Wall clock time and date at job start Tue Mar 31 2020 13:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00172 * 179.97438 * 11 10 9 13 13 C 1.38746 * 120.05467 * 359.72752 * 12 11 10 14 14 C 1.38129 * 119.94586 * 179.74253 * 13 12 11 15 15 C 1.38288 * 120.05279 * 0.50650 * 14 13 12 16 16 C 1.38250 * 120.10917 * 359.76642 * 15 14 13 17 17 C 1.50704 * 119.96871 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47159 * 270.02290 * 17 16 15 19 19 C 1.46900 * 111.00021 * 180.02562 * 18 17 16 20 20 C 1.50695 * 109.47116 * 180.02562 * 19 18 17 21 21 C 1.35342 * 123.77337 * 94.72779 * 20 19 18 22 22 S 1.72118 * 104.15570 * 179.89926 * 21 20 19 23 23 N 1.56507 * 95.88358 * 0.32494 * 22 21 20 24 24 N 1.27571 * 109.22506 * 359.80394 * 23 22 21 25 25 C 1.38162 * 120.05723 * 359.97438 * 16 15 14 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.08010 * 120.02919 * 359.97292 * 13 12 11 32 32 H 1.07992 * 119.97408 * 180.25091 * 14 13 12 33 33 H 1.07997 * 119.94352 * 179.74725 * 15 14 13 34 34 H 1.09003 * 109.46632 * 30.02434 * 17 16 15 35 35 H 1.08996 * 109.46429 * 150.02007 * 17 16 15 36 36 H 1.00895 * 110.99940 * 303.95620 * 18 17 16 37 37 H 1.09008 * 109.46830 * 300.00052 * 19 18 17 38 38 H 1.08997 * 109.46985 * 59.99504 * 19 18 17 39 39 H 1.08001 * 127.91908 * 359.97438 * 21 20 19 40 40 H 1.07998 * 120.02891 * 180.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2707 -6.0394 -0.0007 13 6 3.6563 -5.9682 -0.0064 14 6 4.4064 -7.1281 -0.0017 15 6 3.7773 -8.3596 -0.0018 16 6 2.3968 -8.4332 -0.0018 17 6 1.7145 -9.7770 -0.0025 18 7 1.4933 -10.2131 -1.3877 19 6 0.8280 -11.5222 -1.4275 20 6 0.6189 -11.9360 -2.8614 21 6 1.4740 -12.7292 -3.5480 22 16 0.7547 -12.8753 -5.1048 23 7 -0.4864 -11.9742 -4.7933 24 7 -0.4140 -11.5613 -3.5884 25 6 1.6421 -7.2759 -0.0011 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 4.1481 -5.0066 -0.0109 32 1 5.4849 -7.0732 -0.0020 33 1 4.3655 -9.2654 -0.0022 34 1 2.3435 -10.5040 0.5114 35 1 0.7564 -9.6981 0.5111 36 1 0.9668 -9.5244 -1.9038 37 1 1.4505 -12.2616 -0.9234 38 1 -0.1363 -11.4551 -0.9239 39 1 2.3957 -13.1704 -3.1985 40 1 0.5637 -7.3340 -0.0007 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329732383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:28 Heat of formation + Delta-G solvation = 28.211220 kcal Electronic energy + Delta-G solvation = -22291.114606 eV Core-core repulsion = 18811.486171 eV Total energy + Delta-G solvation = -3479.628435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88783 -41.07171 -38.91008 -36.98620 -35.48355 -33.72067 -32.59493 -31.77055 -30.56815 -28.24294 -27.47756 -26.90054 -24.95827 -23.43398 -23.31678 -22.12811 -21.53359 -19.47417 -19.05819 -18.17795 -17.24160 -16.97324 -16.93342 -16.83573 -16.77815 -16.45922 -15.97395 -15.57796 -15.49072 -14.74372 -14.36254 -14.34770 -14.27395 -14.03403 -13.50724 -13.13052 -13.10845 -13.01526 -12.88421 -12.60366 -12.55204 -12.43410 -12.32843 -11.85127 -11.60589 -11.57666 -11.39599 -11.08580 -10.89004 -10.71855 -10.64109 -9.86735 -9.45007 -9.08479 -8.28444 -6.42521 -0.67875 0.24303 0.34192 0.55614 0.76557 1.18762 1.39554 1.42168 1.53351 2.26218 2.50442 2.77125 3.05791 3.07418 3.47992 3.77560 3.89099 3.92222 4.07615 4.17748 4.22205 4.24336 4.36781 4.45559 4.48980 4.58435 4.63476 4.70378 4.72589 4.80192 4.82345 5.12700 5.29639 5.43791 5.43815 5.54076 5.64149 5.67152 5.86242 5.95644 6.06152 6.16653 6.56976 6.72263 6.80314 7.27678 8.84758 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.018124 B = 0.001956 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.538327 B =14310.106873 C =15182.971180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.978 3.022 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.345 6.345 12 C 0.103 3.897 13 C -0.223 4.223 14 C -0.080 4.080 15 C -0.136 4.136 16 C -0.047 4.047 17 C 0.107 3.893 18 N -0.684 5.684 19 C 0.145 3.855 20 C 0.008 3.992 21 C -0.258 4.258 22 S 0.478 5.522 23 N -0.344 5.344 24 N -0.277 5.277 25 C -0.167 4.167 26 H 0.267 0.733 27 H -0.004 1.004 28 H -0.002 1.002 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.338 0.662 37 H 0.128 0.872 38 H 0.051 0.949 39 H 0.235 0.765 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 -32.241 -4.290 33.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.010 4.010 10 C 0.012 3.988 11 O -0.259 6.259 12 C 0.058 3.942 13 C -0.242 4.242 14 C -0.098 4.098 15 C -0.154 4.154 16 C -0.047 4.047 17 C -0.021 4.021 18 N -0.315 5.315 19 C 0.013 3.987 20 C -0.137 4.137 21 C -0.415 4.415 22 S 0.612 5.388 23 N -0.323 5.323 24 N -0.143 5.143 25 C -0.186 4.186 26 H 0.076 0.924 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.155 0.845 37 H 0.146 0.854 38 H 0.069 0.931 39 H 0.252 0.748 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.835 -32.244 -5.901 33.950 hybrid contribution -0.382 1.891 1.486 2.436 sum 8.453 -30.353 -4.415 31.816 Atomic orbital electron populations 1.70130 1.08096 1.28256 1.50578 1.26085 0.95863 1.03816 0.94133 0.85254 0.78573 0.77373 0.78679 1.19538 1.20612 1.18202 1.21391 0.93832 0.90961 1.52184 0.91057 1.18969 0.94570 0.91515 0.95898 1.22835 0.95341 0.80269 1.00398 1.86079 1.37599 1.13853 1.88391 1.19514 0.91190 0.86806 0.96701 1.21513 0.92511 1.01064 1.09109 1.21278 1.00889 0.91272 0.96362 1.21217 0.93561 0.98331 1.02289 1.19692 0.94060 0.93537 0.97430 1.20900 0.99492 0.92430 0.89238 1.60618 1.53054 1.04272 1.13508 1.20438 0.99063 0.92520 0.86692 1.22485 0.91055 0.99447 1.00738 1.28616 1.07834 1.05181 0.99850 1.81213 1.09232 1.36010 1.12304 1.78624 1.23445 1.17836 1.12393 1.71210 1.23420 1.21163 0.98536 1.20479 1.00284 0.89825 1.08060 0.92427 0.98547 0.98346 0.92162 0.92373 0.85751 0.83101 0.82675 0.86760 0.93628 0.84519 0.85384 0.93116 0.74821 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.98 44.03 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.09 3.89 4.68 71.98 0.34 4.23 16 11 O -0.34 -15.24 10.14 -92.43 -0.94 -16.18 16 12 C 0.10 3.71 6.69 22.50 0.15 3.86 16 13 C -0.22 -6.88 9.04 22.37 0.20 -6.67 16 14 C -0.08 -1.84 10.04 22.26 0.22 -1.62 16 15 C -0.14 -2.70 9.70 22.28 0.22 -2.48 16 16 C -0.05 -1.04 5.39 -19.88 -0.11 -1.14 16 17 C 0.11 1.63 5.81 85.56 0.50 2.13 16 18 N -0.68 -10.97 6.48 -521.98 -3.38 -14.35 16 19 C 0.14 1.76 6.17 85.56 0.53 2.29 16 20 C 0.01 0.13 6.40 41.90 0.27 0.40 16 21 C -0.26 -2.36 11.35 67.15 0.76 -1.60 16 22 S 0.48 5.33 23.40 -56.49 -1.32 4.00 16 23 N -0.34 -7.51 12.54 37.02 0.46 -7.05 16 24 N -0.28 -6.35 11.68 -51.25 -0.60 -6.95 16 25 C -0.17 -5.05 9.64 22.36 0.22 -4.83 16 26 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.06 2.56 7.68 -2.39 -0.02 2.54 16 30 H 0.06 2.49 7.65 -2.39 -0.02 2.47 16 31 H 0.12 3.85 6.30 -2.91 -0.02 3.83 16 32 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.11 1.10 8.09 -2.39 -0.02 1.08 16 35 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 36 H 0.34 7.08 8.71 -89.70 -0.78 6.30 16 37 H 0.13 0.72 8.12 -2.38 -0.02 0.70 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.24 0.22 8.06 -2.91 -0.02 0.20 16 40 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -75.54 360.52 0.96 -74.58 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.28 Total: 11.66 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 4.15 Total: -34.43 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -3.23 Total: -85.68 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.94 Total: -16.18 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.32 Total: 4.00 kcal Total: -75.54 0.96 -74.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329732383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.789 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds