Wall clock time and date at job start Tue Mar 31 2020 13:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50704 * 119.96871 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47116 * 180.02562 * 19 18 17 21 21 C 1.35342 * 123.77337 * 94.72779 * 20 19 18 22 22 S 1.72118 * 104.15570 * 179.89926 * 21 20 19 23 23 N 1.56507 * 95.88358 * 0.32494 * 22 21 20 24 24 N 1.27571 * 109.22506 * 359.80394 * 23 22 21 25 25 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 33 33 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00895 * 110.99940 * 303.95620 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.08001 * 127.91908 * 359.97438 * 21 20 19 40 40 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7145 -9.7770 -0.0025 18 7 1.4933 -10.2131 -1.3877 19 6 0.8280 -11.5222 -1.4275 20 6 0.6189 -11.9360 -2.8614 21 6 1.4740 -12.7292 -3.5480 22 16 0.7547 -12.8753 -5.1048 23 7 -0.4864 -11.9742 -4.7933 24 7 -0.4140 -11.5613 -3.5884 25 6 1.6421 -7.2759 -0.0011 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4849 -7.0732 -0.0020 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5114 35 1 0.7564 -9.6981 0.5111 36 1 0.9668 -9.5244 -1.9038 37 1 1.4505 -12.2616 -0.9234 38 1 -0.1363 -11.4551 -0.9239 39 1 2.3957 -13.1704 -3.1985 40 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329732383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:29 Heat of formation + Delta-G solvation = 50.428243 kcal Electronic energy + Delta-G solvation = -22290.151204 eV Core-core repulsion = 18811.486171 eV Total energy + Delta-G solvation = -3478.665033 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27719 -39.83078 -37.71321 -36.16231 -33.40172 -32.99153 -31.04065 -30.64617 -29.16866 -27.61246 -26.65621 -25.06676 -24.10272 -22.29391 -21.72855 -21.51215 -20.19192 -18.81360 -17.70253 -16.57430 -16.26075 -16.18466 -15.87302 -15.62694 -15.34176 -15.21165 -14.83961 -14.70893 -14.48035 -13.89474 -13.22458 -13.04350 -12.75028 -12.61314 -12.43831 -12.33387 -12.28187 -11.90345 -11.40183 -11.36509 -11.27303 -10.88345 -10.72455 -10.50544 -10.46855 -10.31281 -10.13774 -9.86211 -9.66294 -9.30467 -8.93057 -8.66320 -8.45196 -7.84916 -6.10551 -4.15293 -0.12679 0.73231 1.32153 1.38868 1.67330 1.82525 3.27267 3.33117 3.35910 3.57330 3.78295 3.85918 4.23805 4.36071 4.40763 4.54947 4.71579 4.89646 4.93927 5.11043 5.20194 5.25791 5.27595 5.29561 5.39283 5.47969 5.64745 5.79808 6.02860 6.05436 6.15878 6.50690 6.52100 6.55558 6.69042 6.72360 6.94768 6.98659 7.39273 7.50276 7.63635 7.80884 8.05688 8.23447 8.90252 9.48995 11.01005 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.001956 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.538327 B =14310.106873 C =15182.971180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.065 3.935 11 O -0.316 6.316 12 C 0.145 3.855 13 C -0.209 4.209 14 C -0.082 4.082 15 C -0.148 4.148 16 C -0.054 4.054 17 C 0.104 3.896 18 N -0.681 5.681 19 C 0.142 3.858 20 C 0.028 3.972 21 C -0.274 4.274 22 S 0.419 5.581 23 N -0.286 5.286 24 N -0.235 5.235 25 C -0.155 4.155 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.352 0.648 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.199 0.801 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 -29.941 -4.474 30.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.009 4.009 11 O -0.229 6.229 12 C 0.098 3.902 13 C -0.228 4.228 14 C -0.100 4.100 15 C -0.167 4.167 16 C -0.054 4.054 17 C -0.025 4.025 18 N -0.313 5.313 19 C 0.010 3.990 20 C -0.117 4.117 21 C -0.431 4.431 22 S 0.555 5.445 23 N -0.265 5.265 24 N -0.103 5.103 25 C -0.174 4.174 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.171 0.829 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.216 0.784 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.432 -29.913 -6.088 31.005 hybrid contribution 0.622 1.430 1.593 2.229 sum 6.055 -28.483 -4.495 29.464 Atomic orbital electron populations 1.69980 1.06101 1.26979 1.49662 1.25000 0.94919 0.99408 0.94920 0.86479 0.79720 0.82911 0.78226 1.20484 1.21042 1.19766 1.20965 0.93036 0.90205 1.52265 0.92368 1.19125 0.94183 0.89028 0.98877 1.23330 0.97077 0.80817 0.99639 1.86175 1.36565 1.13217 1.86960 1.19147 0.90119 0.87485 0.93434 1.21412 0.93216 0.99902 1.08272 1.20898 0.99435 0.91957 0.97745 1.20748 0.93631 0.97377 1.04964 1.19329 0.93593 0.93143 0.99347 1.20846 0.99098 0.93629 0.88889 1.60568 1.53015 1.03865 1.13894 1.20315 0.98754 0.92905 0.87070 1.22227 0.90865 0.98477 1.00111 1.28141 1.07522 1.06986 1.00437 1.81522 1.11490 1.38552 1.12972 1.78914 1.20298 1.15257 1.12023 1.71202 1.21482 1.19700 0.97885 1.20297 1.00083 0.89556 1.07507 0.92694 0.95407 0.95388 0.93122 0.93141 0.85257 0.86160 0.86341 0.89759 0.93701 0.82920 0.88541 0.92532 0.78416 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.42 4.68 37.16 0.17 1.59 16 11 O -0.32 -6.58 10.14 -19.43 -0.20 -6.77 16 12 C 0.15 2.53 6.69 -39.22 -0.26 2.27 16 13 C -0.21 -3.26 9.04 -39.43 -0.36 -3.62 16 14 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 15 C -0.15 -1.75 9.70 -39.56 -0.38 -2.14 16 16 C -0.05 -0.65 5.39 -104.64 -0.56 -1.21 16 17 C 0.10 0.93 5.81 -4.98 -0.03 0.90 16 18 N -0.68 -6.20 6.48 -116.34 -0.75 -6.96 16 19 C 0.14 1.03 6.17 -4.98 -0.03 1.00 16 20 C 0.03 0.24 6.40 -83.66 -0.54 -0.29 16 21 C -0.27 -1.67 11.35 29.70 0.34 -1.33 16 22 S 0.42 2.69 23.40 -107.50 -2.52 0.17 16 23 N -0.29 -3.09 12.54 60.35 0.76 -2.33 16 24 N -0.23 -2.67 11.68 32.45 0.38 -2.29 16 25 C -0.16 -2.31 9.64 -39.43 -0.38 -2.69 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 1.04 7.68 -51.93 -0.40 0.64 16 30 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 31 H 0.13 2.00 6.30 -52.48 -0.33 1.67 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 35 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.35 3.76 8.71 -39.29 -0.34 3.42 16 37 H 0.10 0.48 8.12 -51.92 -0.42 0.06 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.20 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 360.52 15.07 5.43 5.43 Total: -1.00 -32.61 360.52 -9.40 -42.01 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.23 Total: 0.22 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.99 Total: -19.94 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 1.12 Total: -37.48 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.20 Total: -6.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.52 Total: 0.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.61 -9.40 -42.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329732383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.441 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds