Wall clock time and date at job start Tue Mar 31 2020 12:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47150 * 74.99208 * 3 2 1 5 5 C 1.42899 * 113.99997 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47127 * 180.02562 * 5 4 3 7 7 N 1.46505 * 109.46952 * 64.99977 * 6 5 4 8 8 C 1.46502 * 119.99687 * 269.99958 * 7 6 5 9 9 C 1.34766 * 119.99986 * 90.00338 * 7 6 5 10 10 O 1.21555 * 120.00357 * 354.64726 * 9 7 6 11 11 C 1.47862 * 120.00051 * 174.64467 * 9 7 6 12 12 C 1.39673 * 120.10295 * 329.41698 * 11 9 7 13 13 C 1.38034 * 120.04008 * 180.02562 * 12 11 9 14 14 C 1.38183 * 120.24717 * 359.67722 * 13 12 11 15 15 C 1.39176 * 120.19635 * 0.59964 * 14 13 12 16 16 S 1.76198 * 120.01924 * 179.69562 * 15 14 13 17 17 C 1.76203 * 100.00208 * 264.83036 * 16 15 14 18 18 H 1.08000 * 119.99616 * 5.02524 * 17 16 15 19 19 C 1.38725 * 120.00039 * 185.02222 * 17 16 15 20 20 N 1.31634 * 119.99887 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00170 * 0.02562 * 19 17 16 22 22 H 1.48492 * 109.47135 * 89.99974 * 21 19 17 23 23 H 1.48505 * 109.47124 * 210.00166 * 21 19 17 24 24 H 1.48506 * 109.46975 * 329.99695 * 21 19 17 25 25 C 1.38881 * 119.96390 * 359.42511 * 15 14 13 26 26 H 4.38444 * 5.44425 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47422 * 314.99216 * 3 2 1 28 28 H 1.08999 * 109.47259 * 194.99145 * 3 2 1 29 29 H 1.08997 * 109.47420 * 60.00340 * 5 4 3 30 30 H 1.09003 * 109.47018 * 299.99899 * 5 4 3 31 31 H 1.09006 * 109.47072 * 304.99909 * 6 5 4 32 32 H 1.09002 * 109.47047 * 184.99944 * 6 5 4 33 33 H 1.09006 * 109.46777 * 271.86644 * 8 7 6 34 34 H 1.08997 * 109.46968 * 31.86382 * 8 7 6 35 35 H 1.08994 * 109.46680 * 151.86821 * 8 7 6 36 36 H 1.08002 * 119.97774 * 0.02562 * 12 11 9 37 37 H 1.08009 * 119.87787 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.90077 * 180.29662 * 14 13 12 39 39 H 0.96995 * 119.99719 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.12638 * 180.25118 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1225 -0.3480 -1.3013 5 6 4.5471 -0.3760 -1.4105 6 6 4.9418 -0.7581 -2.8385 7 7 4.5027 0.2898 -3.7634 8 6 3.1727 0.2182 -4.3734 9 6 5.3223 1.3196 -4.0531 10 8 6.3855 1.4317 -3.4745 11 6 4.9285 2.3132 -5.0748 12 6 4.1237 1.9307 -6.1503 13 6 3.7572 2.8592 -7.1037 14 6 4.1782 4.1709 -6.9958 15 6 4.9852 4.5618 -5.9314 16 16 5.5259 6.2338 -5.8028 17 6 7.1045 6.1052 -6.5751 18 1 7.4109 5.1726 -7.0254 19 6 7.9536 7.2018 -6.6047 20 7 9.1326 7.1059 -7.1821 21 14 7.4238 8.8147 -5.8252 22 1 7.8465 8.8389 -4.4020 23 1 8.0574 9.9460 -6.5492 24 1 5.9463 8.9413 -5.9052 25 6 5.3594 3.6345 -4.9676 26 1 -1.0499 0.0001 -0.0002 27 1 3.0097 -0.7257 0.7268 28 1 3.0089 0.9935 0.2658 29 1 4.9506 -1.1100 -0.7130 30 1 4.9490 0.6092 -1.1741 31 1 4.4667 -1.7018 -3.1066 32 1 6.0247 -0.8662 -2.8995 33 1 3.2268 -0.3600 -5.2959 34 1 2.4815 -0.2643 -3.6823 35 1 2.8203 1.2253 -4.5959 36 1 3.7879 0.9078 -6.2361 37 1 3.1344 2.5607 -7.9341 38 1 3.8842 4.8938 -7.7424 39 1 9.7264 7.8725 -7.2025 40 1 5.9821 3.9359 -4.1384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001306014515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:09 Heat of formation + Delta-G solvation = -7.157544 kcal Electronic energy + Delta-G solvation = -23249.099170 eV Core-core repulsion = 19735.644279 eV Total energy + Delta-G solvation = -3513.454891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.52037 -39.49945 -38.88652 -36.75382 -34.72753 -34.28612 -32.79541 -32.03146 -30.65824 -28.10427 -27.92616 -27.46350 -25.18391 -23.85349 -23.24208 -20.94284 -19.87586 -19.40171 -18.54804 -17.95178 -17.51079 -17.34370 -17.13717 -16.90658 -16.60744 -16.23540 -15.81156 -15.50999 -15.08332 -14.96751 -14.61366 -14.27766 -13.99609 -13.89254 -13.64624 -13.50306 -13.38048 -13.24013 -13.08758 -12.78326 -12.62201 -12.32149 -12.24078 -11.85479 -11.56782 -11.54209 -11.23528 -11.18968 -10.84311 -10.56136 -10.04011 -9.72389 -9.69792 -9.15319 -8.54668 -6.29148 -0.15624 0.19946 1.05125 1.30299 1.42836 1.50057 1.57835 1.75965 1.82540 1.92849 2.20716 2.53872 2.83248 2.88694 2.93334 3.43963 3.60443 3.91492 3.95440 4.04576 4.10549 4.27068 4.29239 4.33546 4.39535 4.43699 4.47668 4.57782 4.63292 4.70273 4.82960 4.88254 4.98309 5.04070 5.19648 5.29176 5.42773 5.48834 5.67995 5.83572 6.03917 6.09514 6.24914 6.59938 6.87391 7.01134 8.59267 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016445 B = 0.002896 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.274711 B = 9666.967061 C = 9851.513528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.237 4.237 3 C 0.167 3.833 4 O -0.391 6.391 5 C 0.048 3.952 6 C 0.116 3.884 7 N -0.599 5.599 8 C 0.069 3.931 9 C 0.558 3.442 10 O -0.581 6.581 11 C -0.156 4.156 12 C -0.070 4.070 13 C -0.122 4.122 14 C -0.061 4.061 15 C -0.119 4.119 16 S -0.113 6.113 17 C -0.525 4.525 18 H 0.043 0.957 19 C 0.039 3.961 20 N -0.920 5.920 21 Si 0.924 3.076 22 H -0.262 1.262 23 H -0.257 1.257 24 H -0.225 1.225 25 C -0.046 4.046 26 H 0.252 0.748 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.033 0.967 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.179 0.821 37 H 0.178 0.822 38 H 0.140 0.860 39 H 0.278 0.722 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.697 -19.011 9.480 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.237 4.237 3 C 0.092 3.908 4 O -0.311 6.311 5 C -0.029 4.029 6 C -0.006 4.006 7 N -0.330 5.330 8 C -0.072 4.072 9 C 0.348 3.652 10 O -0.462 6.462 11 C -0.161 4.161 12 C -0.088 4.088 13 C -0.141 4.141 14 C -0.081 4.081 15 C -0.230 4.230 16 S 0.121 5.879 17 C -0.671 4.671 18 H 0.062 0.938 19 C -0.166 4.166 20 N -0.558 5.558 21 Si 0.744 3.256 22 H -0.187 1.187 23 H -0.181 1.181 24 H -0.149 1.149 25 C -0.068 4.068 26 H 0.269 0.731 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.196 0.804 37 H 0.195 0.805 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.597 -17.967 10.038 28.419 hybrid contribution 1.536 0.028 0.037 1.537 sum -18.061 -17.939 10.075 27.377 Atomic orbital electron populations 1.25835 0.96789 0.99108 0.96141 1.23042 0.94788 1.02252 1.03625 1.19178 0.84714 1.00986 0.85902 1.87870 1.21697 1.90841 1.30679 1.23009 0.80493 1.00981 0.98456 1.21735 1.01408 0.90929 0.86487 1.47710 1.16779 1.22920 1.45595 1.22436 0.81795 1.03593 0.99383 1.18542 0.83501 0.81464 0.81708 1.90753 1.25762 1.75777 1.53954 1.19930 1.03938 0.93168 0.99069 1.22208 0.93178 1.02067 0.91327 1.21588 1.00983 0.91386 1.00154 1.22073 0.93465 0.97877 0.94731 1.22044 1.03229 0.98549 0.99130 1.82544 1.20419 1.05796 1.79166 1.22381 1.01728 1.01382 1.41652 0.93841 1.25769 0.93713 1.02485 0.94611 1.70043 1.09120 1.33072 1.43582 0.85743 0.81884 0.78525 0.79404 1.18687 1.18072 1.14872 1.21571 0.95317 0.92521 0.97385 0.73129 0.88891 0.91260 0.89196 0.94827 0.86200 0.88933 0.89283 0.89317 0.90697 0.80409 0.80486 0.84178 0.91245 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 19.25 74.32 1.43 -0.84 16 2 C -0.24 -4.26 13.73 31.13 0.43 -3.84 16 3 C 0.17 2.75 6.41 70.18 0.45 3.20 16 4 O -0.39 -7.34 9.10 -148.98 -1.35 -8.69 16 5 C 0.05 0.84 6.28 71.98 0.45 1.30 16 6 C 0.12 2.07 5.78 86.38 0.50 2.57 16 7 N -0.60 -13.45 2.84 -850.15 -2.41 -15.86 16 8 C 0.07 1.04 8.60 127.77 1.10 2.14 16 9 C 0.56 18.33 7.42 86.79 0.64 18.97 16 10 O -0.58 -24.14 16.36 -3.89 -0.06 -24.21 16 11 C -0.16 -5.27 5.31 -20.11 -0.11 -5.38 16 12 C -0.07 -1.70 7.60 22.57 0.17 -1.53 16 13 C -0.12 -2.98 10.02 22.21 0.22 -2.76 16 14 C -0.06 -2.08 9.79 22.48 0.22 -1.86 16 15 C -0.12 -5.15 5.45 22.65 0.12 -5.03 16 16 S -0.11 -5.73 19.38 -56.49 -1.09 -6.82 16 17 C -0.52 -32.19 10.01 67.94 0.68 -31.51 16 18 H 0.04 2.97 8.02 -2.91 -0.02 2.95 16 19 C 0.04 2.36 5.50 84.84 0.47 2.83 16 20 N -0.92 -58.20 13.97 21.64 0.30 -57.89 16 21 Si 0.92 44.64 27.74 68.60 1.90 46.54 16 22 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.23 -10.30 6.74 99.48 0.67 -9.63 16 25 C -0.05 -1.97 9.35 22.70 0.21 -1.75 16 26 H 0.25 1.39 7.80 -4.42 -0.03 1.36 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.12 1.36 8.07 -2.38 -0.02 1.34 16 32 H 0.09 1.85 7.50 -2.39 -0.02 1.83 16 33 H 0.09 0.81 6.82 -2.38 -0.02 0.79 16 34 H 0.09 1.24 7.08 -2.39 -0.02 1.22 16 35 H 0.07 1.26 5.76 -2.39 -0.01 1.25 16 36 H 0.18 2.70 4.93 -2.91 -0.01 2.68 16 37 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 40 H 0.10 4.90 7.93 -2.91 -0.02 4.88 16 Total: -1.00 -83.23 361.73 5.28 -77.94 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.01 Total: 12.48 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 6.99 Total: -23.48 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.11 Total: -73.76 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.42 Total: -32.90 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.09 Total: -6.82 kcal Total: -83.23 5.28 -77.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001306014515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.787 kcal (2) G-P(sol) polarization free energy of solvation -83.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds