Wall clock time and date at job start Tue Mar 31 2020 13:19:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30639 * 1
3 3 Si 1.86801 * 119.99651 * 2 1
4 4 H 1.48503 * 109.46874 * 269.99418 * 3 2 1
5 5 H 1.48497 * 109.47203 * 30.00057 * 3 2 1
6 6 H 1.48508 * 109.46921 * 149.99956 * 3 2 1
7 7 C 1.40170 * 120.00099 * 179.97438 * 2 1 3
8 8 H 1.07999 * 120.00167 * 180.02562 * 7 2 1
9 9 C 1.41185 * 119.99939 * 0.02562 * 7 2 1
10 10 N 1.33613 * 119.13639 * 179.97438 * 9 7 2
11 11 C 1.31613 * 120.82798 * 179.97438 * 10 9 7
12 12 C 1.40379 * 119.09664 * 0.02562 * 11 10 9
13 13 C 1.48003 * 120.78608 * 179.97438 * 12 11 10
14 14 C 1.40166 * 120.90360 * 359.97438 * 13 12 11
15 15 C 1.37796 * 119.12384 * 180.02562 * 14 13 12
16 16 N 1.32016 * 120.98651 * 359.74445 * 15 14 13
17 17 C 1.32320 * 121.98472 * 0.53015 * 16 15 14
18 18 O 1.35686 * 119.61534 * 179.75419 * 17 16 15
19 19 C 1.35898 * 117.99880 * 5.54815 * 18 17 16
20 20 C 1.38747 * 120.05603 * 69.96471 * 19 18 17
21 21 C 1.38146 * 119.93855 * 179.97438 * 20 19 18
22 22 C 1.38269 * 120.05952 * 359.97438 * 21 20 19
23 23 C 1.38270 * 120.11397 * 0.27578 * 22 21 20
24 24 C 1.38145 * 120.05522 * 359.49305 * 23 22 21
25 25 C 1.38688 * 120.76614 * 359.46798 * 17 16 15
26 26 C 1.40373 * 118.42168 * 0.24809 * 12 11 10
27 27 N 1.31614 * 119.09909 * 359.51156 * 26 12 11
28 28 H 0.97001 * 120.00006 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.44799 * 180.02562 * 11 10 9
30 30 H 1.07996 * 120.43353 * 359.97438 * 14 13 12
31 31 H 1.08003 * 119.50451 * 180.02562 * 15 14 13
32 32 H 1.07993 * 120.02871 * 359.94590 * 20 19 18
33 33 H 1.08006 * 119.96731 * 179.97438 * 21 20 19
34 34 H 1.07991 * 119.94328 * 180.02562 * 22 21 20
35 35 H 1.07997 * 119.96879 * 179.72594 * 23 22 21
36 36 H 1.08002 * 120.02277 * 180.23211 * 24 23 22
37 37 H 1.08003 * 120.53223 * 180.27903 * 25 17 16
38 38 H 1.08000 * 120.45105 * 179.74647 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2403 1.6178 0.0000
4 1 2.4879 2.0464 -1.4001
5 1 1.4377 2.6527 0.7000
6 1 3.5379 1.4403 0.7001
7 6 2.0073 -1.2139 0.0005
8 1 3.0872 -1.2139 0.0010
9 6 1.3013 -2.4366 0.0005
10 7 1.9868 -3.5835 0.0005
11 6 1.3627 -4.7423 0.0010
12 6 -0.0410 -4.7616 0.0010
13 6 -0.7810 -6.0433 0.0010
14 6 -0.0993 -7.2681 0.0005
15 6 -0.8250 -8.4395 0.0000
16 7 -2.1450 -8.4213 0.0050
17 6 -2.8303 -7.2894 0.0004
18 8 -4.1867 -7.3268 0.0009
19 6 -4.7915 -8.5378 0.1222
20 6 -4.7350 -9.2253 1.3260
21 6 -5.3511 -10.4558 1.4468
22 6 -6.0240 -11.0022 0.3695
23 6 -6.0773 -10.3214 -0.8329
24 6 -5.4670 -9.0884 -0.9575
25 6 -2.1784 -6.0653 0.0010
26 6 -0.7260 -3.5364 -0.0049
27 7 -0.0347 -2.4165 -0.0003
28 1 -0.4850 0.8400 -0.0004
29 1 1.9228 -5.6656 0.0015
30 1 0.9804 -7.2932 -0.0003
31 1 -0.3060 -9.3867 0.0000
32 1 -4.2095 -8.7990 2.1677
33 1 -5.3071 -10.9916 2.3835
34 1 -6.5053 -11.9640 0.4661
35 1 -6.5998 -10.7524 -1.6741
36 1 -5.5122 -8.5554 -1.8957
37 1 -2.7416 -5.1437 0.0017
38 1 -1.8058 -3.5130 -0.0092
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001238841870.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:19:14
Heat of formation + Delta-G solvation = 62.163621 kcal
Electronic energy + Delta-G solvation = -24109.564234 eV
Core-core repulsion = 20495.964135 eV
Total energy + Delta-G solvation = -3613.600100 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 319.106 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-42.01082 -40.99419 -40.03029 -38.43098 -36.02207 -34.50586 -33.86404 -32.14213
-31.91122 -31.21320 -30.43648 -28.30574 -25.48444 -25.14184 -23.96996 -23.64540
-23.35389 -22.15406 -19.99361 -19.60009 -18.52334 -17.78961 -17.49660 -17.20627
-17.09883 -16.63916 -16.00287 -15.85005 -15.66355 -15.27555 -14.92038 -14.84555
-14.60819 -14.51006 -14.38480 -14.14108 -13.59186 -13.26017 -13.20573 -12.97085
-12.80051 -12.62153 -12.53880 -12.00219 -11.90433 -11.66672 -11.32057 -11.31747
-11.02156 -10.54777 -9.93298 -9.83765 -9.50982 -9.38684 -9.36082 -8.57624
-6.84469 -0.21465 0.10719 0.30678 0.40776 0.95910 1.07527 1.38332
1.52197 1.55879 2.02392 2.14196 2.60334 2.89943 2.96651 3.39967
3.82796 3.83144 3.87709 3.91145 3.96160 3.96590 4.09742 4.22726
4.23811 4.28418 4.31468 4.48470 4.57080 4.72411 4.77336 4.91368
4.98418 5.01549 5.04656 5.16920 5.40003 5.45268 5.52015 5.53335
5.63284 5.68503 5.92065 6.01607 6.37315 6.45329 6.48134 6.95355
7.03808 8.07160 8.20894
Molecular weight = 319.11amu
Principal moments of inertia in cm(-1)
A = 0.030850 B = 0.002388 C = 0.002266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 907.396916 B =11723.517583 C =12351.401355
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.729 5.729
2 C 0.017 3.983
3 Si 1.004 2.996
4 H -0.258 1.258
5 H -0.261 1.261
6 H -0.252 1.252
7 C -0.402 4.402
8 H 0.100 0.900
9 C 0.349 3.651
10 N -0.615 5.615
11 C 0.192 3.808
12 C -0.330 4.330
13 C 0.091 3.909
14 C -0.221 4.221
15 C 0.146 3.854
16 N -0.559 5.559
17 C 0.311 3.689
18 O -0.268 6.268
19 C 0.073 3.927
20 C -0.134 4.134
21 C -0.107 4.107
22 C -0.118 4.118
23 C -0.105 4.105
24 C -0.136 4.136
25 C -0.221 4.221
26 C 0.173 3.827
27 N -0.541 5.541
28 H 0.290 0.710
29 H 0.175 0.825
30 H 0.157 0.843
31 H 0.193 0.807
32 H 0.113 0.887
33 H 0.150 0.850
34 H 0.159 0.841
35 H 0.157 0.843
36 H 0.128 0.872
37 H 0.132 0.868
38 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.555 -16.542 0.377 18.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.349 5.349
2 C -0.208 4.208
3 Si 0.822 3.178
4 H -0.182 1.182
5 H -0.185 1.185
6 H -0.176 1.176
7 C -0.435 4.435
8 H 0.118 0.882
9 C 0.117 3.883
10 N -0.334 5.334
11 C 0.017 3.983
12 C -0.340 4.340
13 C 0.082 3.918
14 C -0.241 4.241
15 C -0.008 4.008
16 N -0.283 5.283
17 C 0.136 3.864
18 O -0.175 6.175
19 C 0.031 3.969
20 C -0.153 4.153
21 C -0.125 4.125
22 C -0.136 4.136
23 C -0.123 4.123
24 C -0.155 4.155
25 C -0.242 4.242
26 C -0.004 4.004
27 N -0.257 5.257
28 H 0.102 0.898
29 H 0.192 0.808
30 H 0.174 0.826
31 H 0.210 0.790
32 H 0.131 0.869
33 H 0.168 0.832
34 H 0.177 0.823
35 H 0.174 0.826
36 H 0.146 0.854
37 H 0.150 0.850
38 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -8.824 -15.928 0.373 18.213
hybrid contribution 0.145 0.869 0.022 0.881
sum -8.679 -15.059 0.395 17.386
Atomic orbital electron populations
1.70159 1.09208 1.30551 1.25027 1.27255 0.95972 1.05097 0.92521
0.84873 0.78872 0.74087 0.79944 1.18202 1.18537 1.17577 1.19958
0.95550 0.88820 1.39212 0.88244 1.20420 0.86579 0.92022 0.89316
1.68705 1.41136 0.99035 1.24549 1.23333 0.90873 0.96442 0.87666
1.19759 0.95425 0.93147 1.25648 1.18710 0.91072 0.92713 0.89263
1.22253 1.02508 0.91524 1.07811 1.22766 0.87237 0.99238 0.91601
1.67300 1.11282 1.28406 1.21265 1.19721 0.82953 0.90120 0.93651
1.84565 1.15976 1.29881 1.87111 1.18937 0.97381 0.85679 0.94922
1.21383 1.00937 0.96490 0.96467 1.21332 0.96601 0.93952 1.00599
1.21611 0.98507 1.01115 0.92369 1.21368 0.98588 0.93022 0.99275
1.21333 1.00321 0.96586 0.97229 1.20990 0.94105 0.96703 1.12418
1.23473 1.00077 0.88234 0.88587 1.69342 1.08290 1.28200 1.19894
0.89832 0.80810 0.82557 0.79008 0.86904 0.83181 0.82336 0.82551
0.85398 0.84986 0.83471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.73 -37.22 11.40 21.86 0.25 -36.97 16
2 C 0.02 0.83 5.50 85.34 0.47 1.30 16
3 Si 1.00 35.57 29.56 68.60 2.03 37.60 16
4 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16
5 H -0.26 -8.69 7.11 99.48 0.71 -7.99 16
6 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16
7 C -0.40 -21.47 9.36 23.46 0.22 -21.25 16
8 H 0.10 5.04 7.85 -2.91 -0.02 5.02 16
9 C 0.35 19.45 7.36 134.95 0.99 20.44 16
10 N -0.62 -31.57 10.34 -193.16 -2.00 -33.57 16
11 C 0.19 8.25 10.72 85.25 0.91 9.17 16
12 C -0.33 -14.07 5.93 -19.65 -0.12 -14.18 16
13 C 0.09 3.29 5.91 -19.85 -0.12 3.17 16
14 C -0.22 -6.37 9.52 22.63 0.22 -6.15 16
15 C 0.15 3.84 11.16 84.56 0.94 4.78 16
16 N -0.56 -17.47 8.98 -309.20 -2.78 -20.25 16
17 C 0.31 10.65 7.32 84.73 0.62 11.27 16
18 O -0.27 -9.03 9.97 -33.47 -0.33 -9.37 16
19 C 0.07 2.08 5.26 22.51 0.12 2.19 16
20 C -0.13 -3.37 9.39 22.37 0.21 -3.16 16
21 C -0.11 -1.95 10.04 22.26 0.22 -1.73 16
22 C -0.12 -1.79 10.04 22.28 0.22 -1.56 16
23 C -0.10 -1.79 10.04 22.26 0.22 -1.56 16
24 C -0.14 -3.23 9.99 22.37 0.22 -3.01 16
25 C -0.22 -7.92 9.46 22.75 0.22 -7.71 16
26 C 0.17 8.24 10.72 85.25 0.91 9.15 16
27 N -0.54 -29.75 7.83 -193.16 -1.51 -31.26 16
28 H 0.29 13.12 8.29 -92.71 -0.77 12.35 16
29 H 0.18 5.84 6.42 -2.91 -0.02 5.82 16
30 H 0.16 3.71 6.42 -2.91 -0.02 3.69 16
31 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16
32 H 0.11 2.95 8.06 -2.91 -0.02 2.93 16
33 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16
34 H 0.16 1.29 8.06 -2.92 -0.02 1.26 16
35 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16
36 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16
37 H 0.13 4.71 6.42 -2.91 -0.02 4.69 16
38 H 0.15 6.32 6.42 -2.91 -0.02 6.30 16
Total: -1.00 -68.09 337.29 3.26 -64.83
By element:
Atomic # 1 Polarization: 26.72 SS G_CDS: 1.11 Total: 27.83 kcal
Atomic # 6 Polarization: -5.32 SS G_CDS: 6.49 Total: 1.17 kcal
Atomic # 7 Polarization: -116.02 SS G_CDS: -6.04 Total: -122.06 kcal
Atomic # 8 Polarization: -9.03 SS G_CDS: -0.33 Total: -9.37 kcal
Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal
Total: -68.09 3.26 -64.83 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001238841870.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.994 kcal
(2) G-P(sol) polarization free energy of solvation -68.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) 62.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds