 H 1.48497 * 109.47203 * 30.00057 * 3 2 1
6 6 H 1.48508 * 109.46921 * 149.99956 * 3 2 1
7 7 C 1.40170 * 120.00099 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1
9 9 C 1.41185 * 119.99939 * 0.02562 * 7 2 1
10 10 N 1.33613 * 119.13639 * 179.97438 * 9 7 2
11 11 C 1.31613 * 120.82798 * 179.97438 * 10 9 7
12 12 C 1.40379 * 119.09664 * 0.02562 * 11 10 9
13 13 C 1.48003 * 120.78608 * 179.97438 * 12 11 10
14 14 C 1.40166 * 120.90360 * 359.97438 * 13 12 11
15 15 C 1.37796 * 119.12384 * 180.02562 * 14 13 12
16 16 N 1.32016 * 120.98651 * 359.74445 * 15 14 13
17 17 C 1.32320 * 121.98472 * 0.53015 * 16 15 14
18 18 O 1.35686 * 119.61534 * 179.75419 * 17 16 15
19 19 C 1.35898 * 117.99880 * 5.54815 * 18 17 16
20 20 C 1.38747 * 120.05603 * 69.96471 * 19 18 17
21 21 C 1.38146 * 119.93855 * 179.97438 * 20 19 18
22 22 C 1.38269 * 120.05952 * 359.97438 * 21 20 19
23 23 C 1.38270 * 120.11397 * 0.27578 * 22 21 20
24 24 C 1.38145 * 120.05522 * 359.49305 * 23 22 21
25 25 C 1.38688 * 120.76614 * 359.46798 * 17 16 15
26 26 C 1.40373 * 118.42168 * 0.24809 * 12 11 10
27 27 N 1.31614 * 119.09909 * 359.51156 * 26 12 11
28 28 H 0.97001 * 120.00006 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.44799 * 180.02562 * 11 10 9
30 30 H 1.07996 * 120.43353 * 359.97438 * 14 13 12
31 31 H 1.08003 * 119.50451 * 180.02562 * 15 14 13
32 32 H 1.07993 * 120.02871 * 359.94590 * 20 19 18
33 33 H 1.08006 * 119.96731 * 179.97438 * 21 20 19
34 34 H 1.07991 * 119.94328 * 180.02562 * 22 21 20
35 35 H 1.07997 * 119.96879 * 179.72594 * 23 22 21
36 36 H 1.08002 * 120.02277 * 180.23211 * 24 23 22
37 37 H 1.08003 * 120.53223 * 180.27903 * 25 17 16
38 38 H 1.08000 * 120.45105 * 179.74647 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4879 2.0464 -1.4001
5 1 1.4377 2.6527 0.7000
6 1 3.5379 1.4403 0.7001
7 6 2.0073 -1.2139 0.0005
8 1 3.0872 -1.2139 0.0010
9 6 1.3013 -2.4366 0.0005
10 7 1.9868 -3.5835 0.0005
11 6 1.3627 -4.7423 0.0010
12 6 -0.0410 -4.7616 0.0010
13 6 -0.7810 -6.0433 0.0010
14 6 -0.0993 -7.2681 0.0005
15 6 -0.8250 -8.4395 0.0000
16 7 -2.1450 -8.4213 0.0050
17 6 -2.8303 -7.2894 0.0004
18 8 -4.1867 -7.3268 0.0009
19 6 -4.7915 -8.5378 0.1222
20 6 -4.7350 -9.2253 1.3260
21 6 -5.3511 -10.4558 1.4468
22 6 -6.0240 -11.0022 0.3695
23 6 -6.0773 -10.3214 -0.8329
24 6 -5.4670 -9.0884 -0.9575
25 6 -2.1784 -6.0653 0.0010
26 6 -0.7260 -3.5364 -0.0049
27 7 -0.0347 -2.4165 -0.0003
28 1 -0.4850 0.8400 -0.0004
29 1 1.9228 -5.6656 0.0015
30 1 0.9804 -7.2932 -0.0003
31 1 -0.3060 -9.3867 0.0000
32 1 -4.2095 -8.7990 2.1677
33 1 -5.3071 -10.9916 2.3835
34 1 -6.5053 -11.9640 0.4661
35 1 -6.5998 -10.7524 -1.6741
36 1 -5.5122 -8.5554 -1.8957
37 1 -2.7416 -5.1437 0.0017
38 1 -1.8058 -3.5130 -0.0092
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001238841870.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:19:15
Heat of formation + Delta-G solvation = 78.787973 kcal
Electronic energy + Delta-G solvation = -24108.843348 eV
Core-core repulsion = 20495.964135 eV
Total energy + Delta-G solvation = -3612.879214 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.106 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.80117 -39.43781 -38.71333 -37.34252 -34.32388 -32.94231 -32.06620 -31.10470
-30.92489 -29.57060 -29.36095 -26.60001 -24.02782 -23.69024 -22.81555 -22.48684
-21.88194 -20.85290 -18.51419 -18.11509 -17.14809 -16.54290 -16.05182 -15.96696
-15.93598 -15.14075 -14.72747 -14.46418 -14.30443 -14.00693 -13.78413 -13.54808
-13.21626 -13.20198 -12.89369 -12.66288 -12.46091 -12.16461 -11.72972 -11.60518
-11.48121 -11.24444 -10.98625 -10.94369 -10.51175 -10.16693 -9.63256 -9.54172
-9.31596 -9.16415 -9.05808 -8.83381 -8.23422 -7.77311 -7.56559 -6.84189
-4.99999 1.06351 1.26173 1.31527 1.56409 2.60791 2.81195 2.89713
2.94102 2.99970 3.09385 3.65899 3.83877 4.15695 4.47750 4.58739
4.80523 4.80575 4.97209 5.24289 5.26779 5.31531 5.41924 5.43216
5.50057 5.63553 5.68272 5.75125 5.84919 5.87097 6.04280 6.11397
6.22475 6.31205 6.35858 6.37015 6.45195 6.64301 6.68919 6.84661
6.95146 7.19709 7.37965 7.65471 7.85645 8.17557 8.23514 8.26028
8.82995 9.79689 9.98996
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.030850 B = 0.002388 C = 0.002266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.396916 B =11723.517583 C =12351.401355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.688 5.688
2 C 0.056 3.944
3 Si 0.925 3.075
4 H -0.264 1.264
5 H -0.272 1.272
6 H -0.256 1.256
7 C -0.362 4.362
8 H 0.100 0.900
9 C 0.375 3.625
10 N -0.591 5.591
11 C 0.200 3.800
12 C -0.343 4.343
13 C 0.111 3.889
14 C -0.229 4.229
15 C 0.140 3.860
16 N -0.560 5.560
17 C 0.317 3.683
18 O -0.255 6.255
19 C 0.110 3.890
20 C -0.118 4.118
21 C -0.107 4.107
22 C -0.127 4.127
23 C -0.108 4.108
24 C -0.122 4.122
25 C -0.213 4.213
26 C 0.192 3.808
27 N -0.508 5.508
28 H 0.282 0.718
29 H 0.135 0.865
30 H 0.132 0.868
31 H 0.151 0.849
32 H 0.123 0.877
33 H 0.125 0.875
34 H 0.123 0.877
35 H 0.126 0.874
36 H 0.128 0.872
37 H 0.137 0.863
38 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.099 -13.532 0.410 15.775
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.307 5.307
2 C -0.174 4.174
3 Si 0.748 3.252
4 H -0.189 1.189
5 H -0.196 1.196
6 H -0.180 1.180
7 C -0.394 4.394
8 H 0.118 0.882
9 C 0.145 3.855
10 N -0.309 5.309
11 C 0.024 3.976
12 C -0.353 4.353
13 C 0.102 3.898
14 C -0.251 4.251
15 C -0.014 4.014
16 N -0.284 5.284
17 C 0.142 3.858
18 O -0.162 6.162
19 C 0.067 3.933
20 C -0.136 4.136
21 C -0.125 4.125
22 C -0.145 4.145
23 C -0.127 4.127
24 C -0.140 4.140
25 C -0.234 4.234
26 C 0.014 3.986
27 N -0.224 5.224
28 H 0.094 0.906
29 H 0.152 0.848
30 H 0.150 0.850
31 H 0.168 0.832
32 H 0.141 0.859
33 H 0.143 0.857
34 H 0.141 0.859
35 H 0.144 0.856
36 H 0.146 0.854
37 H 0.155 0.845
38 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -8.322 -12.851 0.406 15.315
hybrid contribution 0.225 0.368 0.010 0.432
sum -8.097 -12.482 0.416 14.885
Atomic orbital electron populations
1.70097 1.07580 1.29141 1.23910 1.26303 0.95215 1.02023 0.93809
0.86017 0.80398 0.79093 0.79738 1.18868 1.19624 1.17970 1.19658
0.95311 0.87809 1.36631 0.88224 1.20001 0.86043 0.90931 0.88570
1.68677 1.40655 0.98410 1.23193 1.22697 0.90293 0.95965 0.88675
1.19565 0.95261 0.92514 1.28009 1.18762 0.90887 0.92898 0.87228
1.21972 1.01226 0.92426 1.09438 1.22075 0.87846 0.97886 0.93626
1.67175 1.10397 1.28809 1.21997 1.19631 0.82216 0.90192 0.93754
1.84583 1.16350 1.28076 1.87188 1.18565 0.95746 0.85543 0.93404
1.21324 0.99815 0.95281 0.97207 1.20982 0.97532 0.95013 0.99022
1.21149 0.99930 1.00122 0.93314 1.20968 0.99580 0.94222 0.97881
1.21140 0.99847 0.95422 0.97610 1.20944 0.93954 0.96254 1.12238
1.23094 0.99236 0.87791 0.88498 1.69375 1.08048 1.26684 1.18254
0.90608 0.84759 0.84996 0.83194 0.85862 0.85739 0.85921 0.85575
0.85441 0.84541 0.84857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.69 -16.83 11.40 55.56 0.63 -16.19 16
2 C 0.06 1.31 5.50 -17.33 -0.10 1.22 16
3 Si 0.93 17.01 29.56 -169.99 -5.02 11.99 16
4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16
5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16
6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16
7 C -0.36 -9.21 9.36 -37.74 -0.35 -9.57 16
8 H 0.10 2.41 7.85 -52.49 -0.41 1.99 16
9 C 0.38 10.00 7.36 -158.18 -1.16 8.83 16
10 N -0.59 -14.77 10.34 -12.41 -0.13 -14.90 16
11 C 0.20 4.33 10.72 -16.84 -0.18 4.15 16
12 C -0.34 -7.23 5.93 -104.29 -0.62 -7.85 16
13 C 0.11 2.03 5.91 -104.60 -0.62 1.42 16
14 C -0.23 -3.61 9.52 -39.02 -0.37 -3.98 16
15 C 0.14 2.06 11.16 -17.63 -0.20 1.86 16
16 N -0.56 -9.24 8.98 -13.42 -0.12 -9.36 16
17 C 0.32 5.46 7.32 -17.18 -0.13 5.34 16
18 O -0.26 -4.21 9.97 -2.95 -0.03 -4.24 16
19 C 0.11 1.59 5.26 -39.21 -0.21 1.38 16
20 C -0.12 -1.53 9.39 -39.43 -0.37 -1.90 16
21 C -0.11 -1.13 10.04 -39.60 -0.40 -1.53 16
22 C -0.13 -1.21 10.04 -39.56 -0.40 -1.61 16
23 C -0.11 -1.09 10.04 -39.60 -0.40 -1.49 16
24 C -0.12 -1.51 9.99 -39.43 -0.39 -1.91 16
25 C -0.21 -3.77 9.46 -38.84 -0.37 -4.14 16
26 C 0.19 4.40 10.72 -16.84 -0.18 4.22 16
27 N -0.51 -13.30 7.83 -12.41 -0.10 -13.40 16
28 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16
29 H 0.14 2.39 6.42 -52.49 -0.34 2.06 16
30 H 0.13 1.82 6.42 -52.49 -0.34 1.48 16
31 H 0.15 1.71 8.06 -52.48 -0.42 1.28 16
32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16
33 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16
34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16
35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16
36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16
37 H 0.14 2.32 6.42 -52.48 -0.34 1.98 16
38 H 0.13 2.70 6.42 -52.49 -0.34 2.37 16
LS Contribution 337.29 15.07 5.08 5.08
Total: -1.00 -29.42 337.29 -9.55 -38.97
By element:
Atomic # 1 Polarization: 11.03 SS G_CDS: -3.43 Total: 7.60 kcal
Atomic # 6 Polarization: 0.89 SS G_CDS: -6.43 Total: -5.55 kcal
Atomic # 7 Polarization: -54.14 SS G_CDS: 0.29 Total: -53.86 kcal
Atomic # 8 Polarization: -4.21 SS G_CDS: -0.03 Total: -4.24 kcal
Atomic # 14 Polarization: 17.01 SS G_CDS: -5.02 Total: 11.99 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -29.42 -9.55 -38.97 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001238841870.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.760 kcal
(2) G-P(sol) polarization free energy of solvation -29.423 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.337 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds