Wall clock time and date at job start Tue Mar 31 2020 12:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 C 1.50705 * 109.47145 * 119.99606 * 2 1 3 5 5 H 1.08004 * 119.99534 * 119.99651 * 4 2 1 6 6 C 1.37867 * 120.00128 * 300.00312 * 4 2 1 7 7 N 1.31526 * 120.00173 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00118 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47141 * 60.00087 * 8 6 4 10 10 H 1.48506 * 109.47186 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47116 * 299.99679 * 8 6 4 12 12 S 1.81396 * 109.47236 * 239.99661 * 2 1 3 13 13 C 1.76202 * 103.00140 * 71.45674 * 12 2 1 14 14 C 1.38789 * 120.10264 * 6.09987 * 13 12 2 15 15 C 1.38197 * 119.98893 * 179.97438 * 14 13 12 16 16 C 1.38294 * 120.19800 * 0.02562 * 15 14 13 17 17 C 1.38249 * 120.21314 * 359.97438 * 16 15 14 18 18 C 1.38647 * 120.00812 * 0.02562 * 17 16 15 19 19 N 1.40137 * 120.09856 * 180.02562 * 18 17 16 20 20 C 1.34771 * 120.00390 * 20.01955 * 19 18 17 21 21 O 1.21301 * 119.99448 * 6.02100 * 20 19 18 22 22 C 1.50696 * 120.00559 * 186.02196 * 20 19 18 23 23 C 1.53842 * 113.65697 * 279.00257 * 22 20 19 24 24 C 1.51774 * 86.68760 * 220.75925 * 23 22 20 25 25 O 1.20762 * 135.74737 * 205.15763 * 24 23 22 26 26 C 1.51580 * 88.46836 * 25.07974 * 24 23 22 27 27 H 1.08998 * 109.47164 * 179.88782 * 1 2 3 28 28 H 1.08995 * 109.46757 * 299.89175 * 1 2 3 29 29 H 1.08999 * 109.47005 * 59.88631 * 1 2 3 30 30 H 0.96992 * 119.99859 * 180.02562 * 7 6 4 31 31 H 1.07998 * 120.00229 * 359.95662 * 14 13 12 32 32 H 1.08003 * 119.89992 * 179.97438 * 15 14 13 33 33 H 1.08002 * 119.89017 * 179.70049 * 16 15 14 34 34 H 1.08004 * 119.99380 * 179.97438 * 17 16 15 35 35 H 0.97008 * 120.00183 * 200.01840 * 19 18 17 36 36 H 1.08997 * 112.88361 * 50.32814 * 22 20 19 37 37 H 1.09001 * 113.66898 * 335.19175 * 23 22 20 38 38 H 1.08995 * 113.67061 * 106.25894 * 23 22 20 39 39 H 1.09002 * 113.66021 * 220.46244 * 26 24 23 40 40 H 1.08997 * 113.66662 * 89.38994 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.8064 -1.1207 4.0083 10 1 1.8269 -0.4197 5.2205 11 1 1.8258 -2.5200 4.0079 12 16 2.1347 -0.8552 -1.4810 13 6 1.7521 0.2765 -2.7762 14 6 1.2467 1.5336 -2.4755 15 6 0.9479 2.4196 -3.4932 16 6 1.1504 2.0575 -4.8124 17 6 1.6535 0.8074 -5.1214 18 6 1.9562 -0.0882 -4.1073 19 7 2.4668 -1.3557 -4.4183 20 6 3.0388 -1.5759 -5.6186 21 8 3.2107 -0.6531 -6.3869 22 6 3.4650 -2.9684 -6.0062 23 6 4.8225 -3.3856 -5.4149 24 6 5.1148 -4.0208 -6.7620 25 8 5.8199 -4.9160 -7.1614 26 6 4.1369 -3.0462 -7.3879 27 1 -0.3633 -1.0276 -0.0020 28 1 -0.3633 0.5121 0.8909 29 1 -0.3633 0.5156 -0.8890 30 1 0.7095 1.1619 3.4843 31 1 1.0866 1.8193 -1.4464 32 1 0.5542 3.3973 -3.2575 33 1 0.9107 2.7520 -5.6040 34 1 1.8099 0.5282 -6.1530 35 1 2.4085 -2.0747 -3.7697 36 1 2.6783 -3.7085 -5.8600 37 1 5.4736 -2.5442 -5.1774 38 1 4.7423 -4.1042 -4.5993 39 1 3.5061 -3.4926 -8.1566 40 1 4.5952 -2.1095 -7.7050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362095095.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:09 Heat of formation + Delta-G solvation = -35.193408 kcal Electronic energy + Delta-G solvation = -23506.381106 eV Core-core repulsion = 19991.710489 eV Total energy + Delta-G solvation = -3514.670617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03541 -40.66599 -39.32294 -37.02805 -36.25633 -35.75982 -32.78276 -31.56674 -30.78772 -27.37956 -27.13968 -26.66566 -24.15234 -23.69171 -22.91340 -21.35272 -20.04207 -19.43433 -18.53597 -18.14638 -17.83297 -17.00528 -16.95331 -16.58160 -16.39458 -16.00638 -15.91729 -15.49773 -15.10210 -15.00660 -14.65085 -14.40544 -14.14990 -13.78389 -13.66435 -13.40115 -13.24224 -13.00069 -12.85915 -12.77241 -12.46250 -12.43922 -12.27257 -12.20099 -11.82970 -11.54172 -11.35983 -10.82948 -10.78057 -10.57437 -10.48706 -10.44216 -9.25234 -8.23903 -8.12009 -6.40437 0.22285 0.38191 0.76773 0.85696 1.43869 1.44291 1.48040 1.52580 1.82642 2.02125 2.38817 2.75368 2.82196 3.06325 3.23024 3.61350 3.69794 3.94296 4.02805 4.15246 4.20768 4.42206 4.52352 4.54525 4.55488 4.61946 4.70259 4.82750 4.85017 4.87505 4.92652 5.02053 5.18796 5.31979 5.35693 5.47474 5.58423 5.60847 5.76165 6.02506 6.05676 6.34050 6.40269 6.62256 6.97374 7.27488 8.81498 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.003513 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.363720 B = 7967.430650 C = 9821.105501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.097 3.903 3 H 0.025 0.975 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.028 3.972 7 N -0.910 5.910 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.268 1.268 12 S -0.165 6.165 13 C -0.118 4.118 14 C -0.130 4.130 15 C -0.122 4.122 16 C -0.108 4.108 17 C -0.133 4.133 18 C 0.148 3.852 19 N -0.654 5.654 20 C 0.530 3.470 21 O -0.543 6.543 22 C -0.119 4.119 23 C -0.175 4.175 24 C 0.369 3.631 25 O -0.461 6.461 26 C -0.160 4.160 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.034 0.966 30 H 0.268 0.732 31 H 0.115 0.885 32 H 0.144 0.856 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.420 0.580 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 -3.946 -16.426 16.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.031 4.031 3 H 0.043 0.957 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.174 4.174 7 N -0.547 5.547 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.205 1.205 11 H -0.193 1.193 12 S 0.081 5.919 13 C -0.234 4.234 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.129 4.129 17 C -0.154 4.154 18 C 0.047 3.953 19 N -0.298 5.298 20 C 0.319 3.681 21 O -0.421 6.421 22 C -0.140 4.140 23 C -0.213 4.213 24 C 0.245 3.755 25 O -0.335 6.335 26 C -0.197 4.197 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.162 0.838 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.259 0.741 36 H 0.174 0.826 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.095 -4.881 -17.022 17.831 hybrid contribution -0.540 0.872 1.746 2.025 sum 1.555 -4.010 -15.276 15.869 Atomic orbital electron populations 1.21918 0.95812 1.00193 1.00750 1.20829 0.95955 0.96118 0.90150 0.95722 1.20882 1.32932 1.13423 0.89981 0.92023 1.25652 0.94679 0.95535 1.01536 1.69962 1.36444 1.23443 1.24895 0.85489 0.78811 0.78774 0.77932 1.19613 1.20549 1.19306 1.84580 1.76983 1.29383 1.00943 1.21713 1.07410 0.98909 0.95320 1.21262 1.00800 0.92978 1.00351 1.21306 1.00511 0.99932 0.92501 1.21377 0.98492 0.96366 0.96663 1.21642 1.00001 0.94069 0.99725 1.17421 0.99611 0.87328 0.90965 1.43634 1.57050 1.11160 1.17959 1.20811 0.75661 0.91526 0.80102 1.90614 1.54425 1.45316 1.51700 1.22468 0.99267 0.93598 0.98700 1.24110 0.94838 1.02900 0.99431 1.25797 0.76058 0.80127 0.93549 1.90440 1.35504 1.28708 1.78820 1.23944 0.97363 1.01122 0.97299 0.94375 0.91001 0.94675 0.92246 0.86682 0.83794 0.82718 0.82532 0.74124 0.82650 0.85711 0.86046 0.86348 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.58 71.98 0.62 -5.23 16 2 C 0.10 4.68 1.97 29.85 0.06 4.74 16 3 H 0.02 1.31 6.74 -2.39 -0.02 1.29 16 4 C -0.53 -27.89 8.58 25.60 0.22 -27.67 16 5 H 0.06 3.21 7.71 -2.91 -0.02 3.18 16 6 C 0.03 1.45 5.30 84.65 0.45 1.90 16 7 N -0.91 -49.06 11.32 21.45 0.24 -48.81 16 8 Si 0.97 41.15 29.54 68.60 2.03 43.17 16 9 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 S -0.17 -6.54 19.86 -56.49 -1.12 -7.66 16 13 C -0.12 -4.25 6.05 22.71 0.14 -4.11 16 14 C -0.13 -4.61 8.12 22.39 0.18 -4.43 16 15 C -0.12 -3.49 10.04 22.27 0.22 -3.27 16 16 C -0.11 -2.76 10.04 22.29 0.22 -2.54 16 17 C -0.13 -3.78 8.77 22.37 0.20 -3.58 16 18 C 0.15 4.58 6.51 38.22 0.25 4.82 16 19 N -0.65 -16.16 5.23 -303.02 -1.59 -17.74 16 20 C 0.53 11.16 7.20 87.66 0.63 11.79 16 21 O -0.54 -14.26 12.85 -3.09 -0.04 -14.30 16 22 C -0.12 -1.52 4.17 -11.03 -0.05 -1.56 16 23 C -0.17 -2.20 7.62 30.47 0.23 -1.97 16 24 C 0.37 5.84 9.14 29.67 0.27 6.11 16 25 O -0.46 -10.95 17.99 -1.46 -0.03 -10.97 16 26 C -0.16 -1.96 7.38 30.41 0.22 -1.74 16 27 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 29 H 0.03 1.45 6.25 -2.39 -0.01 1.44 16 30 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 31 H 0.12 4.58 4.96 -2.91 -0.01 4.57 16 32 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.16 4.29 5.46 -2.91 -0.02 4.27 16 35 H 0.42 9.50 7.52 -92.70 -0.70 8.80 16 36 H 0.16 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.65 8.09 -2.39 -0.02 1.63 16 38 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.13 1.79 7.44 -2.39 -0.02 1.77 16 Total: -1.00 -64.01 344.82 3.76 -60.25 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.39 Total: 22.80 kcal Atomic # 6 Polarization: -30.60 SS G_CDS: 3.87 Total: -26.73 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.34 Total: -66.56 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.07 Total: -25.27 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.12 Total: -7.66 kcal Total: -64.01 3.76 -60.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362095095.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.055 kcal (2) G-P(sol) polarization free energy of solvation -64.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds