Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47150 * 74.99208 * 3 2 1 5 5 C 1.42899 * 113.99997 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47127 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.46952 * 64.99977 * 6 5 4 8 8 C 1.46502 * 119.99687 * 269.99958 * 7 6 5 9 9 C 1.34766 * 119.99986 * 90.00338 * 7 6 5 10 10 O 1.21555 * 120.00357 * 354.64726 * 9 7 6 11 11 C 1.47862 * 120.00051 * 174.64467 * 9 7 6 12 12 C 1.39673 * 120.10295 * 329.41698 * 11 9 7 13 13 C 1.38034 * 120.04008 * 180.02562 * 12 11 9 14 14 C 1.38183 * 120.24717 * 359.67722 * 13 12 11 15 15 C 1.39176 * 120.19635 * 0.59964 * 14 13 12 16 16 S 1.76198 * 120.01924 * 179.69562 * 15 14 13 17 17 C 1.76203 * 100.00208 * 264.83036 * 16 15 14 18 18 H 1.08000 * 119.99616 * 5.02524 * 17 16 15 19 19 C 1.38725 * 120.00039 * 185.02222 * 17 16 15 20 20 N 1.31634 * 119.99887 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00170 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47135 * 89.99974 * 21 19 17 23 23 H 1.48505 * 109.47124 * 210.00166 * 21 19 17 24 24 H 1.48506 * 109.46975 * 329.99695 * 21 19 17 25 25 C 1.38881 * 119.96390 * 359.42511 * 15 14 13 26 26 H 4.38444 * 5.44425 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47422 * 314.99216 * 3 2 1 28 28 H 1.08999 * 109.47259 * 194.99145 * 3 2 1 29 29 H 1.08997 * 109.47420 * 60.00340 * 5 4 3 30 30 H 1.09003 * 109.47018 * 299.99899 * 5 4 3 31 31 H 1.09006 * 109.47072 * 304.99909 * 6 5 4 32 32 H 1.09002 * 109.47047 * 184.99944 * 6 5 4 33 33 H 1.09006 * 109.46777 * 271.86644 * 8 7 6 34 34 H 1.08997 * 109.46968 * 31.86382 * 8 7 6 35 35 H 1.08994 * 109.46680 * 151.86821 * 8 7 6 36 36 H 1.08002 * 119.97774 * 0.02562 * 12 11 9 37 37 H 1.08009 * 119.87787 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.90077 * 180.29662 * 14 13 12 39 39 H 0.96995 * 119.99719 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.12638 * 180.25118 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3480 -1.3013 5 6 4.5471 -0.3760 -1.4105 6 6 4.9418 -0.7581 -2.8385 7 7 4.5027 0.2898 -3.7634 8 6 3.1727 0.2182 -4.3734 9 6 5.3223 1.3196 -4.0531 10 8 6.3855 1.4317 -3.4745 11 6 4.9285 2.3132 -5.0748 12 6 4.1237 1.9307 -6.1503 13 6 3.7572 2.8592 -7.1037 14 6 4.1782 4.1709 -6.9958 15 6 4.9852 4.5618 -5.9314 16 16 5.5259 6.2338 -5.8028 17 6 7.1045 6.1052 -6.5751 18 1 7.4109 5.1726 -7.0254 19 6 7.9536 7.2018 -6.6047 20 7 9.1326 7.1059 -7.1821 21 14 7.4238 8.8147 -5.8252 22 1 7.8465 8.8389 -4.4020 23 1 8.0574 9.9460 -6.5492 24 1 5.9463 8.9413 -5.9052 25 6 5.3594 3.6345 -4.9676 26 1 -1.0499 0.0001 -0.0002 27 1 3.0097 -0.7257 0.7268 28 1 3.0089 0.9935 0.2658 29 1 4.9506 -1.1100 -0.7130 30 1 4.9490 0.6092 -1.1741 31 1 4.4667 -1.7018 -3.1066 32 1 6.0247 -0.8662 -2.8995 33 1 3.2268 -0.3600 -5.2959 34 1 2.4815 -0.2643 -3.6823 35 1 2.8203 1.2253 -4.5959 36 1 3.7879 0.9078 -6.2361 37 1 3.1344 2.5607 -7.9341 38 1 3.8842 4.8938 -7.7424 39 1 9.7264 7.8725 -7.2025 40 1 5.9821 3.9359 -4.1384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001306014515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = 15.395770 kcal Electronic energy + Delta-G solvation = -23248.121185 eV Core-core repulsion = 19735.644279 eV Total energy + Delta-G solvation = -3512.476906 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32563 -38.53062 -37.76461 -35.67534 -33.60963 -32.47981 -31.67623 -30.66996 -29.66941 -27.34374 -26.58049 -25.66034 -24.13749 -22.52858 -22.11949 -19.71508 -18.79485 -18.05711 -17.21610 -16.90548 -16.58478 -16.21195 -15.98545 -15.58629 -15.09684 -14.91535 -14.75319 -14.29946 -13.88226 -13.37727 -13.23147 -13.03199 -12.88305 -12.80804 -12.60155 -12.45835 -12.31721 -11.70724 -11.55330 -11.26487 -11.15746 -11.09066 -10.89585 -10.84572 -10.58951 -9.96676 -9.90187 -9.73564 -9.14595 -9.06242 -8.80947 -8.58570 -8.11004 -7.12154 -6.30989 -4.06519 1.19403 1.61978 2.16697 2.46559 2.77954 2.96864 2.99823 3.27666 3.39058 3.51427 3.55582 4.02916 4.20003 4.27279 4.55138 4.77756 4.85221 4.91112 4.93205 5.00950 5.02591 5.07444 5.08008 5.18700 5.28386 5.38232 5.39242 5.54964 5.59799 5.68328 5.72503 5.81950 5.94531 6.21776 6.38313 6.54856 6.61747 6.75821 6.85124 7.13997 7.21975 7.32092 7.93316 8.20733 8.47658 9.12720 10.78551 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002896 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.274711 B = 9666.967061 C = 9851.513528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.191 4.191 3 C 0.172 3.828 4 O -0.380 6.380 5 C 0.044 3.956 6 C 0.122 3.878 7 N -0.611 5.611 8 C 0.076 3.924 9 C 0.564 3.436 10 O -0.533 6.533 11 C -0.150 4.150 12 C -0.095 4.095 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.085 4.085 16 S -0.114 6.114 17 C -0.508 4.508 18 H 0.091 0.909 19 C 0.095 3.905 20 N -0.876 5.876 21 Si 0.858 3.142 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.239 1.239 25 C -0.020 4.020 26 H 0.221 0.779 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.272 0.728 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 -16.992 9.755 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.191 4.191 3 C 0.096 3.904 4 O -0.300 6.300 5 C -0.033 4.033 6 C -0.001 4.001 7 N -0.344 5.344 8 C -0.066 4.066 9 C 0.354 3.646 10 O -0.410 6.410 11 C -0.155 4.155 12 C -0.113 4.113 13 C -0.161 4.161 14 C -0.075 4.075 15 C -0.195 4.195 16 S 0.120 5.880 17 C -0.655 4.655 18 H 0.109 0.891 19 C -0.114 4.114 20 N -0.512 5.512 21 Si 0.683 3.317 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.163 1.163 25 C -0.042 4.042 26 H 0.238 0.762 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.150 0.850 39 H 0.082 0.918 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.044 -15.908 10.314 24.836 hybrid contribution 0.590 -0.324 -0.055 0.675 sum -15.454 -16.232 10.258 24.648 Atomic orbital electron populations 1.24971 0.95893 1.00712 0.97835 1.22561 0.93899 1.00671 1.01994 1.19059 0.84692 1.00551 0.86081 1.87920 1.21638 1.90781 1.29621 1.23072 0.80556 1.01634 0.98071 1.21489 1.01403 0.90505 0.86669 1.47622 1.16576 1.24085 1.46143 1.22195 0.83395 1.03276 0.97756 1.18538 0.83532 0.80656 0.81891 1.90780 1.23479 1.74466 1.52276 1.19766 1.03622 0.94468 0.97602 1.21676 0.95974 1.00011 0.93658 1.21069 1.02190 0.93450 0.99361 1.21877 0.94068 0.95689 0.95819 1.22146 1.00318 1.00524 0.96556 1.83032 1.23709 1.01656 1.79624 1.22250 0.98769 1.03060 1.41381 0.89053 1.24749 0.93811 0.98602 0.94269 1.69934 1.07687 1.31480 1.42118 0.86733 0.81402 0.83251 0.80362 1.19079 1.19807 1.16340 1.21815 0.94094 0.90543 0.97741 0.76195 0.90913 0.90783 0.92001 0.92050 0.89565 0.88065 0.92641 0.90420 0.90071 0.84990 0.85659 0.85011 0.91830 0.84664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 19.25 29.55 0.57 -0.87 16 2 C -0.19 -1.85 13.73 -37.12 -0.51 -2.36 16 3 C 0.17 1.48 6.41 34.37 0.22 1.70 16 4 O -0.38 -3.87 9.10 -35.23 -0.32 -4.19 16 5 C 0.04 0.41 6.28 37.16 0.23 0.65 16 6 C 0.12 1.20 5.78 -4.04 -0.02 1.18 16 7 N -0.61 -7.45 2.84 -182.68 -0.52 -7.97 16 8 C 0.08 0.73 8.60 59.85 0.51 1.24 16 9 C 0.56 9.23 7.42 -12.33 -0.09 9.14 16 10 O -0.53 -10.51 16.36 5.32 0.09 -10.42 16 11 C -0.15 -2.55 5.31 -104.99 -0.56 -3.11 16 12 C -0.09 -1.32 7.60 -39.12 -0.30 -1.62 16 13 C -0.14 -2.01 10.02 -39.68 -0.40 -2.40 16 14 C -0.05 -0.95 9.79 -39.25 -0.38 -1.33 16 15 C -0.08 -1.78 5.45 -39.00 -0.21 -2.00 16 16 S -0.11 -2.79 19.38 -107.50 -2.08 -4.87 16 17 C -0.51 -14.75 10.01 30.91 0.31 -14.45 16 18 H 0.09 2.90 8.02 -52.49 -0.42 2.48 16 19 C 0.09 2.75 5.50 -17.46 -0.10 2.66 16 20 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 21 Si 0.86 21.17 27.74 -169.99 -4.71 16.45 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 25 C -0.02 -0.41 9.35 -38.91 -0.36 -0.77 16 26 H 0.22 0.97 7.80 -54.10 -0.42 0.55 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.10 1.05 7.50 -51.93 -0.39 0.66 16 33 H 0.06 0.42 6.82 -51.93 -0.35 0.07 16 34 H 0.08 0.70 7.08 -51.93 -0.37 0.33 16 35 H 0.08 0.84 5.76 -51.93 -0.30 0.54 16 36 H 0.13 1.40 4.93 -52.49 -0.26 1.14 16 37 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.14 2.92 7.93 -52.49 -0.42 2.50 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -34.80 361.73 -7.45 -42.25 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.04 Total: 1.45 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.09 Total: -12.34 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.26 Total: -33.79 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.23 Total: -14.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.45 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.08 Total: -4.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.80 -7.45 -42.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306014515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.649 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds