Wall clock time and date at job start Tue Mar 31 2020 12:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00144 * 2 1 4 4 C 1.50700 * 109.47316 * 270.00052 * 3 2 1 5 5 N 1.31700 * 126.18415 * 274.69259 * 4 3 2 6 6 C 1.34337 * 105.81916 * 179.85592 * 5 4 3 7 7 O 1.21899 * 126.56654 * 180.18261 * 6 5 4 8 8 O 1.34141 * 106.86421 * 0.40453 * 6 5 4 9 9 N 1.21334 * 109.55278 * 359.73863 * 8 6 5 10 10 H 0.97001 * 124.94172 * 179.97438 * 9 8 6 11 11 C 1.34777 * 119.99644 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99763 * 184.68691 * 11 2 1 13 13 C 1.47535 * 119.99958 * 4.68040 * 11 2 1 14 14 C 1.39659 * 120.20041 * 311.86107 * 13 11 2 15 15 C 1.37830 * 119.92274 * 180.02562 * 14 13 11 16 16 C 1.38578 * 120.31947 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40051 * 0.02562 * 16 15 14 18 18 C 1.38827 * 120.07467 * 0.02562 * 17 16 15 19 19 O 1.35522 * 120.16110 * 179.97438 * 18 17 16 20 20 C 1.34810 * 117.00016 * 354.03829 * 19 18 17 21 21 H 1.07998 * 119.99956 * 5.03948 * 20 19 18 22 22 C 1.38698 * 120.00076 * 185.03597 * 20 19 18 23 23 N 1.31517 * 120.00261 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00116 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47012 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47105 * 119.99909 * 24 22 20 27 27 H 1.48491 * 109.47758 * 240.00346 * 24 22 20 28 28 H 1.08996 * 109.47035 * 272.05753 * 1 2 3 29 29 H 1.09005 * 109.46684 * 32.05964 * 1 2 3 30 30 H 1.08994 * 109.47177 * 152.05571 * 1 2 3 31 31 H 1.08997 * 109.46723 * 30.00672 * 3 2 1 32 32 H 1.08998 * 109.46688 * 149.99828 * 3 2 1 33 33 H 1.08002 * 120.03916 * 359.97438 * 14 13 11 34 34 H 1.07999 * 119.83957 * 180.02562 * 15 14 13 35 35 H 1.07997 * 119.79511 * 179.74866 * 16 15 14 36 36 H 1.08006 * 119.96134 * 180.02562 * 17 16 15 37 37 H 0.96993 * 120.00396 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 7 3.4548 1.3275 -2.1828 6 6 3.2775 1.9528 -3.3585 7 8 3.9939 1.8686 -4.3412 8 8 2.1638 2.6914 -3.2424 9 7 1.6937 2.5458 -2.1334 10 1 0.8875 2.9779 -1.8105 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1691 0.0855 13 6 1.4048 -2.4427 -0.1053 14 6 0.2953 -2.6837 0.7080 15 6 -0.3860 -3.8774 0.6057 16 6 0.0241 -4.8414 -0.3016 17 6 1.1187 -4.6172 -1.1119 18 6 1.8177 -3.4211 -1.0218 19 8 2.8930 -3.1993 -1.8162 20 6 3.3083 -4.2261 -2.5848 21 1 2.7414 -5.1450 -2.6107 22 6 4.4636 -4.1024 -3.3423 23 7 5.1542 -2.9836 -3.3104 24 14 5.0394 -5.5254 -4.4067 25 1 4.0942 -6.6622 -4.2669 26 1 5.0871 -5.0937 -5.8267 27 1 6.3942 -5.9514 -3.9731 28 1 -0.3633 0.0369 1.0270 29 1 -0.3633 0.8710 -0.5455 30 1 -0.3633 -0.9078 -0.4815 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5139 33 1 -0.0280 -1.9358 1.4169 34 1 -1.2440 -4.0622 1.2350 35 1 -0.5135 -5.7754 -0.3719 36 1 1.4319 -5.3732 -1.8168 37 1 5.9623 -2.8972 -3.8398 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363449597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:43 Heat of formation + Delta-G solvation = 34.264685 kcal Electronic energy + Delta-G solvation = -27075.304056 eV Core-core repulsion = 23017.352153 eV Total energy + Delta-G solvation = -4057.951903 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.42175 -39.97762 -38.47054 -37.76124 -36.44753 -36.16814 -34.80618 -32.34269 -32.32300 -30.91689 -29.02060 -28.54307 -26.35577 -25.38204 -23.94747 -22.98484 -22.05591 -21.49229 -20.10067 -19.28329 -18.33729 -18.06647 -17.29312 -16.63082 -16.41216 -15.99215 -15.69240 -15.30596 -14.73712 -14.44917 -14.20778 -13.80948 -13.70103 -13.44261 -13.38646 -13.05441 -12.69836 -12.57860 -12.50213 -12.23752 -11.69592 -11.61345 -11.34319 -11.27738 -11.13860 -10.89831 -10.76435 -10.40795 -10.28980 -9.63255 -9.14399 -8.94378 -8.84942 -8.75536 -8.28779 -7.35342 -6.39297 -4.01858 0.99641 1.73628 1.84442 2.26199 2.88988 3.15418 3.16757 3.21153 3.22963 3.34619 3.51579 3.96375 3.99955 4.46394 4.56750 4.95900 4.98359 5.04425 5.14681 5.18741 5.34729 5.47789 5.53741 5.67953 5.70261 5.88605 5.95471 6.11075 6.39209 6.47939 6.52625 6.65546 6.90161 7.00151 7.20448 7.27711 7.55514 7.64792 7.78006 7.96713 8.12206 8.71332 8.98935 9.64456 10.73543 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.009443 B = 0.006274 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.419267 B = 4461.731234 C = 6839.009281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.624 5.624 3 C 0.188 3.812 4 C 0.326 3.674 5 N -0.502 5.502 6 C 0.555 3.445 7 O -0.463 6.463 8 O -0.093 6.093 9 N -0.508 5.508 10 H 0.464 0.536 11 C 0.574 3.426 12 O -0.484 6.484 13 C -0.225 4.225 14 C -0.041 4.041 15 C -0.231 4.231 16 C -0.052 4.052 17 C -0.235 4.235 18 C 0.186 3.814 19 O -0.138 6.138 20 C -0.405 4.405 21 H 0.095 0.905 22 C 0.045 3.955 23 N -0.824 5.824 24 Si 0.940 3.060 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.661 9.031 9.191 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.362 5.362 3 C 0.062 3.938 4 C 0.055 3.945 5 N -0.261 5.261 6 C 0.304 3.696 7 O -0.342 6.342 8 O -0.115 6.115 9 N -0.178 5.178 10 H 0.316 0.684 11 C 0.364 3.636 12 O -0.354 6.354 13 C -0.230 4.230 14 C -0.060 4.060 15 C -0.250 4.250 16 C -0.071 4.071 17 C -0.255 4.255 18 C 0.126 3.874 19 O -0.037 6.037 20 C -0.481 4.481 21 H 0.112 0.888 22 C -0.164 4.164 23 N -0.454 5.454 24 Si 0.764 3.236 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.557 8.977 8.240 17.497 hybrid contribution -0.771 -0.119 -0.895 1.187 sum -13.329 8.858 7.345 17.608 Atomic orbital electron populations 1.22025 0.79255 1.03717 1.01707 1.47827 1.06772 1.04319 1.77264 1.19970 1.02093 0.87144 0.84608 1.26394 0.85696 0.84455 0.97990 1.73689 1.22872 1.26911 1.02592 1.22106 0.78945 0.78813 0.89689 1.91175 1.44753 1.64464 1.33852 1.85208 1.43714 1.64416 1.18144 1.42423 1.26947 1.44439 1.03967 0.68389 1.18382 0.87109 0.82872 0.75239 1.90880 1.13288 1.86292 1.44986 1.18560 1.02834 0.95621 1.05988 1.20792 0.92264 0.96798 0.96156 1.20447 1.03864 0.95852 1.04822 1.20895 0.94729 0.97649 0.93786 1.21136 0.99626 0.99175 1.05516 1.19175 0.87949 0.91565 0.88664 1.84022 1.36533 1.37959 1.45217 1.21438 1.09424 0.93868 1.23324 0.88756 1.25406 0.95167 0.98204 0.97633 1.70105 1.14809 1.24174 1.36330 0.85675 0.79106 0.79578 0.79208 1.19012 1.20021 1.19906 0.92070 0.92414 0.89293 0.87220 0.84800 0.86531 0.87234 0.87224 0.85079 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 9.06 59.85 0.54 1.22 16 2 N -0.62 -8.47 2.86 -184.20 -0.53 -8.99 16 3 C 0.19 2.01 6.08 -5.19 -0.03 1.98 16 4 C 0.33 4.50 7.81 -155.64 -1.22 3.29 16 5 N -0.50 -10.47 11.55 -14.53 -0.17 -10.64 16 6 C 0.56 11.58 9.62 53.44 0.51 12.09 16 7 O -0.46 -11.56 18.07 -19.16 -0.35 -11.90 16 8 O -0.09 -1.38 11.35 -7.38 -0.08 -1.47 16 9 N -0.51 -5.15 6.79 32.12 0.22 -4.93 16 10 H 0.46 1.87 8.96 -40.82 -0.37 1.50 16 11 C 0.57 11.56 6.97 -12.47 -0.09 11.47 16 12 O -0.48 -12.19 16.05 -4.78 -0.08 -12.27 16 13 C -0.23 -4.57 4.95 -104.81 -0.52 -5.09 16 14 C -0.04 -0.64 7.59 -39.20 -0.30 -0.94 16 15 C -0.23 -3.48 10.03 -39.61 -0.40 -3.88 16 16 C -0.05 -0.88 10.03 -39.53 -0.40 -1.27 16 17 C -0.24 -4.93 9.16 -39.44 -0.36 -5.29 16 18 C 0.19 4.48 6.63 -38.60 -0.26 4.22 16 19 O -0.14 -4.07 8.78 -9.26 -0.08 -4.15 16 20 C -0.41 -11.61 9.49 30.90 0.29 -11.31 16 21 H 0.10 2.45 5.21 -52.49 -0.27 2.18 16 22 C 0.04 1.29 5.49 -17.52 -0.10 1.19 16 23 N -0.82 -25.89 13.67 55.48 0.76 -25.13 16 24 Si 0.94 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.06 0.38 7.48 -51.93 -0.39 -0.01 16 29 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.09 0.99 5.69 -51.93 -0.30 0.70 16 31 H 0.11 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.13 1.66 7.36 -51.93 -0.38 1.28 16 33 H 0.12 1.37 6.43 -52.49 -0.34 1.03 16 34 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 2.76 5.64 -52.48 -0.30 2.47 16 37 H 0.27 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -42.72 330.26 -5.82 -48.54 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.16 Total: 2.00 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -2.31 Total: 7.67 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.28 Total: -49.69 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.59 Total: -29.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -42.72 -5.82 -48.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363449597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.802 kcal (2) G-P(sol) polarization free energy of solvation -42.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds